| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is glgP [H]
Identifier: 150397937
GI number: 150397937
Start: 2852081
End: 2854546
Strand: Direct
Name: glgP [H]
Synonym: Smed_2739
Alternate gene names: 150397937
Gene position: 2852081-2854546 (Clockwise)
Preceding gene: 150397936
Following gene: 150397938
Centisome position: 75.41
GC content: 61.23
Gene sequence:
>2466_bases ATGATGAATCGGCTCTCCAACACCGAACTGCCGCAACCCGCCCCCAGATCCTCGGAACCCAGCCAGCTTGCAGTCGAAAT CCTCGAGCGCCTGAAGTATCGCATCGGCAAGGATCCGAAAGTCGCCAAGCCGCATGACTGGCTGACGGCCGCCATTCTCG TCGCACGTGACCGCATCACCGACAAATGGATGGATTCCACCCGCAAGACCTACTCGACCGGTGCAAAGCGCGTCTATTAC ATGTCGCTCGAGTTCCTCATCGGCCGCATGATGCGCGATGCGATGACGAATCTGGGGCTTATGGACGAAATGCGGGACGC CCTCGCTTCGCTTGGTGTGGATATCGACGTGATCGCCGCGCTCGAGCCGGACGCGGCACTCGGCAATGGCGGTCTCGGCC GCCTCGCCGCCTGCTTCATGGAATCGATGGCGACCGTCGACGTGCCTGCCTATGGCTATGGCATCCGCTACATGCACGGT CTCTTTCGCCAGCAGATGGCCGACGGTTGGCAGGTGGAACTGCCGGAAACGTGGCTGGCCCATGGCAACCCCTGGGAATT CGAACGCCGCGAATGCTCCTACGAGATCGGCTATGGCGGCAGCGTGGAAACGGTCAACATCGACGAGGAAGTGCAGCGCT ACGTTTGGAAGCCGGCTGAGCGCGTCATCGCCACCGCCTTCGATACGCCCGCCGTCGGCTGGCGGGCGACGCGTGTTAAC ACGCTCCGCCTCTGGGCCGCGCAGCCGATCGACCCGATCCTGCTGGACGCCTTCAATGCGGGCGACCATATCGGGGCTCT GCGCGAAAGCAACAAGGCCGAAAGCCTGACGCGCGTGCTCTATCCGGCCGACGCCACGCCGGCCGGCCAGGAACTCAGGC TCCGACAGGAATATTTCTTTTCCTCCGCCTCGCTTCAGGACATCCTGCGCCGGCACCTGCAGCAATATCCGGATTTCACG TCGCTTCCCGATGCCGTTGCCATTCAGCTCAACGACACGCATCCAGCCGTCTCCGTGGCCGAACTCGTACGTCTTTTGAG CGACGTCCACGGATTGGATTTCGAGCAGTCCTGGGACATCGCACGACGGACCTTCTCCTATACCAACCACACCCTGCTGC CTGAAGCGCTCGAGAGCTGGCCGGTTCCGCTCTTCGAGAGGCTGCTGCCTCGCCACATGCAGATCGTCTACGCCATCAAC GCCAAGATTTTGATCGAAGCGCGCAGGGTGAGGTACGCGACGGACGAGGCGATCCGCAACATCTCGCTCATCGACGAGAC GGGCGAGCGGCGCGTCCGCATGGGCAATCTGGCCTTTGTCGGCTCGCACTCGATCAACGGCGTATCGGCTCTGCATACCG AGCTGATGAAGGAAACTGTCTTCGCCGATCTGCATGCGCTCTATCCGGACCGCATCAACAACAAGACCAACGGCATCACG CCGCGACGTTGGCTCATGCAGTGCAATCCGGATCTGTTCGGTCTGATCCGCGAGGCGATCGGCGACGAATTCATAGACAA TACCGAGGCGCTTCAGGCGCTCGACGCCTTTGCCGATAACGCGGATTTCCAGGAGCGTTTCGCAGCCGTCAAACGCGCCA ACAAAGTGCGGCTTGCGAAGCTGATCCAGGCCAATCTCGGCATCCGGCTCGATCCCTCGGCGATGTTCGACATCCAGATC AAGCGCATCCACGAATACAAGCGGCAGCTGCTGAACCTTATCGAAGCCGTGGCGCTTTACGATCAGATCCGCTCACACCC CGAGCTCGACTGGGTGCCGCGCGTCAAGCTCTTCGCCGGAAAAGCGGCGCCAAGCTACCACAACGCCAAGCTGATCATAA AACTTGCCAATGACATCGCCCGCGTCATCAACAACGATCCGGCGGTCCGCGGGCTCCTGAAAGTCGTCTTCATCCCGAAC TACAACGTTTCGCTTGCGGAGGTGATGGTCCCGGCGGCCGACCTTTCGGAGCAGATATCGACGGCCGGCATGGAAGCGTC GGGCACCGGAAACATGAAGTTCGCCCTGAACGGAGCGCTGACCATCGGCACGCTCGACGGGGCTAATGTCGAGATGCGAG ACTGGGTCGGAGAGGAGAACATCCAGATCTTCGGCATGACTGCCGAGGACGTGGGCAAGGCGCGGGCCGAAGGGCACAAT CCGCGCGCCATCATCGAAAATTCGCGTGAACTCTCGCAAGCGCTCTCGGCGATCGCGTCAGGCGTCTTCTCCCCCGATGA TCGAAATCGCTTCTCGGGCCTCGTCGACGGACTCTATAACCACGACTGGTTCATGGTTGCGGCCGATTTCGAAGCCTACG CCAAGGCGCAGCGCGAAATCGACCAGCTCTGGACCAAGCCAGCCGCCTGGTATTCGAAGGCGGTCCGCAATACCGCCCGG ATGGGCTGGTTCTCATCCGATCGAACGATCCGGCAATATGCCGGAGAGATCTGGAGAGCCGGATGA
Upstream 100 bases:
>100_bases AACACCTGTTGCAAGCGCTTCGGATCGATGCATAAATTGCCTTGACCTGGTCGGTTCCGACCCGGGGCTTCCGAAATGCA ATAAGGGTATGACAGTTCTC
Downstream 100 bases:
>100_bases CGGTTCCCCCCGGCCAGGATCCAGCTCCCGCCCCGTCAGGCACGCTGCCAGCGCCGGAAATTGCGGCAATACTTTCCGGC ACCCATAGCGACCCCTTTGC
Product: glycogen/starch/alpha-glucan phosphorylase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 821; Mature: 821
Protein sequence:
>821_residues MMNRLSNTELPQPAPRSSEPSQLAVEILERLKYRIGKDPKVAKPHDWLTAAILVARDRITDKWMDSTRKTYSTGAKRVYY MSLEFLIGRMMRDAMTNLGLMDEMRDALASLGVDIDVIAALEPDAALGNGGLGRLAACFMESMATVDVPAYGYGIRYMHG LFRQQMADGWQVELPETWLAHGNPWEFERRECSYEIGYGGSVETVNIDEEVQRYVWKPAERVIATAFDTPAVGWRATRVN TLRLWAAQPIDPILLDAFNAGDHIGALRESNKAESLTRVLYPADATPAGQELRLRQEYFFSSASLQDILRRHLQQYPDFT SLPDAVAIQLNDTHPAVSVAELVRLLSDVHGLDFEQSWDIARRTFSYTNHTLLPEALESWPVPLFERLLPRHMQIVYAIN AKILIEARRVRYATDEAIRNISLIDETGERRVRMGNLAFVGSHSINGVSALHTELMKETVFADLHALYPDRINNKTNGIT PRRWLMQCNPDLFGLIREAIGDEFIDNTEALQALDAFADNADFQERFAAVKRANKVRLAKLIQANLGIRLDPSAMFDIQI KRIHEYKRQLLNLIEAVALYDQIRSHPELDWVPRVKLFAGKAAPSYHNAKLIIKLANDIARVINNDPAVRGLLKVVFIPN YNVSLAEVMVPAADLSEQISTAGMEASGTGNMKFALNGALTIGTLDGANVEMRDWVGEENIQIFGMTAEDVGKARAEGHN PRAIIENSRELSQALSAIASGVFSPDDRNRFSGLVDGLYNHDWFMVAADFEAYAKAQREIDQLWTKPAAWYSKAVRNTAR MGWFSSDRTIRQYAGEIWRAG
Sequences:
>Translated_821_residues MMNRLSNTELPQPAPRSSEPSQLAVEILERLKYRIGKDPKVAKPHDWLTAAILVARDRITDKWMDSTRKTYSTGAKRVYY MSLEFLIGRMMRDAMTNLGLMDEMRDALASLGVDIDVIAALEPDAALGNGGLGRLAACFMESMATVDVPAYGYGIRYMHG LFRQQMADGWQVELPETWLAHGNPWEFERRECSYEIGYGGSVETVNIDEEVQRYVWKPAERVIATAFDTPAVGWRATRVN TLRLWAAQPIDPILLDAFNAGDHIGALRESNKAESLTRVLYPADATPAGQELRLRQEYFFSSASLQDILRRHLQQYPDFT SLPDAVAIQLNDTHPAVSVAELVRLLSDVHGLDFEQSWDIARRTFSYTNHTLLPEALESWPVPLFERLLPRHMQIVYAIN AKILIEARRVRYATDEAIRNISLIDETGERRVRMGNLAFVGSHSINGVSALHTELMKETVFADLHALYPDRINNKTNGIT PRRWLMQCNPDLFGLIREAIGDEFIDNTEALQALDAFADNADFQERFAAVKRANKVRLAKLIQANLGIRLDPSAMFDIQI KRIHEYKRQLLNLIEAVALYDQIRSHPELDWVPRVKLFAGKAAPSYHNAKLIIKLANDIARVINNDPAVRGLLKVVFIPN YNVSLAEVMVPAADLSEQISTAGMEASGTGNMKFALNGALTIGTLDGANVEMRDWVGEENIQIFGMTAEDVGKARAEGHN PRAIIENSRELSQALSAIASGVFSPDDRNRFSGLVDGLYNHDWFMVAADFEAYAKAQREIDQLWTKPAAWYSKAVRNTAR MGWFSSDRTIRQYAGEIWRAG >Mature_821_residues MMNRLSNTELPQPAPRSSEPSQLAVEILERLKYRIGKDPKVAKPHDWLTAAILVARDRITDKWMDSTRKTYSTGAKRVYY MSLEFLIGRMMRDAMTNLGLMDEMRDALASLGVDIDVIAALEPDAALGNGGLGRLAACFMESMATVDVPAYGYGIRYMHG LFRQQMADGWQVELPETWLAHGNPWEFERRECSYEIGYGGSVETVNIDEEVQRYVWKPAERVIATAFDTPAVGWRATRVN TLRLWAAQPIDPILLDAFNAGDHIGALRESNKAESLTRVLYPADATPAGQELRLRQEYFFSSASLQDILRRHLQQYPDFT SLPDAVAIQLNDTHPAVSVAELVRLLSDVHGLDFEQSWDIARRTFSYTNHTLLPEALESWPVPLFERLLPRHMQIVYAIN AKILIEARRVRYATDEAIRNISLIDETGERRVRMGNLAFVGSHSINGVSALHTELMKETVFADLHALYPDRINNKTNGIT PRRWLMQCNPDLFGLIREAIGDEFIDNTEALQALDAFADNADFQERFAAVKRANKVRLAKLIQANLGIRLDPSAMFDIQI KRIHEYKRQLLNLIEAVALYDQIRSHPELDWVPRVKLFAGKAAPSYHNAKLIIKLANDIARVINNDPAVRGLLKVVFIPN YNVSLAEVMVPAADLSEQISTAGMEASGTGNMKFALNGALTIGTLDGANVEMRDWVGEENIQIFGMTAEDVGKARAEGHN PRAIIENSRELSQALSAIASGVFSPDDRNRFSGLVDGLYNHDWFMVAADFEAYAKAQREIDQLWTKPAAWYSKAVRNTAR MGWFSSDRTIRQYAGEIWRAG
Specific function: Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties [
COG id: COG0058
COG function: function code G; Glucan phosphorylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycogen phosphorylase family [H]
Homologues:
Organism=Homo sapiens, GI21361370, Length=796, Percent_Identity=47.7386934673367, Blast_Score=744, Evalue=0.0, Organism=Homo sapiens, GI71037379, Length=796, Percent_Identity=47.1105527638191, Blast_Score=741, Evalue=0.0, Organism=Homo sapiens, GI5032009, Length=806, Percent_Identity=46.6501240694789, Blast_Score=739, Evalue=0.0, Organism=Homo sapiens, GI255653002, Length=763, Percent_Identity=46.7889908256881, Blast_Score=690, Evalue=0.0, Organism=Homo sapiens, GI257900462, Length=663, Percent_Identity=47.3604826546003, Blast_Score=638, Evalue=0.0, Organism=Escherichia coli, GI2367228, Length=813, Percent_Identity=47.7244772447724, Blast_Score=774, Evalue=0.0, Organism=Escherichia coli, GI48994936, Length=747, Percent_Identity=46.4524765729585, Blast_Score=678, Evalue=0.0, Organism=Caenorhabditis elegans, GI32566204, Length=800, Percent_Identity=47.375, Blast_Score=744, Evalue=0.0, Organism=Caenorhabditis elegans, GI17564550, Length=800, Percent_Identity=47.375, Blast_Score=744, Evalue=0.0, Organism=Saccharomyces cerevisiae, GI6325418, Length=807, Percent_Identity=44.361833952912, Blast_Score=650, Evalue=0.0, Organism=Drosophila melanogaster, GI78706832, Length=799, Percent_Identity=47.3091364205257, Blast_Score=736, Evalue=0.0, Organism=Drosophila melanogaster, GI24581010, Length=799, Percent_Identity=47.3091364205257, Blast_Score=736, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011833 - InterPro: IPR000811 [H]
Pfam domain/function: PF00343 Phosphorylase [H]
EC number: =2.4.1.1 [H]
Molecular weight: Translated: 92354; Mature: 92354
Theoretical pI: Translated: 6.00; Mature: 6.00
Prosite motif: PS00102 PHOSPHORYLASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMNRLSNTELPQPAPRSSEPSQLAVEILERLKYRIGKDPKVAKPHDWLTAAILVARDRIT CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH DKWMDSTRKTYSTGAKRVYYMSLEFLIGRMMRDAMTNLGLMDEMRDALASLGVDIDVIAA HHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEE LEPDAALGNGGLGRLAACFMESMATVDVPAYGYGIRYMHGLFRQQMADGWQVELPETWLA ECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEECCHHHHC HGNPWEFERRECSYEIGYGGSVETVNIDEEVQRYVWKPAERVIATAFDTPAVGWRATRVN CCCCCCCCCCCCCEEECCCCCEEEECCHHHHHHHHHCCHHHHHHHHCCCCCCCEEEEEEE TLRLWAAQPIDPILLDAFNAGDHIGALRESNKAESLTRVLYPADATPAGQELRLRQEYFF EEEEEECCCCCHHHHCCCCCCCHHHHHHHCCHHHHHHHHEECCCCCCCCHHHHHHHHHHH SSASLQDILRRHLQQYPDFTSLPDAVAIQLNDTHPAVSVAELVRLLSDVHGLDFEQSWDI CCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHH ARRTFSYTNHTLLPEALESWPVPLFERLLPRHMQIVYAINAKILIEARRVRYATDEAIRN HHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHHEEEEEECCEEEEEHHHHHHHHHHHHHH ISLIDETGERRVRMGNLAFVGSHSINGVSALHTELMKETVFADLHALYPDRINNKTNGIT HHHHCCCCCCCEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCC PRRWLMQCNPDLFGLIREAIGDEFIDNTEALQALDAFADNADFQERFAAVKRANKVRLAK HHHHHHHCCCHHHHHHHHHHCHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH LIQANLGIRLDPSAMFDIQIKRIHEYKRQLLNLIEAVALYDQIRSHPELDWVPRVKLFAG HHHHCCCCEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEC KAAPSYHNAKLIIKLANDIARVINNDPAVRGLLKVVFIPNYNVSLAEVMVPAADLSEQIS CCCCCCCCCEEEEHHHHHHHHHHCCCHHHHHHHHEEEECCCCCCHHHHHCCHHHHHHHHH TAGMEASGTGNMKFALNGALTIGTLDGANVEMRDWVGEENIQIFGMTAEDVGKARAEGHN HCCCCCCCCCCEEEEEECEEEEEECCCCCEEHHHCCCCCCEEEEEECHHHHHHHHHCCCC PRAIIENSRELSQALSAIASGVFSPDDRNRFSGLVDGLYNHDWFMVAADFEAYAKAQREI CHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHH DQLWTKPAAWYSKAVRNTARMGWFSSDRTIRQYAGEIWRAG HHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCC >Mature Secondary Structure MMNRLSNTELPQPAPRSSEPSQLAVEILERLKYRIGKDPKVAKPHDWLTAAILVARDRIT CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH DKWMDSTRKTYSTGAKRVYYMSLEFLIGRMMRDAMTNLGLMDEMRDALASLGVDIDVIAA HHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEE LEPDAALGNGGLGRLAACFMESMATVDVPAYGYGIRYMHGLFRQQMADGWQVELPETWLA ECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEECCHHHHC HGNPWEFERRECSYEIGYGGSVETVNIDEEVQRYVWKPAERVIATAFDTPAVGWRATRVN CCCCCCCCCCCCCEEECCCCCEEEECCHHHHHHHHHCCHHHHHHHHCCCCCCCEEEEEEE TLRLWAAQPIDPILLDAFNAGDHIGALRESNKAESLTRVLYPADATPAGQELRLRQEYFF EEEEEECCCCCHHHHCCCCCCCHHHHHHHCCHHHHHHHHEECCCCCCCCHHHHHHHHHHH SSASLQDILRRHLQQYPDFTSLPDAVAIQLNDTHPAVSVAELVRLLSDVHGLDFEQSWDI CCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHH ARRTFSYTNHTLLPEALESWPVPLFERLLPRHMQIVYAINAKILIEARRVRYATDEAIRN HHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHHEEEEEECCEEEEEHHHHHHHHHHHHHH ISLIDETGERRVRMGNLAFVGSHSINGVSALHTELMKETVFADLHALYPDRINNKTNGIT HHHHCCCCCCCEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCC PRRWLMQCNPDLFGLIREAIGDEFIDNTEALQALDAFADNADFQERFAAVKRANKVRLAK HHHHHHHCCCHHHHHHHHHHCHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH LIQANLGIRLDPSAMFDIQIKRIHEYKRQLLNLIEAVALYDQIRSHPELDWVPRVKLFAG HHHHCCCCEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEC KAAPSYHNAKLIIKLANDIARVINNDPAVRGLLKVVFIPNYNVSLAEVMVPAADLSEQIS CCCCCCCCCEEEEHHHHHHHHHHCCCHHHHHHHHEEEECCCCCCHHHHHCCHHHHHHHHH TAGMEASGTGNMKFALNGALTIGTLDGANVEMRDWVGEENIQIFGMTAEDVGKARAEGHN HCCCCCCCCCCEEEEEECEEEEEECCCCCEEHHHCCCCCCEEEEEECHHHHHHHHHCCCC PRAIIENSRELSQALSAIASGVFSPDDRNRFSGLVDGLYNHDWFMVAADFEAYAKAQREI CHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHH DQLWTKPAAWYSKAVRNTARMGWFSSDRTIRQYAGEIWRAG HHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2645169; 3047129; 9278503; 2975249; 3097003 [H]