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The map label for this gene is ymfC [H]

Identifier: 150398041

GI number: 150398041

Start: 2969759

End: 2970490

Strand: Reverse

Name: ymfC [H]

Synonym: Smed_2843

Alternate gene names: 150398041

Gene position: 2970490-2969759 (Counterclockwise)

Preceding gene: 150398044

Following gene: 150398039

Centisome position: 78.54

GC content: 60.93

Gene sequence:

>732_bases
TTGCCCGAGCCCCTTCGCGACACGCGTACCCTGGTGATCCAGCTCCGCGACCGCATCGCCGATCTGATCCGGGATGAGGG
GCTCGTTCCCGGAGACAAGCTGCCGACAGAGGCGCAATTGACGGATCGCTTCAAGATTTCCCGTCCCGCGCTCAGGGAAG
CATTGAAGCTTCTGGAGCAGGATGGCGCCATCTATGTCGAGCACGGCCGTGGCCGGTTCGTTTCCGCGATTTCCGCCGTC
CATGTGGACAGGCCGATAACCGTCTTCGAGAGCGTCACCGATATGACGCGCCACTACGGCTATGCGACGGTTAACAAGGT
GCTTTCCATTGCCGAGGAATTGCCCGATGCCATCACGGGCGGGCAATTGCGGCTCACAAGCGGCGAACGCGTGATCCGAC
TGGAACGGCTGCGGCTGCACAAGGAAGAGCCTATCCTCTATTGTATCGACTACATCCCGCGCCGCATTATTCCGAACCGC
CTTTACGACATCGATTGGGGCGGTTCGCTGCTCGAACTGCTCGACCAGTACAGACACCGGCCGCGCATGTCCGCTGCCAC
GGTCACGGCAGTGATGCTTCCCGAGGACGTGGTGGAGCGTAACGATTTGCGCGATTTCGGGCCGGCACTGCTGATCCGCG
AAACCTGTTTCAACACCAGCGGCGCCCCCGTCGTCTACTCCGTCGACTATCACCGCGGCAGCCATTTTTCCTTCAGTCTC
GCGCGAAAGTAG

Upstream 100 bases:

>100_bases
ATGCCTAATACACTCCTACACTCCAAGTGAGGCGCGTCCCTTGACCGCTTCGAATTTGTCAGACAAGAAGAAGCACAATC
GCTTTATTTGGAGAGAGGAA

Downstream 100 bases:

>100_bases
CTGCGGGAGGGGCGGGCTCCCCGTGCTCTCTGGTCCATTCCTTTGGCGTCTCCCGAGGCTCCACTCAAACCGGACTTGCG
CGGGTCCGCCGCCTGTCCGA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 242

Protein sequence:

>243_residues
MPEPLRDTRTLVIQLRDRIADLIRDEGLVPGDKLPTEAQLTDRFKISRPALREALKLLEQDGAIYVEHGRGRFVSAISAV
HVDRPITVFESVTDMTRHYGYATVNKVLSIAEELPDAITGGQLRLTSGERVIRLERLRLHKEEPILYCIDYIPRRIIPNR
LYDIDWGGSLLELLDQYRHRPRMSAATVTAVMLPEDVVERNDLRDFGPALLIRETCFNTSGAPVVYSVDYHRGSHFSFSL
ARK

Sequences:

>Translated_243_residues
MPEPLRDTRTLVIQLRDRIADLIRDEGLVPGDKLPTEAQLTDRFKISRPALREALKLLEQDGAIYVEHGRGRFVSAISAV
HVDRPITVFESVTDMTRHYGYATVNKVLSIAEELPDAITGGQLRLTSGERVIRLERLRLHKEEPILYCIDYIPRRIIPNR
LYDIDWGGSLLELLDQYRHRPRMSAATVTAVMLPEDVVERNDLRDFGPALLIRETCFNTSGAPVVYSVDYHRGSHFSFSL
ARK
>Mature_242_residues
PEPLRDTRTLVIQLRDRIADLIRDEGLVPGDKLPTEAQLTDRFKISRPALREALKLLEQDGAIYVEHGRGRFVSAISAVH
VDRPITVFESVTDMTRHYGYATVNKVLSIAEELPDAITGGQLRLTSGERVIRLERLRLHKEEPILYCIDYIPRRIIPNRL
YDIDWGGSLLELLDQYRHRPRMSAATVTAVMLPEDVVERNDLRDFGPALLIRETCFNTSGAPVVYSVDYHRGSHFSFSLA
RK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27733; Mature: 27602

Theoretical pI: Translated: 7.22; Mature: 7.22

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEPLRDTRTLVIQLRDRIADLIRDEGLVPGDKLPTEAQLTDRFKISRPALREALKLLEQ
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHC
DGAIYVEHGRGRFVSAISAVHVDRPITVFESVTDMTRHYGYATVNKVLSIAEELPDAITG
CCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHCC
GQLRLTSGERVIRLERLRLHKEEPILYCIDYIPRRIIPNRLYDIDWGGSLLELLDQYRHR
CEEEEECCCHHHHHHHHHHCCCCCEEEEHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCC
PRMSAATVTAVMLPEDVVERNDLRDFGPALLIRETCFNTSGAPVVYSVDYHRGSHFSFSL
CCCCHHHHHEEECCHHHHHHCCCHHHCHHHHHHHHHCCCCCCCEEEEEECCCCCCEEEEE
ARK
CCC
>Mature Secondary Structure 
PEPLRDTRTLVIQLRDRIADLIRDEGLVPGDKLPTEAQLTDRFKISRPALREALKLLEQ
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHC
DGAIYVEHGRGRFVSAISAVHVDRPITVFESVTDMTRHYGYATVNKVLSIAEELPDAITG
CCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHCC
GQLRLTSGERVIRLERLRLHKEEPILYCIDYIPRRIIPNRLYDIDWGGSLLELLDQYRHR
CEEEEECCCHHHHHHHHHHCCCCCEEEEHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCC
PRMSAATVTAVMLPEDVVERNDLRDFGPALLIRETCFNTSGAPVVYSVDYHRGSHFSFSL
CCCCHHHHHEEECCHHHHHHCCCHHHCHHHHHHHHHCCCCCCCEEEEEECCCCCCEEEEE
ARK
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]