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The map label for this gene is ynhG [H]

Identifier: 150398463

GI number: 150398463

Start: 3452834

End: 3453508

Strand: Reverse

Name: ynhG [H]

Synonym: Smed_3271

Alternate gene names: 150398463

Gene position: 3453508-3452834 (Counterclockwise)

Preceding gene: 150398465

Following gene: 150398455

Centisome position: 91.32

GC content: 62.07

Gene sequence:

>675_bases
ATGCGCTTCCGCAACGCTCTCCTTCTGTGCAGCCTGGCGGCCACCCTTGGCCTGACCGGCTGTTCACAGACCACAACCAC
GGCCGGCTCTCCTACCGAGGGCGAAAAAGTGGCGACGAATCAGATATTCTCCAGCAATTATGGCCCTGTTGAGGACCACG
GATATGCGGTTCCAGGCGTCCCGATCAACCGCGTAGACCAGCGTTTCCACCGGCAGATCGTGGATTACCCGACAAAGGAA
CGTCCCGGAACGATCGTCGTCAACACGCCAAGCCGCTTCCTCTATTACGTGCTGCCGGGTGGGAAAGCGGTTCGCTACGG
GATCGGGGTCGGCAAGCAGGGTTTCGCCTGGGAAGGCGAGGCCTATGTTGCCTGGAAGCAGGAATGGCCGACCTGGCATC
CGCCGAAGGAAATGGCCGAGCGCAAGCCGGAAGTCGCTAGATATGTCGATGCCGGCATGGGTCCGGGTATCGGTAACCCA
CTCGGCGCGCGCGCCCTCTACCTCTTCAACAAGGAGGGCAAGGACACGCTGTTCCGCCTGCACGGCACGCCTGAATGGTC
CTCCATCGGTACCGCCGCCTCGTCCGGCTGCATACGCCTGATGAACCAGGACATCATGGATCTCTATTCACGGGTCCGCC
CCGGCCGCAGCGCACGCGTCGTCGTGCAGCAGTAA

Upstream 100 bases:

>100_bases
CGGGTCCCTTGCGCAGTGCGGTGCAATAGAAAATAAGCTGTGCCGCTGACGGCCGGACTTCCTCCCCCGTATTTTTCCTG
ACCTCTTTTACGAGACCATC

Downstream 100 bases:

>100_bases
GCGTTTGGGCCGGAAGTGGAGAGGGCCGCCGGTGAATGCCGACGGCCCTTTCTTATTGGCTTGAAGCGGCACGACGCAAG
GACGCGGCGGTTCCCCGCTA

Product: ErfK/YbiS/YcfS/YnhG family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MRFRNALLLCSLAATLGLTGCSQTTTTAGSPTEGEKVATNQIFSSNYGPVEDHGYAVPGVPINRVDQRFHRQIVDYPTKE
RPGTIVVNTPSRFLYYVLPGGKAVRYGIGVGKQGFAWEGEAYVAWKQEWPTWHPPKEMAERKPEVARYVDAGMGPGIGNP
LGARALYLFNKEGKDTLFRLHGTPEWSSIGTAASSGCIRLMNQDIMDLYSRVRPGRSARVVVQQ

Sequences:

>Translated_224_residues
MRFRNALLLCSLAATLGLTGCSQTTTTAGSPTEGEKVATNQIFSSNYGPVEDHGYAVPGVPINRVDQRFHRQIVDYPTKE
RPGTIVVNTPSRFLYYVLPGGKAVRYGIGVGKQGFAWEGEAYVAWKQEWPTWHPPKEMAERKPEVARYVDAGMGPGIGNP
LGARALYLFNKEGKDTLFRLHGTPEWSSIGTAASSGCIRLMNQDIMDLYSRVRPGRSARVVVQQ
>Mature_224_residues
MRFRNALLLCSLAATLGLTGCSQTTTTAGSPTEGEKVATNQIFSSNYGPVEDHGYAVPGVPINRVDQRFHRQIVDYPTKE
RPGTIVVNTPSRFLYYVLPGGKAVRYGIGVGKQGFAWEGEAYVAWKQEWPTWHPPKEMAERKPEVARYVDAGMGPGIGNP
LGARALYLFNKEGKDTLFRLHGTPEWSSIGTAASSGCIRLMNQDIMDLYSRVRPGRSARVVVQQ

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1787968, Length=139, Percent_Identity=37.410071942446, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1787356, Length=149, Percent_Identity=34.8993288590604, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788299, Length=146, Percent_Identity=35.6164383561644, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01476 LysM; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 24676; Mature: 24676

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFRNALLLCSLAATLGLTGCSQTTTTAGSPTEGEKVATNQIFSSNYGPVEDHGYAVPGV
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEECCCC
PINRVDQRFHRQIVDYPTKERPGTIVVNTPSRFLYYVLPGGKAVRYGIGVGKQGFAWEGE
CHHHHHHHHHHHHHCCCCCCCCCEEEEECCCEEEEEEECCCCEEEEECCCCCCCCEECCC
AYVAWKQEWPTWHPPKEMAERKPEVARYVDAGMGPGIGNPLGARALYLFNKEGKDTLFRL
EEEEECCCCCCCCCHHHHHHCCHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCEEEEE
HGTPEWSSIGTAASSGCIRLMNQDIMDLYSRVRPGRSARVVVQQ
ECCCCHHHHCCHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEC
>Mature Secondary Structure
MRFRNALLLCSLAATLGLTGCSQTTTTAGSPTEGEKVATNQIFSSNYGPVEDHGYAVPGV
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEECCCC
PINRVDQRFHRQIVDYPTKERPGTIVVNTPSRFLYYVLPGGKAVRYGIGVGKQGFAWEGE
CHHHHHHHHHHHHHCCCCCCCCCEEEEECCCEEEEEEECCCCEEEEECCCCCCCCEECCC
AYVAWKQEWPTWHPPKEMAERKPEVARYVDAGMGPGIGNPLGARALYLFNKEGKDTLFRL
EEEEECCCCCCCCCHHHHHHCCHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCEEEEE
HGTPEWSSIGTAASSGCIRLMNQDIMDLYSRVRPGRSARVVVQQ
ECCCCHHHHCCHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 9097039 [H]