Click here to switch to the map view.

The map label for this gene is yecS [H]

Identifier: 150398177

GI number: 150398177

Start: 3128048

End: 3128719

Strand: Direct

Name: yecS [H]

Synonym: Smed_2980

Alternate gene names: 150398177

Gene position: 3128048-3128719 (Clockwise)

Preceding gene: 150398176

Following gene: 150398178

Centisome position: 82.71

GC content: 59.52

Gene sequence:

>672_bases
ATGAATCTCATCAATACCTTCTTCAATGTCAAAGTGCTGCTGGACAGCTTGCCACAGCTGTTGTGGGGGCTCGCCGTGAC
GCTTCAGATCGGCATCACGAGTATATTGTGCGGGCTCGCCGGCGGTCTGTTTCTGGCAGTCGCCCGTCTTTACTCGCCGC
CGTTCTGCCAGTTCCTGATCCGGACCTATGTCGATGTTTTTCGATCGATCCCGCTGCTGGTCCTTCTCATCGTCGTCTAT
TATGCGCTTCCTTTCGTGGGCATCAGGCTCTCGCCGTTTCTTTCCGCGGTGACCTCGCTCAGCCTCGTCTCGGCCGCCTA
TACGGCGGAGATCTTCCGCGCCGGCATCGAGGCGATCCCGCACGGCCAGTTCGAGGCTTCTGCGGCGCTTGGCCTTTCCA
ACAGACACACCATGGTCGACGTCATCCTTCCTCAGGCGGTCCGCATCGTCATTCCACCGCTCACCAACAATTGCATCAAT
GTCCTCAAGGACACTGCACTTGCCTCCGTCGTCGCCATGCCGGACCTGCTGAAGCAGGCGACCCAGGCACAGGCACTTGC
CGCCAACCCGACACCGCTGATCGGAGCCGCCATCATCTACGTGATGCTGCTCTGGCCGATGGTGATCGTCGTTGGCAGGC
TCGAGACGATTTTCAGCCGGGGGAGACGATGA

Upstream 100 bases:

>100_bases
CCGTTCCAAAGAATCGAGACGCGGGATGGGGGCGGAAAACCGCACATAGCTTCCTCATCCCGCTCTCGGGAGCCTTCTCG
GCCAAGGGAGCCTTGCCGGC

Downstream 100 bases:

>100_bases
TGGCTGCTCTGATTTCGATTCGCGGACTGAAGAAGGCGTTCGGCCGCTTCATGGTCTTGCATGGCATCGATCTCGATATC
GCCGAGGGCGAGGTCGTCTG

Product: polar amino acid ABC transporter inner membrane subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MNLINTFFNVKVLLDSLPQLLWGLAVTLQIGITSILCGLAGGLFLAVARLYSPPFCQFLIRTYVDVFRSIPLLVLLIVVY
YALPFVGIRLSPFLSAVTSLSLVSAAYTAEIFRAGIEAIPHGQFEASAALGLSNRHTMVDVILPQAVRIVIPPLTNNCIN
VLKDTALASVVAMPDLLKQATQAQALAANPTPLIGAAIIYVMLLWPMVIVVGRLETIFSRGRR

Sequences:

>Translated_223_residues
MNLINTFFNVKVLLDSLPQLLWGLAVTLQIGITSILCGLAGGLFLAVARLYSPPFCQFLIRTYVDVFRSIPLLVLLIVVY
YALPFVGIRLSPFLSAVTSLSLVSAAYTAEIFRAGIEAIPHGQFEASAALGLSNRHTMVDVILPQAVRIVIPPLTNNCIN
VLKDTALASVVAMPDLLKQATQAQALAANPTPLIGAAIIYVMLLWPMVIVVGRLETIFSRGRR
>Mature_223_residues
MNLINTFFNVKVLLDSLPQLLWGLAVTLQIGITSILCGLAGGLFLAVARLYSPPFCQFLIRTYVDVFRSIPLLVLLIVVY
YALPFVGIRLSPFLSAVTSLSLVSAAYTAEIFRAGIEAIPHGQFEASAALGLSNRHTMVDVILPQAVRIVIPPLTNNCIN
VLKDTALASVVAMPDLLKQATQAQALAANPTPLIGAAIIYVMLLWPMVIVVGRLETIFSRGRR

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=216, Percent_Identity=40.7407407407407, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1786873, Length=182, Percent_Identity=39.010989010989, Blast_Score=117, Evalue=8e-28,
Organism=Escherichia coli, GI1788645, Length=226, Percent_Identity=35.3982300884956, Blast_Score=113, Evalue=9e-27,
Organism=Escherichia coli, GI1787030, Length=177, Percent_Identity=35.0282485875706, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI87082239, Length=207, Percent_Identity=32.8502415458937, Blast_Score=104, Evalue=4e-24,
Organism=Escherichia coli, GI48994930, Length=93, Percent_Identity=47.3118279569892, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1787086, Length=221, Percent_Identity=29.4117647058824, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI1786874, Length=173, Percent_Identity=31.2138728323699, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1788646, Length=183, Percent_Identity=30.0546448087432, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI1787087, Length=224, Percent_Identity=28.125, Blast_Score=85, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24144; Mature: 24144

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLINTFFNVKVLLDSLPQLLWGLAVTLQIGITSILCGLAGGLFLAVARLYSPPFCQFLI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
RTYVDVFRSIPLLVLLIVVYYALPFVGIRLSPFLSAVTSLSLVSAAYTAEIFRAGIEAIP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
HGQFEASAALGLSNRHTMVDVILPQAVRIVIPPLTNNCINVLKDTALASVVAMPDLLKQA
CCCCHHHHHHCCCCCHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
TQAQALAANPTPLIGAAIIYVMLLWPMVIVVGRLETIFSRGRR
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNLINTFFNVKVLLDSLPQLLWGLAVTLQIGITSILCGLAGGLFLAVARLYSPPFCQFLI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
RTYVDVFRSIPLLVLLIVVYYALPFVGIRLSPFLSAVTSLSLVSAAYTAEIFRAGIEAIP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
HGQFEASAALGLSNRHTMVDVILPQAVRIVIPPLTNNCINVLKDTALASVVAMPDLLKQA
CCCCHHHHHHCCCCCHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
TQAQALAANPTPLIGAAIIYVMLLWPMVIVVGRLETIFSRGRR
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]