| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is hemH [H]
Identifier: 150397889
GI number: 150397889
Start: 2796292
End: 2797329
Strand: Direct
Name: hemH [H]
Synonym: Smed_2691
Alternate gene names: 150397889
Gene position: 2796292-2797329 (Clockwise)
Preceding gene: 150397888
Following gene: 150397900
Centisome position: 73.94
GC content: 60.98
Gene sequence:
>1038_bases ATGACAGCCATGGAAGCCGAGCCGAACACCAACCACCCCGCCGTCAGCTATGGAAAGCTGGGCGTGCTCCTGGTCAATCT CGGCACGCCTGACGGTACCGACGTCACCTCCATGCGCCGCTACCTCCGGGAATTCCTGAGCGACCGGCGCGTCATCGAAT GGTCGCGCCTCTTCTGGTATCCGATCCTCTACGGCATCGTCCTCAACACGCGTCCGCGCAAGGTGGGCAAGGCTTACGAA CTCATCTGGAACAAGGAACTGAATGAAAGCTGGCTCAGAACCTACACACGCAATCAGGCGGCCTTGATGACCGAGGCCTT CGGCGGCCAGCCGCAGGTTATCGTCGACTGGGCGATGCGCTATGGTCGGCCCTCTATCGCCTCGCGGCTCGATGCGCTGC AGAAAGCCGGATGCGAGCGAATTCTCGTATTCCCGCTCTATCCGCAATATGCCGCCGCCACGACAGCCACGGTCAACGAC AAAGCCTTCGAGGCCCTGCTCGGGATGCGCTGGCAGCCCGCGCTCAGAACCGTGCCGCCTTATCACGACGACCCGGTCTA CATCGATGCCCTGGCGACCTCCATCACCAAGCACCTCGCGACACTTGATTGGGAACCGGAGCTGGTTCTCGCCTCCTTCC ACGGCATCCCGAAGAGCTATTTCGAGAAGGGCGATCCCTATTATTGCCAGTGCCAGAAGACGGCGCGGTTGCTGCGCGAA AGACTCGGCTGGCCGAAAGAAAAGCTGCAGATCACCTTCCAATCGCGCTTCGGTCCCGAGGAGTGGCTCCAGCCTTATAC CGACGCCACCGTGGAAAGACTGGCCAAGGAGGGCGTGAAGAAGATCGCCGTCATCAACCCCGGCTTCGTTTCGGACTGTC TGGAAACGCTCGAGGAAATCGCCGGCCAGGCGGCGGAGAGTTTCCACCATAATGGCGGCGAGAAATTCGCCCATATTCCC TGCCTGAACGACAGCCCCGAAGGCATGGCGGTGCTCAACCATGTGGTCCGCCGCGAATTGGAGGGATGGCTCTACTAG
Upstream 100 bases:
>100_bases TTTCCCACCGGCGCGGGCTTTCCCGCGCCGGTATTTCTTTTTAGAAAGGTTTGAAATTGTAGGCAGCCGCGCAGTAACGT GGCGCCCCACGAGGACCGAG
Downstream 100 bases:
>100_bases GTAGACCAACCCAAAGACATCGTGAGCTGCAAGGAAGGCCGTTACGGCCTTTCCTGGAAGAGCTTAAATCCGGTCAAAAT CGAAGGCGAGGGTGCCGCCG
Product: ferrochelatase
Products: NA
Alternate protein names: Heme synthase; Protoheme ferro-lyase [H]
Number of amino acids: Translated: 345; Mature: 344
Protein sequence:
>345_residues MTAMEAEPNTNHPAVSYGKLGVLLVNLGTPDGTDVTSMRRYLREFLSDRRVIEWSRLFWYPILYGIVLNTRPRKVGKAYE LIWNKELNESWLRTYTRNQAALMTEAFGGQPQVIVDWAMRYGRPSIASRLDALQKAGCERILVFPLYPQYAAATTATVND KAFEALLGMRWQPALRTVPPYHDDPVYIDALATSITKHLATLDWEPELVLASFHGIPKSYFEKGDPYYCQCQKTARLLRE RLGWPKEKLQITFQSRFGPEEWLQPYTDATVERLAKEGVKKIAVINPGFVSDCLETLEEIAGQAAESFHHNGGEKFAHIP CLNDSPEGMAVLNHVVRRELEGWLY
Sequences:
>Translated_345_residues MTAMEAEPNTNHPAVSYGKLGVLLVNLGTPDGTDVTSMRRYLREFLSDRRVIEWSRLFWYPILYGIVLNTRPRKVGKAYE LIWNKELNESWLRTYTRNQAALMTEAFGGQPQVIVDWAMRYGRPSIASRLDALQKAGCERILVFPLYPQYAAATTATVND KAFEALLGMRWQPALRTVPPYHDDPVYIDALATSITKHLATLDWEPELVLASFHGIPKSYFEKGDPYYCQCQKTARLLRE RLGWPKEKLQITFQSRFGPEEWLQPYTDATVERLAKEGVKKIAVINPGFVSDCLETLEEIAGQAAESFHHNGGEKFAHIP CLNDSPEGMAVLNHVVRRELEGWLY >Mature_344_residues TAMEAEPNTNHPAVSYGKLGVLLVNLGTPDGTDVTSMRRYLREFLSDRRVIEWSRLFWYPILYGIVLNTRPRKVGKAYEL IWNKELNESWLRTYTRNQAALMTEAFGGQPQVIVDWAMRYGRPSIASRLDALQKAGCERILVFPLYPQYAAATTATVNDK AFEALLGMRWQPALRTVPPYHDDPVYIDALATSITKHLATLDWEPELVLASFHGIPKSYFEKGDPYYCQCQKTARLLRER LGWPKEKLQITFQSRFGPEEWLQPYTDATVERLAKEGVKKIAVINPGFVSDCLETLEEIAGQAAESFHHNGGEKFAHIPC LNDSPEGMAVLNHVVRRELEGWLY
Specific function: Catalyzes the ferrous insertion into protoporphyrin IX [H]
COG id: COG0276
COG function: function code H; Protoheme ferro-lyase (ferrochelatase)
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ferrochelatase family [H]
Homologues:
Organism=Homo sapiens, GI60499021, Length=231, Percent_Identity=26.4069264069264, Blast_Score=88, Evalue=1e-17, Organism=Homo sapiens, GI60499025, Length=231, Percent_Identity=26.4069264069264, Blast_Score=88, Evalue=1e-17, Organism=Escherichia coli, GI1786681, Length=318, Percent_Identity=43.0817610062893, Blast_Score=251, Evalue=4e-68, Organism=Saccharomyces cerevisiae, GI6324750, Length=339, Percent_Identity=25.3687315634218, Blast_Score=72, Evalue=2e-13, Organism=Drosophila melanogaster, GI17864156, Length=337, Percent_Identity=24.6290801186944, Blast_Score=87, Evalue=1e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001015 - InterPro: IPR019772 [H]
Pfam domain/function: PF00762 Ferrochelatase [H]
EC number: =4.99.1.1 [H]
Molecular weight: Translated: 39339; Mature: 39208
Theoretical pI: Translated: 6.94; Mature: 6.94
Prosite motif: PS00534 FERROCHELATASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAMEAEPNTNHPAVSYGKLGVLLVNLGTPDGTDVTSMRRYLREFLSDRRVIEWSRLFWY CCCCCCCCCCCCCCEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHH PILYGIVLNTRPRKVGKAYELIWNKELNESWLRTYTRNQAALMTEAFGGQPQVIVDWAMR HHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHH YGRPSIASRLDALQKAGCERILVFPLYPQYAAATTATVNDKAFEALLGMRWQPALRTVPP CCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHCCCCCHHHHHHHHCCCCCCHHCCCCC YHDDPVYIDALATSITKHLATLDWEPELVLASFHGIPKSYFEKGDPYYCQCQKTARLLRE CCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEHHCCCCHHHHHCCCCEEEEHHHHHHHHHH RLGWPKEKLQITFQSRFGPEEWLQPYTDATVERLAKEGVKKIAVINPGFVSDCLETLEEI HHCCCHHHEEEEEHHCCCHHHHHCCHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHH AGQAAESFHHNGGEKFAHIPCLNDSPEGMAVLNHVVRRELEGWLY HHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TAMEAEPNTNHPAVSYGKLGVLLVNLGTPDGTDVTSMRRYLREFLSDRRVIEWSRLFWY CCCCCCCCCCCCCEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHH PILYGIVLNTRPRKVGKAYELIWNKELNESWLRTYTRNQAALMTEAFGGQPQVIVDWAMR HHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHH YGRPSIASRLDALQKAGCERILVFPLYPQYAAATTATVNDKAFEALLGMRWQPALRTVPP CCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHCCCCCHHHHHHHHCCCCCCHHCCCCC YHDDPVYIDALATSITKHLATLDWEPELVLASFHGIPKSYFEKGDPYYCQCQKTARLLRE CCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEHHCCCCHHHHHCCCCEEEEHHHHHHHHHH RLGWPKEKLQITFQSRFGPEEWLQPYTDATVERLAKEGVKKIAVINPGFVSDCLETLEEI HHCCCHHHEEEEEHHCCCHHHHHCCHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHH AGQAAESFHHNGGEKFAHIPCLNDSPEGMAVLNHVVRRELEGWLY HHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11481430 [H]