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The map label for this gene is yddU [C]

Identifier: 150398040

GI number: 150398040

Start: 2967709

End: 2969694

Strand: Direct

Name: yddU [C]

Synonym: Smed_2842

Alternate gene names: 150398040

Gene position: 2967709-2969694 (Clockwise)

Preceding gene: 150398038

Following gene: 150398042

Centisome position: 78.47

GC content: 59.21

Gene sequence:

>1986_bases
ATGTTGGCCGAGGTAATTGATATCGATCTGCAGGCGCAGCCGCCCAGACCGCAATCCGTAGAGCTGCAAACGCTCTATCG
GAGAGAGGGCGAGGTCGTGCGCCGCATGGAGACCCGACAGGGTCTCTGGGTAGCCGTGGCCGTCTATATTCTGTTTGCAG
CAACGGATATCCTGCTCGTTCCGGATGTCGCGTTCTATGCGATCCTGGCACGTGTTGCGGTGGGCGCCACGGCGATCACA
GCAATCGAAGTCCTGTTTCGGATGCATGCCCACACGAAATGGCTCGATCTCACCTGCGCCGGTGCACTCGTGGCAGGGTA
TTGGGGCTGGTTGTTCCCGTCGCTCATGACGGTCCACGCCGATAACATTGCCTATTACATGATTTTCGGCGCGATATTCA
TGATGGGCGCCAATCTATTCTTCAGTTTTCACTTTCGCCTATCGGTTGCTACGTCAGGCATCGTCCTCGCCACGTTTTTT
CTCGTTATGATCTTCTACGTTCCGAGAACCGTTTCCTATCAGGTCGCCTTCGGAACCTTCTACGTCTCGTGTTTCGTCTT
CACCTCCTATGTGAACTGGAAACTCAACCGGGAGCGATACAAGGTCTTTCTCAACGCCTTCGAGGCGAAGGTCCAGCAGA
AGGAAGCCTCGGAACGCGGAAAGGCTCTGCTCCGTCTTTCGCACACGGATTCGCTCACCGGGCTCGACAACCGCCGTGCT
GTCGACCAGAAGCTGAGGGATTATTGGAGCGACTGGCAAAGAGGCGGGAACAGCTTCGCGGCCGTCCTTATTGATGTCGA
TTTCTTCAAGAGATACAACGATTTTTACGGCCATCAGGAAGGCGATCGCTGCCTTGTTCTCGTTGCCAATGCATTGAAGG
ACTCGATCGCGCGCTACGATGCCTCGATCGGCCGCTACGGCGGCGAGGAATTCATCGTACTCGCAAGGCTGAAGACGAGA
GAGCGAGCGGCGGAACTGGCGGAAGCCATTAGACGCAGCGTCGAATACCTCGCTCTGCCGCACGAACAGCGCCGCGACGG
CATGTCGATCGTAACGGTAAGCGTCGGTGCAGGCTTCACCCGCAACCAGATCGGTTCAAAGCTCGAGAGGCTGATCCATG
AAGCGGACCGCGCGCTCTACGGGGCGAAGGCAAACGGCCGCAACTGCGCGCGCCTCTTCGACCCGAACGACCCGCAGACC
AGCGACGAAAGCGAAAACATCGCCGCGCTCCTGAAAATCGCTATCGACCAGGATCTCGTCTCACTCGTCTATCAGCCCAT
ACGAGACCTCTCCACCGGCCGGGTGGACGCTGTCGAGGCGCTGATGCGGTTGAAGATGCTGGACGGCACGTCCGTCCCCC
CCAGCCTCTTCATCCCGATAGCCGAGAGAACCGGGGCGATCCTCGACCTCGGCCGCTGGGTCATACGCGTGGTGTGCCTG
GAACTCCTGACAAGCGAGCATGTGCCCGTCGTCAGCGTGAATGTCTCGCCGATCCAACTCCGATCGCCGGGCTTCGCGGC
TTCGGTCGCGTCCATTCTCGGTGAAACTGGGGTGGCCGGGAGCAGGCTCGCCTTCGAAATCACGGAGGGCCTCGAGATGG
AGATGCATTCCGATATACTGCGCTGCATCAGCGACTTGAAGACGCTGGGCATCAGGATATGGCTTGACGACTTCGGTACC
GGTTTCGCGGGTCTGTCTTGGCTGCGCCTGATCGATTTCGACACGGTCAAGATCGACCGATCCTTCCTTCACGATTGCGA
CACACCCAAGGGCAAGGCCATGCTCAGGGACATTATCGGCCTGGTGCGAAACCGCGGACACAAGATCCTCGTGGAAGGTG
TGGAGACGGAGGAGCAGCTCACGCTCATGCGGCAATTCCGGATCGATCACGTCCAGGGCTTCCATGTCGGGCGCCCGGCG
CCTGCCCGAAGCTTCGAACCTCCTCCACCATCGGACAGGCGGCGGACCCGCGCAAGTCCGGTTTGA

Upstream 100 bases:

>100_bases
AATGGATGGGGCATGAAACACCTGAGACGCGTTGCTCCGGCAAGGAGCTTTAGCCTCGCGGAAGGCGGCAAAAAAAGATT
TGGATCGGTGCGTGAGGCAC

Downstream 100 bases:

>100_bases
GTGGAGCCTCGGGAGACGCCAAAGGAATGGACCAGAGAGCACGGGGAGCCCGCCCCTCCCGCAGCTACTTTCGCGCGAGA
CTGAAGGAAAAATGGCTGCC

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 661; Mature: 661

Protein sequence:

>661_residues
MLAEVIDIDLQAQPPRPQSVELQTLYRREGEVVRRMETRQGLWVAVAVYILFAATDILLVPDVAFYAILARVAVGATAIT
AIEVLFRMHAHTKWLDLTCAGALVAGYWGWLFPSLMTVHADNIAYYMIFGAIFMMGANLFFSFHFRLSVATSGIVLATFF
LVMIFYVPRTVSYQVAFGTFYVSCFVFTSYVNWKLNRERYKVFLNAFEAKVQQKEASERGKALLRLSHTDSLTGLDNRRA
VDQKLRDYWSDWQRGGNSFAAVLIDVDFFKRYNDFYGHQEGDRCLVLVANALKDSIARYDASIGRYGGEEFIVLARLKTR
ERAAELAEAIRRSVEYLALPHEQRRDGMSIVTVSVGAGFTRNQIGSKLERLIHEADRALYGAKANGRNCARLFDPNDPQT
SDESENIAALLKIAIDQDLVSLVYQPIRDLSTGRVDAVEALMRLKMLDGTSVPPSLFIPIAERTGAILDLGRWVIRVVCL
ELLTSEHVPVVSVNVSPIQLRSPGFAASVASILGETGVAGSRLAFEITEGLEMEMHSDILRCISDLKTLGIRIWLDDFGT
GFAGLSWLRLIDFDTVKIDRSFLHDCDTPKGKAMLRDIIGLVRNRGHKILVEGVETEEQLTLMRQFRIDHVQGFHVGRPA
PARSFEPPPPSDRRRTRASPV

Sequences:

>Translated_661_residues
MLAEVIDIDLQAQPPRPQSVELQTLYRREGEVVRRMETRQGLWVAVAVYILFAATDILLVPDVAFYAILARVAVGATAIT
AIEVLFRMHAHTKWLDLTCAGALVAGYWGWLFPSLMTVHADNIAYYMIFGAIFMMGANLFFSFHFRLSVATSGIVLATFF
LVMIFYVPRTVSYQVAFGTFYVSCFVFTSYVNWKLNRERYKVFLNAFEAKVQQKEASERGKALLRLSHTDSLTGLDNRRA
VDQKLRDYWSDWQRGGNSFAAVLIDVDFFKRYNDFYGHQEGDRCLVLVANALKDSIARYDASIGRYGGEEFIVLARLKTR
ERAAELAEAIRRSVEYLALPHEQRRDGMSIVTVSVGAGFTRNQIGSKLERLIHEADRALYGAKANGRNCARLFDPNDPQT
SDESENIAALLKIAIDQDLVSLVYQPIRDLSTGRVDAVEALMRLKMLDGTSVPPSLFIPIAERTGAILDLGRWVIRVVCL
ELLTSEHVPVVSVNVSPIQLRSPGFAASVASILGETGVAGSRLAFEITEGLEMEMHSDILRCISDLKTLGIRIWLDDFGT
GFAGLSWLRLIDFDTVKIDRSFLHDCDTPKGKAMLRDIIGLVRNRGHKILVEGVETEEQLTLMRQFRIDHVQGFHVGRPA
PARSFEPPPPSDRRRTRASPV
>Mature_661_residues
MLAEVIDIDLQAQPPRPQSVELQTLYRREGEVVRRMETRQGLWVAVAVYILFAATDILLVPDVAFYAILARVAVGATAIT
AIEVLFRMHAHTKWLDLTCAGALVAGYWGWLFPSLMTVHADNIAYYMIFGAIFMMGANLFFSFHFRLSVATSGIVLATFF
LVMIFYVPRTVSYQVAFGTFYVSCFVFTSYVNWKLNRERYKVFLNAFEAKVQQKEASERGKALLRLSHTDSLTGLDNRRA
VDQKLRDYWSDWQRGGNSFAAVLIDVDFFKRYNDFYGHQEGDRCLVLVANALKDSIARYDASIGRYGGEEFIVLARLKTR
ERAAELAEAIRRSVEYLALPHEQRRDGMSIVTVSVGAGFTRNQIGSKLERLIHEADRALYGAKANGRNCARLFDPNDPQT
SDESENIAALLKIAIDQDLVSLVYQPIRDLSTGRVDAVEALMRLKMLDGTSVPPSLFIPIAERTGAILDLGRWVIRVVCL
ELLTSEHVPVVSVNVSPIQLRSPGFAASVASILGETGVAGSRLAFEITEGLEMEMHSDILRCISDLKTLGIRIWLDDFGT
GFAGLSWLRLIDFDTVKIDRSFLHDCDTPKGKAMLRDIIGLVRNRGHKILVEGVETEEQLTLMRQFRIDHVQGFHVGRPA
PARSFEPPPPSDRRRTRASPV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=436, Percent_Identity=30.9633027522936, Blast_Score=194, Evalue=1e-50,
Organism=Escherichia coli, GI1787541, Length=441, Percent_Identity=32.6530612244898, Blast_Score=181, Evalue=1e-46,
Organism=Escherichia coli, GI226510982, Length=284, Percent_Identity=27.8169014084507, Blast_Score=116, Evalue=4e-27,
Organism=Escherichia coli, GI1790496, Length=239, Percent_Identity=30.1255230125523, Blast_Score=113, Evalue=3e-26,
Organism=Escherichia coli, GI1787055, Length=254, Percent_Identity=31.1023622047244, Blast_Score=112, Evalue=9e-26,
Organism=Escherichia coli, GI87082096, Length=427, Percent_Identity=26.2295081967213, Blast_Score=110, Evalue=3e-25,
Organism=Escherichia coli, GI87081845, Length=243, Percent_Identity=29.6296296296296, Blast_Score=108, Evalue=9e-25,
Organism=Escherichia coli, GI87081743, Length=238, Percent_Identity=31.0924369747899, Blast_Score=107, Evalue=3e-24,
Organism=Escherichia coli, GI1788502, Length=237, Percent_Identity=28.6919831223629, Blast_Score=102, Evalue=1e-22,
Organism=Escherichia coli, GI1786507, Length=268, Percent_Identity=27.9850746268657, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI1788849, Length=237, Percent_Identity=27.4261603375527, Blast_Score=93, Evalue=7e-20,
Organism=Escherichia coli, GI87081980, Length=254, Percent_Identity=27.9527559055118, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI87081881, Length=188, Percent_Identity=33.5106382978723, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI1787262, Length=173, Percent_Identity=36.9942196531792, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1786584, Length=258, Percent_Identity=28.2945736434109, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI145693134, Length=164, Percent_Identity=35.9756097560976, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI87082007, Length=162, Percent_Identity=36.4197530864198, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1787816, Length=171, Percent_Identity=32.1637426900585, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI87081977, Length=226, Percent_Identity=29.646017699115, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI87081974, Length=161, Percent_Identity=32.2981366459627, Blast_Score=76, Evalue=7e-15,
Organism=Escherichia coli, GI1787802, Length=162, Percent_Identity=31.4814814814815, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI1788085, Length=168, Percent_Identity=32.7380952380952, Blast_Score=70, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 74214; Mature: 74214

Theoretical pI: Translated: 7.62; Mature: 7.62

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAEVIDIDLQAQPPRPQSVELQTLYRREGEVVRRMETRQGLWVAVAVYILFAATDILLV
CCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
PDVAFYAILARVAVGATAITAIEVLFRMHAHTKWLDLTCAGALVAGYWGWLFPSLMTVHA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHC
DNIAYYMIFGAIFMMGANLFFSFHFRLSVATSGIVLATFFLVMIFYVPRTVSYQVAFGTF
CCHHHHHHHHHHHHHCCHHHEEEEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEHHHHH
YVSCFVFTSYVNWKLNRERYKVFLNAFEAKVQQKEASERGKALLRLSHTDSLTGLDNRRA
HHHHHHHHHHHCCEECHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCHHH
VDQKLRDYWSDWQRGGNSFAAVLIDVDFFKRYNDFYGHQEGDRCLVLVANALKDSIARYD
HHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHH
ASIGRYGGEEFIVLARLKTRERAAELAEAIRRSVEYLALPHEQRRDGMSIVTVSVGAGFT
HHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCEEEEEECCCCCH
RNQIGSKLERLIHEADRALYGAKANGRNCARLFDPNDPQTSDESENIAALLKIAIDQDLV
HHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
SLVYQPIRDLSTGRVDAVEALMRLKMLDGTSVPPSLFIPIAERTGAILDLGRWVIRVVCL
HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEHHHCCHHHHHHHHHHHHHHH
ELLTSEHVPVVSVNVSPIQLRSPGFAASVASILGETGVAGSRLAFEITEGLEMEMHSDIL
HHHCCCCCCEEEECCCCEEECCCCHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHH
RCISDLKTLGIRIWLDDFGTGFAGLSWLRLIDFDTVKIDRSFLHDCDTPKGKAMLRDIIG
HHHHHHHHCEEEEEEECCCCCHHHHHHHHHHCCCCEEHHHHHHHCCCCCCHHHHHHHHHH
LVRNRGHKILVEGVETEEQLTLMRQFRIDHVQGFHVGRPAPARSFEPPPPSDRRRTRASP
HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
V
C
>Mature Secondary Structure
MLAEVIDIDLQAQPPRPQSVELQTLYRREGEVVRRMETRQGLWVAVAVYILFAATDILLV
CCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
PDVAFYAILARVAVGATAITAIEVLFRMHAHTKWLDLTCAGALVAGYWGWLFPSLMTVHA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHC
DNIAYYMIFGAIFMMGANLFFSFHFRLSVATSGIVLATFFLVMIFYVPRTVSYQVAFGTF
CCHHHHHHHHHHHHHCCHHHEEEEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEHHHHH
YVSCFVFTSYVNWKLNRERYKVFLNAFEAKVQQKEASERGKALLRLSHTDSLTGLDNRRA
HHHHHHHHHHHCCEECHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCHHH
VDQKLRDYWSDWQRGGNSFAAVLIDVDFFKRYNDFYGHQEGDRCLVLVANALKDSIARYD
HHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHH
ASIGRYGGEEFIVLARLKTRERAAELAEAIRRSVEYLALPHEQRRDGMSIVTVSVGAGFT
HHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCEEEEEECCCCCH
RNQIGSKLERLIHEADRALYGAKANGRNCARLFDPNDPQTSDESENIAALLKIAIDQDLV
HHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
SLVYQPIRDLSTGRVDAVEALMRLKMLDGTSVPPSLFIPIAERTGAILDLGRWVIRVVCL
HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEHHHCCHHHHHHHHHHHHHHH
ELLTSEHVPVVSVNVSPIQLRSPGFAASVASILGETGVAGSRLAFEITEGLEMEMHSDIL
HHHCCCCCCEEEECCCCEEECCCCHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHH
RCISDLKTLGIRIWLDDFGTGFAGLSWLRLIDFDTVKIDRSFLHDCDTPKGKAMLRDIIG
HHHHHHHHCEEEEEEECCCCCHHHHHHHHHHCCCCEEHHHHHHHCCCCCCHHHHHHHHHH
LVRNRGHKILVEGVETEEQLTLMRQFRIDHVQGFHVGRPAPARSFEPPPPSDRRRTRASP
HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
V
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]