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The map label for this gene is 150397952

Identifier: 150397952

GI number: 150397952

Start: 2873062

End: 2873949

Strand: Direct

Name: 150397952

Synonym: Smed_2754

Alternate gene names: NA

Gene position: 2873062-2873949 (Clockwise)

Preceding gene: 150397951

Following gene: 150397953

Centisome position: 75.97

GC content: 62.73

Gene sequence:

>888_bases
TTGACACTTGCTGCCATGACTGCGGACGTCTCCGGCCTTGCCACCGAGGAGGCGAACCGCCGCCGCCAGCGCAAGCCGAA
GCTTGCCGCCTTTTTCGTACTCGGCTCGGCCCTGCTCGTTGCAGGTTGCCAGACCGACAAGCCCGAATCGATGTTTCGCG
TCGAACGCGCGCAAGGCTCGGAAGGCAACATCGCCTCGCTCTCGAGCGTCATCGCCTCTAACCCCGGCGATCCCGAGGGC
TACAACGTGCGCGGCTCGGCCTACGGGCGCGCTGGCGAGTTCCGCCGCGCGGTCGCCGATTTCGATCAGGCGATCCAGCT
CAATCCACGCTTCTATCAGGCCTATGCCAACAGGGCTCTGGTCCAGCGAAACCTGGGCAACCAGCAGGCTGCACTCGCGG
ATTACAACGCGGCGCTGCAGATAAATCCGAACTACGACGTCGCCTATATCGGCCGTGGGAATCTGTACCGCCAGGCCAAC
CAGCTCGACGCCGCCTTCAACGATTTCAACAAGGCGATCGAACTCGACACGGCCGACCCCCGCGCCTATCACAATCGCGG
CCTGATCTATCAGGCACGGAATCAGCACGTGCAGGCGATCGAGGATTTCTCCAAGGCGATTTCGCTCTCGCCGAGTTCCC
CCGAGCCCTATAACGGCCGCGGCATATCCTATGTAGCGCAGGGCGATGACGACAACGCCTTCTCCGACTTCAATACGGCC
ATCAACCTCAACGGCAAGCTGGCCGAATCATGGGCAAACCAGGCGCTGGTCTACGAACGGCGCGGCGATAAGGCCAAGGC
GGCGAAGTCCTATTCGCACGCCTTGTCGCTGGATCCCAAATACGAGCCGGCTCGTGCCGGCCTTGCCCGCGCCAAGGCGA
TGTCCTGA

Upstream 100 bases:

>100_bases
GCGTGGATTATCAGCTGGCAACGGCCCAGCATCGCGCGCGAATGCTCGCAAACGGAAAGCCGCTGGCTTTCGTTGACCTT
GTCGCATTGAGGGATCGACT

Downstream 100 bases:

>100_bases
GGACAGCTTGAATTGTTCGACTTCAGACGCCCGCGACCATGTCGCGGGCGTCGTCGTATCATCTGCGCGGATCCGGGTTG
CGGAACTATCCGGAGTTCAA

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 294

Protein sequence:

>295_residues
MTLAAMTADVSGLATEEANRRRQRKPKLAAFFVLGSALLVAGCQTDKPESMFRVERAQGSEGNIASLSSVIASNPGDPEG
YNVRGSAYGRAGEFRRAVADFDQAIQLNPRFYQAYANRALVQRNLGNQQAALADYNAALQINPNYDVAYIGRGNLYRQAN
QLDAAFNDFNKAIELDTADPRAYHNRGLIYQARNQHVQAIEDFSKAISLSPSSPEPYNGRGISYVAQGDDDNAFSDFNTA
INLNGKLAESWANQALVYERRGDKAKAAKSYSHALSLDPKYEPARAGLARAKAMS

Sequences:

>Translated_295_residues
MTLAAMTADVSGLATEEANRRRQRKPKLAAFFVLGSALLVAGCQTDKPESMFRVERAQGSEGNIASLSSVIASNPGDPEG
YNVRGSAYGRAGEFRRAVADFDQAIQLNPRFYQAYANRALVQRNLGNQQAALADYNAALQINPNYDVAYIGRGNLYRQAN
QLDAAFNDFNKAIELDTADPRAYHNRGLIYQARNQHVQAIEDFSKAISLSPSSPEPYNGRGISYVAQGDDDNAFSDFNTA
INLNGKLAESWANQALVYERRGDKAKAAKSYSHALSLDPKYEPARAGLARAKAMS
>Mature_294_residues
TLAAMTADVSGLATEEANRRRQRKPKLAAFFVLGSALLVAGCQTDKPESMFRVERAQGSEGNIASLSSVIASNPGDPEGY
NVRGSAYGRAGEFRRAVADFDQAIQLNPRFYQAYANRALVQRNLGNQQAALADYNAALQINPNYDVAYIGRGNLYRQANQ
LDAAFNDFNKAIELDTADPRAYHNRGLIYQARNQHVQAIEDFSKAISLSPSSPEPYNGRGISYVAQGDDDNAFSDFNTAI
NLNGKLAESWANQALVYERRGDKAKAAKSYSHALSLDPKYEPARAGLARAKAMS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 4 TPR repeats [H]

Homologues:

Organism=Homo sapiens, GI32307148, Length=221, Percent_Identity=29.4117647058824, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI32307150, Length=221, Percent_Identity=29.4117647058824, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI310131789, Length=201, Percent_Identity=30.3482587064677, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI310123097, Length=201, Percent_Identity=30.3482587064677, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI310110582, Length=201, Percent_Identity=30.3482587064677, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI170784867, Length=221, Percent_Identity=25.7918552036199, Blast_Score=75, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI115532692, Length=213, Percent_Identity=30.9859154929577, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI115532690, Length=213, Percent_Identity=30.9859154929577, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI17647755, Length=221, Percent_Identity=28.9592760180996, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24585827, Length=221, Percent_Identity=28.9592760180996, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24585829, Length=221, Percent_Identity=28.9592760180996, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24647123, Length=190, Percent_Identity=26.8421052631579, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24583797, Length=219, Percent_Identity=25.5707762557078, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24583795, Length=219, Percent_Identity=25.5707762557078, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24583793, Length=219, Percent_Identity=25.5707762557078, Blast_Score=69, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001440
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF00515 TPR_1 [H]

EC number: NA

Molecular weight: Translated: 32198; Mature: 32067

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLAAMTADVSGLATEEANRRRQRKPKLAAFFVLGSALLVAGCQTDKPESMFRVERAQGS
CCEEEEECCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHCCC
EGNIASLSSVIASNPGDPEGYNVRGSAYGRAGEFRRAVADFDQAIQLNPRFYQAYANRAL
CCCHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHEECCHHHHHHHHHHHH
VQRNLGNQQAALADYNAALQINPNYDVAYIGRGNLYRQANQLDAAFNDFNKAIELDTADP
HHHCCCCCHHEEECCCEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHEEEECCCCC
RAYHNRGLIYQARNQHVQAIEDFSKAISLSPSSPEPYNGRGISYVAQGDDDNAFSDFNTA
HHHHCCCCEEECCCHHHHHHHHHHHHEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCE
INLNGKLAESWANQALVYERRGDKAKAAKSYSHALSLDPKYEPARAGLARAKAMS
EECCCHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
TLAAMTADVSGLATEEANRRRQRKPKLAAFFVLGSALLVAGCQTDKPESMFRVERAQGS
CEEEEECCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHCCC
EGNIASLSSVIASNPGDPEGYNVRGSAYGRAGEFRRAVADFDQAIQLNPRFYQAYANRAL
CCCHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHEECCHHHHHHHHHHHH
VQRNLGNQQAALADYNAALQINPNYDVAYIGRGNLYRQANQLDAAFNDFNKAIELDTADP
HHHCCCCCHHEEECCCEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHEEEECCCCC
RAYHNRGLIYQARNQHVQAIEDFSKAISLSPSSPEPYNGRGISYVAQGDDDNAFSDFNTA
HHHHCCCCEEECCCHHHHHHHHHHHHEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCE
INLNGKLAESWANQALVYERRGDKAKAAKSYSHALSLDPKYEPARAGLARAKAMS
EECCCHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1368342; 8905231 [H]