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The map label for this gene is soxD [H]

Identifier: 150398478

GI number: 150398478

Start: 3481013

End: 3481291

Strand: Reverse

Name: soxD [H]

Synonym: Smed_3288

Alternate gene names: 150398478

Gene position: 3481291-3481013 (Counterclockwise)

Preceding gene: 150398479

Following gene: 150398477

Centisome position: 92.05

GC content: 61.29

Gene sequence:

>279_bases
ATGGCAAGTCTCGTGCCCTGCCCGAATTGCGGGCGAAGACCCAAAGAAGAATTCACGATCAAGGGTGCCGCCCTCTCGCG
TCCCGGAGCCGACGCGGATTCCGAAAATTGGTTCGACTACGTTTACCTGCGCGACAATCCGCGTGGCGCCTATGAGGAAT
ACTGGCACCACACTTCCGGGTGCCGGCGCTGGCTCGTTGTCATGCGGGATACCCTGACACATGAGGTCGCCGCGTGTCGC
GATGCGACCGACGGCTCTCGATCGGAGCGACGCAAATGA

Upstream 100 bases:

>100_bases
TTCGTCTCGACCGTTTCGAGCGAGGCTACCTCCTTGATGAAAAAGGCCAAGGCGCTCAGCCGAACCTTCACTGATTTCGC
GGACCAAGGAAAATTTCGAA

Downstream 100 bases:

>100_bases
GCTCCTATCGCCTTCCGAACCTTGGTCTTGTCAGCCGAGACACACCCGTCTCCTTTACCTTCGACGGAAAGCCGATGCAG
GGCCTTCAGGGCGACACGCT

Product: sarcosine oxidase subunit delta family protein

Products: NA

Alternate protein names: Sarcosine oxidase subunit D [H]

Number of amino acids: Translated: 92; Mature: 91

Protein sequence:

>92_residues
MASLVPCPNCGRRPKEEFTIKGAALSRPGADADSENWFDYVYLRDNPRGAYEEYWHHTSGCRRWLVVMRDTLTHEVAACR
DATDGSRSERRK

Sequences:

>Translated_92_residues
MASLVPCPNCGRRPKEEFTIKGAALSRPGADADSENWFDYVYLRDNPRGAYEEYWHHTSGCRRWLVVMRDTLTHEVAACR
DATDGSRSERRK
>Mature_91_residues
ASLVPCPNCGRRPKEEFTIKGAALSRPGADADSENWFDYVYLRDNPRGAYEEYWHHTSGCRRWLVVMRDTLTHEVAACRD
ATDGSRSERRK

Specific function: Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10- methylenetetrahydrofolate [H]

COG id: COG4311

COG function: function code E; Sarcosine oxidase delta subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006279 [H]

Pfam domain/function: PF04267 SoxD [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 10591; Mature: 10460

Theoretical pI: Translated: 7.96; Mature: 7.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
4.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASLVPCPNCGRRPKEEFTIKGAALSRPGADADSENWFDYVYLRDNPRGAYEEYWHHTSG
CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
CRRWLVVMRDTLTHEVAACRDATDGSRSERRK
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
ASLVPCPNCGRRPKEEFTIKGAALSRPGADADSENWFDYVYLRDNPRGAYEEYWHHTSG
CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
CRRWLVVMRDTLTHEVAACRDATDGSRSERRK
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]