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The map label for this gene is yhfM [C]

Identifier: 150398487

GI number: 150398487

Start: 3489413

End: 3490810

Strand: Reverse

Name: yhfM [C]

Synonym: Smed_3297

Alternate gene names: 150398487

Gene position: 3490810-3489413 (Counterclockwise)

Preceding gene: 150398488

Following gene: 150398486

Centisome position: 92.3

GC content: 62.23

Gene sequence:

>1398_bases
ATGGACGATATTACATCCGCCGCGGCTGAGCCGGACCGGTTGCGGCTGTTGAGGGTTCTCGGACCCTCGCATGTCTGGGC
ACTCGGCGTCGGCATCGTGCTCGTCGGCGAATATATGGGCTGGAATTTCTCCGTGGGCAAAGGCGGCATGATCGCCGGCC
TGATGGCCTGCTGGGTGGCAGGCCTGCTCTACACCTGCGTCGCCATGATCGACTCCGAGGTTACCTCGACGGTCGCCGCA
GCGGGTGGTCAGTACGCTCAGGCAAAACACATCGTCGGCCCGCTGATGGCGTTCAATGTCGGTCTTTTCCTCGTCATGGC
CTATACCATGCTCGAGGCCGCCAACGCCATCACCGTCGGCTTCCTGCTCGACACTGTGGCGGGCATGCAGGGCCAGGCAG
GCCTCAACCAGCAGCCCTTCATCGTTCTCGCCGTCATGTTCCTGGCATGGCTCAACTATCGCGGCGTGCTCGCGACCCTG
ACCTTCAACCTGGTCATCACCGCCGTCGCCTTCCTTGCGATCGTGGCGCTGTTCGTGTCGGTGCAGTTCGGCGCCTCTGC
AGTGCCGCTCGATTTTTCGGCGATCACCACGGATCCGCTCCCCTATGGCTGGGTCGGGATCGTTGCATCGCTGCACTTCG
GCCTCTGGTACTATCTCGGCATCGAGGGTACCTGCCAGGCAGCCGAGGAGGTGCGCTCACCTGCCCGTTCGCTTCCCTAT
GGCACGATGGCCGGCATCATGACACTGCTGGTTGCGGCCACAATGACCTGGTATATCTGCTCCGGCCTGATGCCGTGGGA
ATATCTTGGTCAGGCCGGAACGCCCTTGTTCGACGCCGCCCGCGTCACCGGCAGCACCGGGTTGATGATCCTGCTGTTCG
TCGGCACGGCCTTCGCCACGCTCGCCTCGGCAAACGGCTGCATCAACGACGCTTCACGGGCCTGGTTCTCGATGAGCCGC
GACCGCTATCTGCCGAGCTGGTTCGGTGCCGTCCATCCGGTCTACCGCACGCCCTATCGCGCAATCGTCTTCCTGGTCCC
CATCGCGCTCATTTTCGCGCTCGGAGCCCCGCTCGATCAGGTCGTGACCTTCTCCATTCTTTCGGGCCTGCTCGGCTACA
CCTTCATGACCTTCAACATGGTGATGTTCCGAAACAAGTGGCCGCTCGGCAAGATCAAACGCGGCTACGTGCACCCGTTT
CACCCTTTGCCGACGATCGTGCTGCTCATTCTGTGCTCGACCGCCTATTTCGCCGTGTTCCTCGGCTACGGCACGCAGCT
CAGCGCGATGATGTGCTTCTATATCATAGCGTCGCTGTGGTTCCACTTCCGGCGCTACAAGTTCGTACGCCGCGGCGACC
AGTTCACGATGCCCTGGCCGAAGCCGCAAGGCTATTGA

Upstream 100 bases:

>100_bases
GCATCGACAGCACTTACGACAACGAACTGCTGATCTCCTCTCGCGAAGGCGAGATCGAGGCGACCGCAGAGCGCCACGAG
ATCTGAGGGGAGGACAGCAG

Downstream 100 bases:

>100_bases
CCGGCTTAAGTCGGCGGCACCTGGCGAGCCGCCGACCTTCGGAGGGCGTGCACCCGATTCGGATCGTGCGCTCCCCTTCT
TGAAACCGACCGGAGCGCTT

Product: amino acid permease-associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 465; Mature: 465

Protein sequence:

>465_residues
MDDITSAAAEPDRLRLLRVLGPSHVWALGVGIVLVGEYMGWNFSVGKGGMIAGLMACWVAGLLYTCVAMIDSEVTSTVAA
AGGQYAQAKHIVGPLMAFNVGLFLVMAYTMLEAANAITVGFLLDTVAGMQGQAGLNQQPFIVLAVMFLAWLNYRGVLATL
TFNLVITAVAFLAIVALFVSVQFGASAVPLDFSAITTDPLPYGWVGIVASLHFGLWYYLGIEGTCQAAEEVRSPARSLPY
GTMAGIMTLLVAATMTWYICSGLMPWEYLGQAGTPLFDAARVTGSTGLMILLFVGTAFATLASANGCINDASRAWFSMSR
DRYLPSWFGAVHPVYRTPYRAIVFLVPIALIFALGAPLDQVVTFSILSGLLGYTFMTFNMVMFRNKWPLGKIKRGYVHPF
HPLPTIVLLILCSTAYFAVFLGYGTQLSAMMCFYIIASLWFHFRRYKFVRRGDQFTMPWPKPQGY

Sequences:

>Translated_465_residues
MDDITSAAAEPDRLRLLRVLGPSHVWALGVGIVLVGEYMGWNFSVGKGGMIAGLMACWVAGLLYTCVAMIDSEVTSTVAA
AGGQYAQAKHIVGPLMAFNVGLFLVMAYTMLEAANAITVGFLLDTVAGMQGQAGLNQQPFIVLAVMFLAWLNYRGVLATL
TFNLVITAVAFLAIVALFVSVQFGASAVPLDFSAITTDPLPYGWVGIVASLHFGLWYYLGIEGTCQAAEEVRSPARSLPY
GTMAGIMTLLVAATMTWYICSGLMPWEYLGQAGTPLFDAARVTGSTGLMILLFVGTAFATLASANGCINDASRAWFSMSR
DRYLPSWFGAVHPVYRTPYRAIVFLVPIALIFALGAPLDQVVTFSILSGLLGYTFMTFNMVMFRNKWPLGKIKRGYVHPF
HPLPTIVLLILCSTAYFAVFLGYGTQLSAMMCFYIIASLWFHFRRYKFVRRGDQFTMPWPKPQGY
>Mature_465_residues
MDDITSAAAEPDRLRLLRVLGPSHVWALGVGIVLVGEYMGWNFSVGKGGMIAGLMACWVAGLLYTCVAMIDSEVTSTVAA
AGGQYAQAKHIVGPLMAFNVGLFLVMAYTMLEAANAITVGFLLDTVAGMQGQAGLNQQPFIVLAVMFLAWLNYRGVLATL
TFNLVITAVAFLAIVALFVSVQFGASAVPLDFSAITTDPLPYGWVGIVASLHFGLWYYLGIEGTCQAAEEVRSPARSLPY
GTMAGIMTLLVAATMTWYICSGLMPWEYLGQAGTPLFDAARVTGSTGLMILLFVGTAFATLASANGCINDASRAWFSMSR
DRYLPSWFGAVHPVYRTPYRAIVFLVPIALIFALGAPLDQVVTFSILSGLLGYTFMTFNMVMFRNKWPLGKIKRGYVHPF
HPLPTIVLLILCSTAYFAVFLGYGTQLSAMMCFYIIASLWFHFRRYKFVRRGDQFTMPWPKPQGY

Specific function: Probable amino-acid or metabolite transport protein [H]

COG id: COG0531

COG function: function code E; Amino acid transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily [H]

Homologues:

Organism=Escherichia coli, GI87082250, Length=416, Percent_Identity=25.9615384615385, Blast_Score=72, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004841
- InterPro:   IPR002293 [H]

Pfam domain/function: PF00324 AA_permease [H]

EC number: NA

Molecular weight: Translated: 50733; Mature: 50733

Theoretical pI: Translated: 8.59; Mature: 8.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDITSAAAEPDRLRLLRVLGPSHVWALGVGIVLVGEYMGWNFSVGKGGMIAGLMACWVA
CCCCHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHH
GLLYTCVAMIDSEVTSTVAAAGGQYAQAKHIVGPLMAFNVGLFLVMAYTMLEAANAITVG
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLLDTVAGMQGQAGLNQQPFIVLAVMFLAWLNYRGVLATLTFNLVITAVAFLAIVALFVS
HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VQFGASAVPLDFSAITTDPLPYGWVGIVASLHFGLWYYLGIEGTCQAAEEVRSPARSLPY
HHCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC
GTMAGIMTLLVAATMTWYICSGLMPWEYLGQAGTPLFDAARVTGSTGLMILLFVGTAFAT
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHH
LASANGCINDASRAWFSMSRDRYLPSWFGAVHPVYRTPYRAIVFLVPIALIFALGAPLDQ
HHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHCHHHHCHHHHHHHHHHHHHHHHHCCCHHH
VVTFSILSGLLGYTFMTFNMVMFRNKWPLGKIKRGYVHPFHPLPTIVLLILCSTAYFAVF
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
LGYGTQLSAMMCFYIIASLWFHFRRYKFVRRGDQFTMPWPKPQGY
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure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HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]