Click here to switch to the map view.

The map label for this gene is 150398186

Identifier: 150398186

GI number: 150398186

Start: 3135916

End: 3136494

Strand: Direct

Name: 150398186

Synonym: Smed_2989

Alternate gene names: NA

Gene position: 3135916-3136494 (Clockwise)

Preceding gene: 150398185

Following gene: 150398187

Centisome position: 82.92

GC content: 55.79

Gene sequence:

>579_bases
ATGAATCCAGGAAAATGGACTCACCTGTGCATAGATATGCAACGCATGTTCGCCGAAACCACCCCCTGGCAAGTCGCCTG
GATACCCAAGGTGTTCGATCAGGTTGCCGAGGTTGCGACCCGATTTCCCGATCGCACTATATTCACACGTTTCGTGCCGC
CGTCCTCCCCAGAGGAGATGGCGGGCATGTGGAGGCCATACTACGAAAAGTGGCCGATGATGACGACCAGCGAACTGGAC
CCCGCTTTGGTGGATCTTGTTCCGGACCTGAAAAGGTTGGTTCCGCCCGCCCGCCTTTTCGACAAGACCACTTACTCGCC
TTGGACCAGCGGTCGATTACATACCGCGTTGCTTCATCAGGGTATTGGAACGCTGGTCGTAACAGGAGGCGAGACGGACA
TCTGTGTGCTGGCCACGACGCTCGGGGCTGTCGATCTCGGTTACAAGGTCGTCCTGCTGAAGGACGCGCTGTGGAGTACG
ACTGATCAAACGCACGACGCATCGCTGCAACTTCTGGGCAATCGGTTTTCAGTTCAAGTGGAGGTCATAAACACGGAAGA
ATGGCTGTCCTCACTTTAG

Upstream 100 bases:

>100_bases
CGCCCTTGCTCCGTACGAAGCCGGAACTCCGTTCCTCTCCTCGAGTTCTTACGATGATATTCGCTAGAGGTTCGCCGCCA
TCAGGAGCGCCGGGTACGAA

Downstream 100 bases:

>100_bases
GCGACGCAACAGAAACCGCGCTGCCTGCCAGCACCAGCTCTTGCAATAAGCCGCAAGAACATCCATATGCCATCCAAGTA
GATGGCAGGTGGCTGGAATG

Product: isochorismatase hydrolase

Products: NA

Alternate protein names: Isochorismatase; Isochorismatase Family Protein; Cysteine Hydrolase Family Protein; Hydrolase

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MNPGKWTHLCIDMQRMFAETTPWQVAWIPKVFDQVAEVATRFPDRTIFTRFVPPSSPEEMAGMWRPYYEKWPMMTTSELD
PALVDLVPDLKRLVPPARLFDKTTYSPWTSGRLHTALLHQGIGTLVVTGGETDICVLATTLGAVDLGYKVVLLKDALWST
TDQTHDASLQLLGNRFSVQVEVINTEEWLSSL

Sequences:

>Translated_192_residues
MNPGKWTHLCIDMQRMFAETTPWQVAWIPKVFDQVAEVATRFPDRTIFTRFVPPSSPEEMAGMWRPYYEKWPMMTTSELD
PALVDLVPDLKRLVPPARLFDKTTYSPWTSGRLHTALLHQGIGTLVVTGGETDICVLATTLGAVDLGYKVVLLKDALWST
TDQTHDASLQLLGNRFSVQVEVINTEEWLSSL
>Mature_192_residues
MNPGKWTHLCIDMQRMFAETTPWQVAWIPKVFDQVAEVATRFPDRTIFTRFVPPSSPEEMAGMWRPYYEKWPMMTTSELD
PALVDLVPDLKRLVPPARLFDKTTYSPWTSGRLHTALLHQGIGTLVVTGGETDICVLATTLGAVDLGYKVVLLKDALWST
TDQTHDASLQLLGNRFSVQVEVINTEEWLSSL

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21709; Mature: 21709

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPGKWTHLCIDMQRMFAETTPWQVAWIPKVFDQVAEVATRFPDRTIFTRFVPPSSPEEM
CCCCCHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
AGMWRPYYEKWPMMTTSELDPALVDLVPDLKRLVPPARLFDKTTYSPWTSGRLHTALLHQ
HHHCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCHHHHHHHC
GIGTLVVTGGETDICVLATTLGAVDLGYKVVLLKDALWSTTDQTHDASLQLLGNRFSVQV
CCCEEEEECCCCCEEEEEHHHHHHHCCEEEEEEECHHHCCCCCCCCCHHEEECCEEEEEE
EVINTEEWLSSL
EEECHHHHHHCC
>Mature Secondary Structure
MNPGKWTHLCIDMQRMFAETTPWQVAWIPKVFDQVAEVATRFPDRTIFTRFVPPSSPEEM
CCCCCHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
AGMWRPYYEKWPMMTTSELDPALVDLVPDLKRLVPPARLFDKTTYSPWTSGRLHTALLHQ
HHHCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCHHHHHHHC
GIGTLVVTGGETDICVLATTLGAVDLGYKVVLLKDALWSTTDQTHDASLQLLGNRFSVQV
CCCEEEEECCCCCEEEEEHHHHHHHCCEEEEEEECHHHCCCCCCCCCHHEEECCEEEEEE
EVINTEEWLSSL
EEECHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA