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The map label for this gene is atpD

Identifier: 150398119

GI number: 150398119

Start: 3066033

End: 3067562

Strand: Reverse

Name: atpD

Synonym: Smed_2922

Alternate gene names: 150398119

Gene position: 3067562-3066033 (Counterclockwise)

Preceding gene: 150398120

Following gene: 150398118

Centisome position: 81.11

GC content: 62.75

Gene sequence:

>1530_bases
ATGGCTAAGGCAGCTACCCCGAAAGAAACCGCAGCGGCGAAGAAGCCAGCTGCTCCGAAGAAGGCAGCTTCCGCCAAGAC
AGCTTCTGCCACCACAGTCGTTGCGGCTACGGGTGCTGTCGGCCGCGTGACGCAGGTCATCGGCGCCGTCGTCGACGTGG
CTTTCGAAGAAGGCCAGCTCCCGAAGATCCTGAACGCACTGGAAACCGACAATAACGGCAACCGCCTCGTTCTCGAAGTC
GCGCAGCATCTCGGCGAAAATTCGGTCCGCACGATTGCCATGGACTCGACGGAAGGTCTCGTTCGCGGCCAGAAGGTCAC
CGACACGGGCGCCCCGATCGCGGTTCCGGTCGGCAAGGAAACGCTCGGACGCATCATGAACGTCATCGGCGAGCCGGTCG
ACGAAGCCGGTCCGCTCAAGACCTCCGCGCGCCGCGCGATCCACCAGGATGCGCCGGCCTATGTCGACCAGTCGACGGAA
GCGCAGATCCTCGTTACCGGCATCAAGGTTGTCGACCTGTTGGCTCCTTACGCCAAGGGCGGCAAGATCGGCCTCTTCGG
CGGCGCAGGTGTGGGCAAGACCGTTCTGATCATGGAACTGATCAACAACGTCGCCAAGGCGCATGGCGGTTACTCCGTCT
TCGCAGGTGTCGGTGAACGGACCCGCGAAGGAAACGACCTGTACCACGAAATGATCGAATCCGGCGTGAACAAGCACGGC
GGCGGCGAAGGCTCCAAGGCTGCGCTCGTTTACGGTCAGATGAACGAACCGCCGGGCGCCCGTGCGCGCGTCGCGCTGAC
CGGCCTGACGGTCGCCGAACAGTTCCGCGACGAAGGCCAGGACGTTCTGTTCTTCGTGGACAACATCTTCCGCTTTACCC
AGGCAGGTTCGGAAGTGTCGGCTCTTCTCGGCCGTATTCCTTCGGCCGTGGGTTATCAGCCGACGCTGGCCACGGACATG
GGTCAAATGCAGGAGCGCATCACCACCACCACCAAGGGCTCTATCACTTCGGTTCAGGCGATCTACGTTCCCGCCGACGA
TTTGACCGACCCCGCACCGGCGACCTCGTTCGCCCACCTGGACGCAACGACCGTTCTGTCGCGCTCGATCGCCGAAAAGG
GTATCTACCCGGCCGTGGACCCGCTCGACTCGACCTCGCGCATGCTCGACCCGATGGTCGTCGGAGAAGAGCATTACGAA
GTCGCGCGTAAGGTCCAGGGCACGCTGCAGCGCTACAAGGCGCTCCAGGACATCATCGCCATCCTGGGCATGGACGAACT
TTCCGAAGAGGACAAGATCGCCGTTGCCCGCGCCCGCAAGATCGAGCGCTTCCTGTCGCAGCCGTTCTTCGTCGCCGAAG
TCTTCACCGGTTCGCCGGGCAAGCTGGTCGCGCTCGAAGATACGATCAAGGGCTTCAAGGGCCTCGTCAACGGCGAGTAC
GACCACCTGCCGGAAGCCGCCTTCTACATGGTCGGTTCCATCGAGGAAGCCGTCGAGAAGGCCAAGAAGCTGGCTGCCGA
AGCCGCTTAA

Upstream 100 bases:

>100_bases
CAACTACAACCGTCAGCGGCAGGCGCAGATCACCAAGGAACTCATTGAAATCATCTCTGGCGCGGAAGCGCTCTAAGGTT
ACGAGAAGAGGGTAAGAATT

Downstream 100 bases:

>100_bases
ACTGCCTCGTGAACCGTGGCGCGCACATTTCGCGCCACGGCCTTCGTCCCGCCGCGATCAGTGACGGCGGAGAACGTGCA
CAGCCCGCCGACCCGCGGCG

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta

Number of amino acids: Translated: 509; Mature: 508

Protein sequence:

>509_residues
MAKAATPKETAAAKKPAAPKKAASAKTASATTVVAATGAVGRVTQVIGAVVDVAFEEGQLPKILNALETDNNGNRLVLEV
AQHLGENSVRTIAMDSTEGLVRGQKVTDTGAPIAVPVGKETLGRIMNVIGEPVDEAGPLKTSARRAIHQDAPAYVDQSTE
AQILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVNKHG
GGEGSKAALVYGQMNEPPGARARVALTGLTVAEQFRDEGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDM
GQMQERITTTTKGSITSVQAIYVPADDLTDPAPATSFAHLDATTVLSRSIAEKGIYPAVDPLDSTSRMLDPMVVGEEHYE
VARKVQGTLQRYKALQDIIAILGMDELSEEDKIAVARARKIERFLSQPFFVAEVFTGSPGKLVALEDTIKGFKGLVNGEY
DHLPEAAFYMVGSIEEAVEKAKKLAAEAA

Sequences:

>Translated_509_residues
MAKAATPKETAAAKKPAAPKKAASAKTASATTVVAATGAVGRVTQVIGAVVDVAFEEGQLPKILNALETDNNGNRLVLEV
AQHLGENSVRTIAMDSTEGLVRGQKVTDTGAPIAVPVGKETLGRIMNVIGEPVDEAGPLKTSARRAIHQDAPAYVDQSTE
AQILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVNKHG
GGEGSKAALVYGQMNEPPGARARVALTGLTVAEQFRDEGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDM
GQMQERITTTTKGSITSVQAIYVPADDLTDPAPATSFAHLDATTVLSRSIAEKGIYPAVDPLDSTSRMLDPMVVGEEHYE
VARKVQGTLQRYKALQDIIAILGMDELSEEDKIAVARARKIERFLSQPFFVAEVFTGSPGKLVALEDTIKGFKGLVNGEY
DHLPEAAFYMVGSIEEAVEKAKKLAAEAA
>Mature_508_residues
AKAATPKETAAAKKPAAPKKAASAKTASATTVVAATGAVGRVTQVIGAVVDVAFEEGQLPKILNALETDNNGNRLVLEVA
QHLGENSVRTIAMDSTEGLVRGQKVTDTGAPIAVPVGKETLGRIMNVIGEPVDEAGPLKTSARRAIHQDAPAYVDQSTEA
QILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVNKHGG
GEGSKAALVYGQMNEPPGARARVALTGLTVAEQFRDEGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG
QMQERITTTTKGSITSVQAIYVPADDLTDPAPATSFAHLDATTVLSRSIAEKGIYPAVDPLDSTSRMLDPMVVGEEHYEV
ARKVQGTLQRYKALQDIIAILGMDELSEEDKIAVARARKIERFLSQPFFVAEVFTGSPGKLVALEDTIKGFKGLVNGEYD
HLPEAAFYMVGSIEEAVEKAKKLAAEAA

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family

Homologues:

Organism=Homo sapiens, GI32189394, Length=497, Percent_Identity=78.0684104627767, Blast_Score=757, Evalue=0.0,
Organism=Homo sapiens, GI19913424, Length=302, Percent_Identity=28.1456953642384, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI50345984, Length=297, Percent_Identity=25.5892255892256, Blast_Score=100, Evalue=5e-21,
Organism=Homo sapiens, GI4757810, Length=297, Percent_Identity=25.5892255892256, Blast_Score=100, Evalue=5e-21,
Organism=Homo sapiens, GI19913428, Length=375, Percent_Identity=24.8, Blast_Score=89, Evalue=9e-18,
Organism=Homo sapiens, GI19913426, Length=407, Percent_Identity=24.5700245700246, Blast_Score=87, Evalue=3e-17,
Organism=Escherichia coli, GI1790170, Length=466, Percent_Identity=71.6738197424893, Blast_Score=682, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=426, Percent_Identity=27.2300469483568, Blast_Score=128, Evalue=8e-31,
Organism=Escherichia coli, GI1790172, Length=442, Percent_Identity=25.5656108597285, Blast_Score=110, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI25144756, Length=473, Percent_Identity=76.7441860465116, Blast_Score=729, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17565854, Length=302, Percent_Identity=28.8079470198675, Blast_Score=114, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17510931, Length=357, Percent_Identity=24.3697478991597, Blast_Score=98, Evalue=8e-21,
Organism=Caenorhabditis elegans, GI71988080, Length=320, Percent_Identity=23.4375, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI71988063, Length=320, Percent_Identity=23.4375, Blast_Score=97, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17570191, Length=357, Percent_Identity=23.8095238095238, Blast_Score=93, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI71988074, Length=272, Percent_Identity=22.4264705882353, Blast_Score=77, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6322581, Length=495, Percent_Identity=73.5353535353535, Blast_Score=730, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6319370, Length=407, Percent_Identity=24.0786240786241, Blast_Score=98, Evalue=3e-21,
Organism=Saccharomyces cerevisiae, GI6319603, Length=375, Percent_Identity=24.5333333333333, Blast_Score=96, Evalue=1e-20,
Organism=Saccharomyces cerevisiae, GI6320016, Length=250, Percent_Identity=26, Blast_Score=75, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24638766, Length=470, Percent_Identity=80.6382978723404, Blast_Score=753, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=495, Percent_Identity=69.4949494949495, Blast_Score=681, Evalue=0.0,
Organism=Drosophila melanogaster, GI24638768, Length=91, Percent_Identity=74.7252747252747, Blast_Score=134, Evalue=1e-31,
Organism=Drosophila melanogaster, GI20129479, Length=320, Percent_Identity=27.8125, Blast_Score=115, Evalue=5e-26,
Organism=Drosophila melanogaster, GI24583988, Length=304, Percent_Identity=29.2763157894737, Blast_Score=112, Evalue=8e-25,
Organism=Drosophila melanogaster, GI24583986, Length=304, Percent_Identity=29.2763157894737, Blast_Score=112, Evalue=8e-25,
Organism=Drosophila melanogaster, GI24583984, Length=304, Percent_Identity=29.2763157894737, Blast_Score=112, Evalue=8e-25,
Organism=Drosophila melanogaster, GI24583992, Length=307, Percent_Identity=27.6872964169381, Blast_Score=111, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24658560, Length=320, Percent_Identity=24.375, Blast_Score=96, Evalue=6e-20,
Organism=Drosophila melanogaster, GI281361666, Length=360, Percent_Identity=24.1666666666667, Blast_Score=92, Evalue=9e-19,
Organism=Drosophila melanogaster, GI24646341, Length=360, Percent_Identity=24.1666666666667, Blast_Score=92, Evalue=9e-19,
Organism=Drosophila melanogaster, GI17136796, Length=360, Percent_Identity=24.1666666666667, Blast_Score=92, Evalue=9e-19,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): ATPB_SINMW (A6UDM1)

Other databases:

- EMBL:   CP000738
- RefSeq:   YP_001328586.1
- ProteinModelPortal:   A6UDM1
- SMR:   A6UDM1
- STRING:   A6UDM1
- GeneID:   5323799
- GenomeReviews:   CP000738_GR
- KEGG:   smd:Smed_2922
- eggNOG:   COG0055
- HOGENOM:   HBG565875
- OMA:   IGQEHYD
- ProtClustDB:   PRK09280
- BioCyc:   SMED366394:SMED_2922-MONOMER
- HAMAP:   MF_01347
- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100
- PANTHER:   PTHR15184:SF8
- SMART:   SM00382
- TIGRFAMs:   TIGR01039

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N; SSF47917 ATPase_a/b_C; SSF50615 ATPase_a/b_N

EC number: =3.6.3.14

Molecular weight: Translated: 53685; Mature: 53554

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKAATPKETAAAKKPAAPKKAASAKTASATTVVAATGAVGRVTQVIGAVVDVAFEEGQL
CCCCCCCHHHHHCCCCCCCCHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCC
PKILNALETDNNGNRLVLEVAQHLGENSVRTIAMDSTEGLVRGQKVTDTGAPIAVPVGKE
HHHHHHHHCCCCCCEEHHHHHHHCCCCCEEEEEECCCCHHHCCCEECCCCCCEEEECCHH
TLGRIMNVIGEPVDEAGPLKTSARRAIHQDAPAYVDQSTEAQILVTGIKVVDLLAPYAKG
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHHHCCC
GKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVNKHG
CCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCC
GGEGSKAALVYGQMNEPPGARARVALTGLTVAEQFRDEGQDVLFFVDNIFRFTQAGSEVS
CCCCCCEEEEEECCCCCCCCCEEEEEEHHHHHHHHHHCCCEEEHHHHHHHHHHHCCHHHH
ALLGRIPSAVGYQPTLATDMGQMQERITTTTKGSITSVQAIYVPADDLTDPAPATSFAHL
HHHHHCCHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCHHH
DATTVLSRSIAEKGIYPAVDPLDSTSRMLDPMVVGEEHYEVARKVQGTLQRYKALQDIIA
HHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
ILGMDELSEEDKIAVARARKIERFLSQPFFVAEVFTGSPGKLVALEDTIKGFKGLVNGEY
HHCCHHCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEHHHHHHHHHHCCCCH
DHLPEAAFYMVGSIEEAVEKAKKLAAEAA
HCCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AKAATPKETAAAKKPAAPKKAASAKTASATTVVAATGAVGRVTQVIGAVVDVAFEEGQL
CCCCCCHHHHHCCCCCCCCHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCC
PKILNALETDNNGNRLVLEVAQHLGENSVRTIAMDSTEGLVRGQKVTDTGAPIAVPVGKE
HHHHHHHHCCCCCCEEHHHHHHHCCCCCEEEEEECCCCHHHCCCEECCCCCCEEEECCHH
TLGRIMNVIGEPVDEAGPLKTSARRAIHQDAPAYVDQSTEAQILVTGIKVVDLLAPYAKG
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHHHCCC
GKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVNKHG
CCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCC
GGEGSKAALVYGQMNEPPGARARVALTGLTVAEQFRDEGQDVLFFVDNIFRFTQAGSEVS
CCCCCCEEEEEECCCCCCCCCEEEEEEHHHHHHHHHHCCCEEEHHHHHHHHHHHCCHHHH
ALLGRIPSAVGYQPTLATDMGQMQERITTTTKGSITSVQAIYVPADDLTDPAPATSFAHL
HHHHHCCHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCHHH
DATTVLSRSIAEKGIYPAVDPLDSTSRMLDPMVVGEEHYEVARKVQGTLQRYKALQDIIA
HHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
ILGMDELSEEDKIAVARARKIERFLSQPFFVAEVFTGSPGKLVALEDTIKGFKGLVNGEY
HHCCHHCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEHHHHHHHHHHCCCCH
DHLPEAAFYMVGSIEEAVEKAKKLAAEAA
HCCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA