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The map label for this gene is ydeB [H]

Identifier: 150398306

GI number: 150398306

Start: 3259740

End: 3260309

Strand: Reverse

Name: ydeB [H]

Synonym: Smed_3112

Alternate gene names: 150398306

Gene position: 3260309-3259740 (Counterclockwise)

Preceding gene: 150398307

Following gene: 150398305

Centisome position: 86.21

GC content: 58.6

Gene sequence:

>570_bases
ATGACCACCCAGCAGAAGAAATCTTCAACGCGCCAAGGCTTCAAGACCGGTGAATCGATCGTTTATCCGGCTCATGGCGT
TGGCCAGATCGTCGCGATCGAGGAACAGGAAGTCGCGGGCATGAAGCTCGAACTTTTCGTCATCGACTTCGAGAAGGATA
AGATGCGCCTCAAGGTCCCCGTGGCGAAGGCTGTGGGTATCGGTATGCGCAAGCTGTCCGAAACCGATTTCGTCGACCGC
GCGTTGAAGGTCGTGCAGGGCAAGGCGCGCGTGAAACGGACCATGTGGTCGCGGCGTGCCCAGGAGTACGATGCCAAGAT
CAACTCCGGCGACCTCATTTCCATCGCGGAAGTGGTGCGCGATCTTTATCGTGCCGAAAACCAGCCGGAGCAGTCCTATT
CCGAGCGCCAGCTCTATGAAGCCGCGCTTGACCGGATGGCGCGCGAAATCGCTGCCGTGAACAAGATGTCGGAGACTGAA
GCCGTTCGTCTCGTCGAGGCCCATCTCAACAAGGGTCCGAAACGCGGCAAGGCTATCGAAGAAGACGACGCACAGGACGA
AGCCGCCTAG

Upstream 100 bases:

>100_bases
AGGTGGACCCACCCGGCGGTATCCCCGTCTATCCCGGGCCTGACTGACCCGGCCCCGGCTCATGAGAGGCCGGGTGCGCA
CTAGGGAGTGTACGAAACGA

Downstream 100 bases:

>100_bases
ATCGCGGTTTGTCAGGTCGGATCGACCTAGAACAGGACGTGATCGGTTTCAAAGAGTTGAGAAGCGAACAAAAAACCCGG
CCGCAGGCCGGGTTTTTTGT

Product: CarD family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MTTQQKKSSTRQGFKTGESIVYPAHGVGQIVAIEEQEVAGMKLELFVIDFEKDKMRLKVPVAKAVGIGMRKLSETDFVDR
ALKVVQGKARVKRTMWSRRAQEYDAKINSGDLISIAEVVRDLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKMSETE
AVRLVEAHLNKGPKRGKAIEEDDAQDEAA

Sequences:

>Translated_189_residues
MTTQQKKSSTRQGFKTGESIVYPAHGVGQIVAIEEQEVAGMKLELFVIDFEKDKMRLKVPVAKAVGIGMRKLSETDFVDR
ALKVVQGKARVKRTMWSRRAQEYDAKINSGDLISIAEVVRDLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKMSETE
AVRLVEAHLNKGPKRGKAIEEDDAQDEAA
>Mature_188_residues
TTQQKKSSTRQGFKTGESIVYPAHGVGQIVAIEEQEVAGMKLELFVIDFEKDKMRLKVPVAKAVGIGMRKLSETDFVDRA
LKVVQGKARVKRTMWSRRAQEYDAKINSGDLISIAEVVRDLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKMSETEA
VRLVEAHLNKGPKRGKAIEEDDAQDEAA

Specific function: Unknown

COG id: COG1329

COG function: function code K; Transcriptional regulators, similar to M. xanthus CarD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003711 [H]

Pfam domain/function: PF02559 CarD_TRCF [H]

EC number: NA

Molecular weight: Translated: 21258; Mature: 21126

Theoretical pI: Translated: 8.79; Mature: 8.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTQQKKSSTRQGFKTGESIVYPAHGVGQIVAIEEQEVAGMKLELFVIDFEKDKMRLKVP
CCCCHHHHHHHHHHCCCCCEEECCCCCCEEEEECCCCCCCEEEEEEEEEECCCCEEEECC
VAKAVGIGMRKLSETDFVDRALKVVQGKARVKRTMWSRRAQEYDAKINSGDLISIAEVVR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
DLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKMSETEAVRLVEAHLNKGPKRGKAIE
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
EDDAQDEAA
CCCCCCCCC
>Mature Secondary Structure 
TTQQKKSSTRQGFKTGESIVYPAHGVGQIVAIEEQEVAGMKLELFVIDFEKDKMRLKVP
CCCHHHHHHHHHHCCCCCEEECCCCCCEEEEECCCCCCCEEEEEEEEEECCCCEEEECC
VAKAVGIGMRKLSETDFVDRALKVVQGKARVKRTMWSRRAQEYDAKINSGDLISIAEVVR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
DLYRAENQPEQSYSERQLYEAALDRMAREIAAVNKMSETEAVRLVEAHLNKGPKRGKAIE
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
EDDAQDEAA
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]