Click here to switch to the map view.

The map label for this gene is yjbG [H]

Identifier: 150397882

GI number: 150397882

Start: 2786895

End: 2788778

Strand: Direct

Name: yjbG [H]

Synonym: Smed_2684

Alternate gene names: 150397882

Gene position: 2786895-2788778 (Clockwise)

Preceding gene: 150397878

Following gene: 150397883

Centisome position: 73.69

GC content: 61.94

Gene sequence:

>1884_bases
ATGAAATTCGCTTCGCCACGTCTCGCCGCCTCCGGGCCCACTTTGCTGCGTGCCGCGCTGGCGAACTCCGGGGCTGATCA
GGCAGCCTCGGCGCCGGCCGAACTCGGCGACCTGCCGTCCTGGCGGCTAACGGACCTCTACCTTTCGCCATCCTCCGAGG
AATTCCGCTCCGACCTCGCCAGGGCCGAGGCCGACGCGGTCGCCTTTGAGGCTAAGTGGAAGGGCAAGTTGGACCAGGCC
GCCGGCCGAACGGGTGATGAGGGTCTCGGCGCCGCCGTGAATGAGTTCGAGGCACTGGACGACCTCATGGGCCGCATCGC
TTCGTTTGCCGGGCTCACCTATTTTTCCGACACTTCGAATCCGGCGAACGGCAAGCTCTACGGCGACATCCAGTCGAAGC
TTACCGATATTTCGGCGCATCTCCTGTTCTTCTCGCTGGAGCTCAACCGCATCGACGACAAGCGCGTCGATGCGGCACTC
GCGGCCGATGGCCTTGCCGCCCACTATGCCCCGTGGATTCTCGATCTGCGCAAGGACAAGCCCTATCAGCTCGACGACAG
GCTGGAGCAACTCTTCCTTGAAAAAACGATGACTGGCGCAAACGCCTTCAACCGGCTCTTCGACGAAACGATCGCATCTC
TGACCTTTTCGGTGGACGGCAAGGAGCAGCCGCTGGAAGTGACGCTCAACCTTCTGCAGGATTCCTCCGTAGAGGTGCGC
AGGAAGGCCGCGCTCGCGCTCGCAGAAACCTTCAAGGCAAATATCCGCACCTTCACCCTCGTCACCAATACGCTCGCGAA
GGACAAGGAAATCTCCGACCGCTGGCGCGGATTCGAGGATATAGCCGACAGCCGCCATCTCGCCAATCGCGTGGAGCGCG
AGGTCGTGGATGCTCTGGCCGCATCGGTGAAGGCCGCCTATCCACGCCTCTCGCACCGGTATTATGCGATGAAGGCCAAG
TGGCTCGGCATGGAGCAGATGGATTTCTGGGACCGGAACGCTCCTCTGCCCGAGACCCCGAACGCGCTCATTCCCTGGAA
CGATGCCAGGGATACGGTCCTTTCCGCCTATCACGCCTTCGCCCCGGAAATGGCGTCGATCGCCCGGCGCTTCTTCGACG
ATGGCTGGATCGATGCGCCGGTCCGCCCCGGCAAGGCGCCAGGCGCCTTCGCGCATCCGACCGTCCCTTCCGTGCACCCC
TATGTTCTCGTCAATTATATGGGCAAGCCGCGCGACGTCATGACGCTTGCCCACGAGCTCGGACACGGCGTCCACCAGGT
CCTTGCCGGCGCGCAGGGCGCGCTGATGGCCTCGACACCCCTGACACTTGCGGAAACCGCATCCGTCTTCGGAGAGATGC
TGACCTTCCGCGCCCTCCTCGACCGGACGAAGGACCGGCGCGAGCGAAAGGCGATGCTTGCGCAGAAGGTCGAGGATATG
ATCAACACGGTCGTCCGGCAGATCGCCTTCTACGATTTCGAACGCAAAGTGCATACGGCCCGCAAGGAAGGCGAACTGAC
GGCCGAGGATCTCGGCCGCATATGGATGTCGGTGCAGAGCGAAAGCCTCGGCCCGGCGATCCGGCTTTCGGAGAGTTACG
AGACCTACTGGGCCTATATTCCCCACTTCATCCATTCGCCTTTCTACGTCTATGCCTATGCCTTCGGTGATTGCCTCGTA
AACTCCCTCTATGCCGTCTATCAGAACGCCGAGCGCGGTTTCCAGGAGAAGTATTTCGATATGCTGAAGGCGGGCGGAAC
GAAGCATCATTCCGAACTTCTGGCGCCCTTCGGGCTCGACGCCGCCGATCCGTCGTTCTGGGCACAGGGCCTGTCGATGA
TTGAGGGGCTCATCGACGAACTGGAGGCGCTTGATAAGGCGTAA

Upstream 100 bases:

>100_bases
TGAGAAATGCTTGCATTTTATCCATCGCCGGCGGTAGCAATGGGAGCCATGCCGTTGCCTCGCTTCAGGGTTGGGCCTGT
CCAAAACGAGAGAACCGACA

Downstream 100 bases:

>100_bases
CCCGCTCGGGCAATCAGCCCCGTCGGACCGAGTTTGACAGCGACCGACCTCAATGATCGAACACGCGCCCTATGTCCTCT
TCCGGGACGACAGCGAGAAC

Product: pepF/M3 family oligoendopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 627; Mature: 627

Protein sequence:

>627_residues
MKFASPRLAASGPTLLRAALANSGADQAASAPAELGDLPSWRLTDLYLSPSSEEFRSDLARAEADAVAFEAKWKGKLDQA
AGRTGDEGLGAAVNEFEALDDLMGRIASFAGLTYFSDTSNPANGKLYGDIQSKLTDISAHLLFFSLELNRIDDKRVDAAL
AADGLAAHYAPWILDLRKDKPYQLDDRLEQLFLEKTMTGANAFNRLFDETIASLTFSVDGKEQPLEVTLNLLQDSSVEVR
RKAALALAETFKANIRTFTLVTNTLAKDKEISDRWRGFEDIADSRHLANRVEREVVDALAASVKAAYPRLSHRYYAMKAK
WLGMEQMDFWDRNAPLPETPNALIPWNDARDTVLSAYHAFAPEMASIARRFFDDGWIDAPVRPGKAPGAFAHPTVPSVHP
YVLVNYMGKPRDVMTLAHELGHGVHQVLAGAQGALMASTPLTLAETASVFGEMLTFRALLDRTKDRRERKAMLAQKVEDM
INTVVRQIAFYDFERKVHTARKEGELTAEDLGRIWMSVQSESLGPAIRLSESYETYWAYIPHFIHSPFYVYAYAFGDCLV
NSLYAVYQNAERGFQEKYFDMLKAGGTKHHSELLAPFGLDAADPSFWAQGLSMIEGLIDELEALDKA

Sequences:

>Translated_627_residues
MKFASPRLAASGPTLLRAALANSGADQAASAPAELGDLPSWRLTDLYLSPSSEEFRSDLARAEADAVAFEAKWKGKLDQA
AGRTGDEGLGAAVNEFEALDDLMGRIASFAGLTYFSDTSNPANGKLYGDIQSKLTDISAHLLFFSLELNRIDDKRVDAAL
AADGLAAHYAPWILDLRKDKPYQLDDRLEQLFLEKTMTGANAFNRLFDETIASLTFSVDGKEQPLEVTLNLLQDSSVEVR
RKAALALAETFKANIRTFTLVTNTLAKDKEISDRWRGFEDIADSRHLANRVEREVVDALAASVKAAYPRLSHRYYAMKAK
WLGMEQMDFWDRNAPLPETPNALIPWNDARDTVLSAYHAFAPEMASIARRFFDDGWIDAPVRPGKAPGAFAHPTVPSVHP
YVLVNYMGKPRDVMTLAHELGHGVHQVLAGAQGALMASTPLTLAETASVFGEMLTFRALLDRTKDRRERKAMLAQKVEDM
INTVVRQIAFYDFERKVHTARKEGELTAEDLGRIWMSVQSESLGPAIRLSESYETYWAYIPHFIHSPFYVYAYAFGDCLV
NSLYAVYQNAERGFQEKYFDMLKAGGTKHHSELLAPFGLDAADPSFWAQGLSMIEGLIDELEALDKA
>Mature_627_residues
MKFASPRLAASGPTLLRAALANSGADQAASAPAELGDLPSWRLTDLYLSPSSEEFRSDLARAEADAVAFEAKWKGKLDQA
AGRTGDEGLGAAVNEFEALDDLMGRIASFAGLTYFSDTSNPANGKLYGDIQSKLTDISAHLLFFSLELNRIDDKRVDAAL
AADGLAAHYAPWILDLRKDKPYQLDDRLEQLFLEKTMTGANAFNRLFDETIASLTFSVDGKEQPLEVTLNLLQDSSVEVR
RKAALALAETFKANIRTFTLVTNTLAKDKEISDRWRGFEDIADSRHLANRVEREVVDALAASVKAAYPRLSHRYYAMKAK
WLGMEQMDFWDRNAPLPETPNALIPWNDARDTVLSAYHAFAPEMASIARRFFDDGWIDAPVRPGKAPGAFAHPTVPSVHP
YVLVNYMGKPRDVMTLAHELGHGVHQVLAGAQGALMASTPLTLAETASVFGEMLTFRALLDRTKDRRERKAMLAQKVEDM
INTVVRQIAFYDFERKVHTARKEGELTAEDLGRIWMSVQSESLGPAIRLSESYETYWAYIPHFIHSPFYVYAYAFGDCLV
NSLYAVYQNAERGFQEKYFDMLKAGGTKHHSELLAPFGLDAADPSFWAQGLSMIEGLIDELEALDKA

Specific function: Unknown

COG id: COG1164

COG function: function code E; Oligoendopeptidase F

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M3B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001567
- InterPro:   IPR004438
- InterPro:   IPR013647 [H]

Pfam domain/function: PF01432 Peptidase_M3; PF08439 Peptidase_M3_N [H]

EC number: NA

Molecular weight: Translated: 69643; Mature: 69643

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFASPRLAASGPTLLRAALANSGADQAASAPAELGDLPSWRLTDLYLSPSSEEFRSDLA
CCCCCCCCCCCCHHHHHHHHHCCCCCHHHCCCHHHCCCCCCEEEEEEECCCHHHHHHHHH
RAEADAVAFEAKWKGKLDQAAGRTGDEGLGAAVNEFEALDDLMGRIASFAGLTYFSDTSN
HHHHHHHEEEHHHCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEECCCCC
PANGKLYGDIQSKLTDISAHLLFFSLELNRIDDKRVDAALAADGLAAHYAPWILDLRKDK
CCCCCEEEHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCC
PYQLDDRLEQLFLEKTMTGANAFNRLFDETIASLTFSVDGKEQPLEVTLNLLQDSSVEVR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHCCCHHHH
RKAALALAETFKANIRTFTLVTNTLAKDKEISDRWRGFEDIADSRHLANRVEREVVDALA
HHHHHHHHHHHHCCCEEEEEEHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
ASVKAAYPRLSHRYYAMKAKWLGMEQMDFWDRNAPLPETPNALIPWNDARDTVLSAYHAF
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
APEMASIARRFFDDGWIDAPVRPGKAPGAFAHPTVPSVHPYVLVNYMGKPRDVMTLAHEL
CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHH
GHGVHQVLAGAQGALMASTPLTLAETASVFGEMLTFRALLDRTKDRRERKAMLAQKVEDM
HHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
INTVVRQIAFYDFERKVHTARKEGELTAEDLGRIWMSVQSESLGPAIRLSESYETYWAYI
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHH
PHFIHSPFYVYAYAFGDCLVNSLYAVYQNAERGFQEKYFDMLKAGGTKHHSELLAPFGLD
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCC
AADPSFWAQGLSMIEGLIDELEALDKA
CCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKFASPRLAASGPTLLRAALANSGADQAASAPAELGDLPSWRLTDLYLSPSSEEFRSDLA
CCCCCCCCCCCCHHHHHHHHHCCCCCHHHCCCHHHCCCCCCEEEEEEECCCHHHHHHHHH
RAEADAVAFEAKWKGKLDQAAGRTGDEGLGAAVNEFEALDDLMGRIASFAGLTYFSDTSN
HHHHHHHEEEHHHCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEECCCCC
PANGKLYGDIQSKLTDISAHLLFFSLELNRIDDKRVDAALAADGLAAHYAPWILDLRKDK
CCCCCEEEHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCC
PYQLDDRLEQLFLEKTMTGANAFNRLFDETIASLTFSVDGKEQPLEVTLNLLQDSSVEVR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHCCCHHHH
RKAALALAETFKANIRTFTLVTNTLAKDKEISDRWRGFEDIADSRHLANRVEREVVDALA
HHHHHHHHHHHHCCCEEEEEEHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
ASVKAAYPRLSHRYYAMKAKWLGMEQMDFWDRNAPLPETPNALIPWNDARDTVLSAYHAF
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
APEMASIARRFFDDGWIDAPVRPGKAPGAFAHPTVPSVHPYVLVNYMGKPRDVMTLAHEL
CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHH
GHGVHQVLAGAQGALMASTPLTLAETASVFGEMLTFRALLDRTKDRRERKAMLAQKVEDM
HHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
INTVVRQIAFYDFERKVHTARKEGELTAEDLGRIWMSVQSESLGPAIRLSESYETYWAYI
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHH
PHFIHSPFYVYAYAFGDCLVNSLYAVYQNAERGFQEKYFDMLKAGGTKHHSELLAPFGLD
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCC
AADPSFWAQGLSMIEGLIDELEALDKA
CCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]