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The map label for this gene is rhiR [H]

Identifier: 150398334

GI number: 150398334

Start: 3292227

End: 3292967

Strand: Reverse

Name: rhiR [H]

Synonym: Smed_3140

Alternate gene names: 150398334

Gene position: 3292967-3292227 (Counterclockwise)

Preceding gene: 150398335

Following gene: 150398333

Centisome position: 87.07

GC content: 59.11

Gene sequence:

>741_bases
ATGAATATCACGTTGCTCGTACAGTTTCTGGCGCTTCTGGAAGAGATGAAGACGCGCGAGGAGATTCTGCCCGAGTTCGA
GCGCCTGCTCGACCGCTGCGGCTTCGATTTTTACGGTGTCGTGCGTCAGCCGAAACCGCATGAGAATCCACTCAGGCTCC
TTCTGGCCGGACGCTGGCCGGAGGGTTGGCCGCAAATTTACATTCGCAAGAAATACGTCGTCATAGATCCTACGATCCGC
TTCCTCGGACATGCCCAGCGCGGTTTCCGCTGGCGCGACACGCTCGTGGCCTTCCGTTCGGACCCGCACCGCAAGCGCAT
GGAAAGCATGATGATCGAGGCACGCAATCACGGCCTCTTCGACGGCTACATTTTTCCGGTGCACGGCCGCCGCGGACTCA
TGGGCAATCTGACGGTAGGGGGGCGGGTGGTCGATCTGAGCCCGGTGGAATTGAGCCTTTTCGACGCCATCGCAAAGCGG
CTGTTCTGGAAGCTGCTCGAACTCACCGATCCGGAGATCATGGCGGAGCTCGTCTCGCGCGTCGAAGTCCAGATGACGCG
GCGTGAAATGGAAGCGCTCCATTACCTCGCCGACGGCATGACGTCGAACGACATCGGCAAGGTCCTGGATATTTCGAGCC
ATACCGTCGACTGGTACATGAACGGCATTCAGGAAAAACTGAAGGCGAAAAACCGGCACCATGTGGTGGCGCTCGCCTTC
CGCCTGGGACTGATCTCGTGA

Upstream 100 bases:

>100_bases
TATGAAGAATTATCGCGGTTGCAACATGAATGGCTTCTGAACGGCGTGTTCACCTGGCCTGGAGGGGTTGCGTTGCGCGT
TTTTGATTTGAGGGTGCTCT

Downstream 100 bases:

>100_bases
CTTGATGGTCAAACACCGTCTCCCGCCCCTCCTGACCGAATGGGTCAGGATTCATGTCGCGTCTGAAATTGCACTTCATT
CCTCGACTCGCTAATAGTCT

Product: regulatory protein LuxR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MNITLLVQFLALLEEMKTREEILPEFERLLDRCGFDFYGVVRQPKPHENPLRLLLAGRWPEGWPQIYIRKKYVVIDPTIR
FLGHAQRGFRWRDTLVAFRSDPHRKRMESMMIEARNHGLFDGYIFPVHGRRGLMGNLTVGGRVVDLSPVELSLFDAIAKR
LFWKLLELTDPEIMAELVSRVEVQMTRREMEALHYLADGMTSNDIGKVLDISSHTVDWYMNGIQEKLKAKNRHHVVALAF
RLGLIS

Sequences:

>Translated_246_residues
MNITLLVQFLALLEEMKTREEILPEFERLLDRCGFDFYGVVRQPKPHENPLRLLLAGRWPEGWPQIYIRKKYVVIDPTIR
FLGHAQRGFRWRDTLVAFRSDPHRKRMESMMIEARNHGLFDGYIFPVHGRRGLMGNLTVGGRVVDLSPVELSLFDAIAKR
LFWKLLELTDPEIMAELVSRVEVQMTRREMEALHYLADGMTSNDIGKVLDISSHTVDWYMNGIQEKLKAKNRHHVVALAF
RLGLIS
>Mature_246_residues
MNITLLVQFLALLEEMKTREEILPEFERLLDRCGFDFYGVVRQPKPHENPLRLLLAGRWPEGWPQIYIRKKYVVIDPTIR
FLGHAQRGFRWRDTLVAFRSDPHRKRMESMMIEARNHGLFDGYIFPVHGRRGLMGNLTVGGRVVDLSPVELSLFDAIAKR
LFWKLLELTDPEIMAELVSRVEVQMTRREMEALHYLADGMTSNDIGKVLDISSHTVDWYMNGIQEKLKAKNRHHVVALAF
RLGLIS

Specific function: Positive regulator of the rhiABC operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788224, Length=247, Percent_Identity=27.9352226720648, Blast_Score=94, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR005143
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03472 Autoind_bind; PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 28667; Mature: 28667

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNITLLVQFLALLEEMKTREEILPEFERLLDRCGFDFYGVVRQPKPHENPLRLLLAGRWP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCEEEEEECCCC
EGWPQIYIRKKYVVIDPTIRFLGHAQRGFRWRDTLVAFRSDPHRKRMESMMIEARNHGLF
CCCCEEEEEEEEEEECCHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
DGYIFPVHGRRGLMGNLTVGGRVVDLSPVELSLFDAIAKRLFWKLLELTDPEIMAELVSR
CCEEEEECCCCCCEECEEECCEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
VEVQMTRREMEALHYLADGMTSNDIGKVLDISSHTVDWYMNGIQEKLKAKNRHHVVALAF
HHHHHHHHHHHHHHHHHCCCCCCCCHHEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHH
RLGLIS
HHHCCC
>Mature Secondary Structure
MNITLLVQFLALLEEMKTREEILPEFERLLDRCGFDFYGVVRQPKPHENPLRLLLAGRWP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCEEEEEECCCC
EGWPQIYIRKKYVVIDPTIRFLGHAQRGFRWRDTLVAFRSDPHRKRMESMMIEARNHGLF
CCCCEEEEEEEEEEECCHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
DGYIFPVHGRRGLMGNLTVGGRVVDLSPVELSLFDAIAKRLFWKLLELTDPEIMAELVSR
CCEEEEECCCCCCEECEEECCEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
VEVQMTRREMEALHYLADGMTSNDIGKVLDISSHTVDWYMNGIQEKLKAKNRHHVVALAF
HHHHHHHHHHHHHHHHHCCCCCCCCHHEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHH
RLGLIS
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1597418 [H]