Click here to switch to the map view.

The map label for this gene is ybgC [C]

Identifier: 150397830

GI number: 150397830

Start: 2734298

End: 2734741

Strand: Reverse

Name: ybgC [C]

Synonym: Smed_2632

Alternate gene names: 150397830

Gene position: 2734741-2734298 (Counterclockwise)

Preceding gene: 150397834

Following gene: 150397828

Centisome position: 72.31

GC content: 61.94

Gene sequence:

>444_bases
ATGTCACTGATTTCGCTTGCTGGCGAGCTGACGGAGACCGGTCACCGGCTGATCCAGCGGGTCTATTACGAGGACACCGA
CTTCTCGGGCGTCGTCTACCATGCGCGCTACCTCCATTTCATGGAGCGCGCGCGTACCGACTACTTGCGGCTTCTGGGCG
TCGAGCAGGCGTCGCTCGCGATCGAAGGAGACGTGGAAGGCCTGGTCTTCGTCGTCCATCGGATGGAGATCGACTTCAAG
TCGCCGGCGCGCATGGACGACGTCCTGACGATCGAGACGGGGACCGAGAAGGCGGGCGGGGCCAAGATGATCCTGCAGCA
GCAGATCAGGCGGGGCGAATCGCTGCTGATCGCGGCCAAGGTGATCATTGCGGTCATCAACGGCCAAGGGCGGCCAAGGC
GCCTGCCTGAAGCATTGGCAACGAAATTTTTCAAAGCGGGGTGA

Upstream 100 bases:

>100_bases
AGGGTCCTGATAGATTAGGATTGTGACAAAGCTGCAGGTGCTTGCAAATGTCTTTTCGTTCCTGCACAGGAAAACGCAAT
AATCCTCCCGGAGAATTGCC

Downstream 100 bases:

>100_bases
TGAAAAGTCTATGCGGTTTTCCGCCCGCACCCCGCTCTATTCTTTCAAATCGATCACGTTCGACCCGAGTGATATCATCG
TGATCCAGGGCTCAGGCAGA

Product: Pol-Pal system-associated acyl-CoA thioesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 147; Mature: 146

Protein sequence:

>147_residues
MSLISLAGELTETGHRLIQRVYYEDTDFSGVVYHARYLHFMERARTDYLRLLGVEQASLAIEGDVEGLVFVVHRMEIDFK
SPARMDDVLTIETGTEKAGGAKMILQQQIRRGESLLIAAKVIIAVINGQGRPRRLPEALATKFFKAG

Sequences:

>Translated_147_residues
MSLISLAGELTETGHRLIQRVYYEDTDFSGVVYHARYLHFMERARTDYLRLLGVEQASLAIEGDVEGLVFVVHRMEIDFK
SPARMDDVLTIETGTEKAGGAKMILQQQIRRGESLLIAAKVIIAVINGQGRPRRLPEALATKFFKAG
>Mature_146_residues
SLISLAGELTETGHRLIQRVYYEDTDFSGVVYHARYLHFMERARTDYLRLLGVEQASLAIEGDVEGLVFVVHRMEIDFKS
PARMDDVLTIETGTEKAGGAKMILQQQIRRGESLLIAAKVIIAVINGQGRPRRLPEALATKFFKAG

Specific function: Unknown

COG id: COG0824

COG function: function code R; Predicted thioesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 4-hydroxybenzoyl-CoA thioesterase family [H]

Homologues:

Organism=Escherichia coli, GI1786957, Length=136, Percent_Identity=38.9705882352941, Blast_Score=96, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006684
- InterPro:   IPR008272
- InterPro:   IPR006683
- InterPro:   IPR014166 [H]

Pfam domain/function: PF03061 4HBT [H]

EC number: NA

Molecular weight: Translated: 16464; Mature: 16333

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: PS01328 4HBCOA_THIOESTERASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLISLAGELTETGHRLIQRVYYEDTDFSGVVYHARYLHFMERARTDYLRLLGVEQASLA
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEE
IEGDVEGLVFVVHRMEIDFKSPARMDDVLTIETGTEKAGGAKMILQQQIRRGESLLIAAK
EECCCCHHEEEEEHHCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHH
VIIAVINGQGRPRRLPEALATKFFKAG
HHHHHCCCCCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure 
SLISLAGELTETGHRLIQRVYYEDTDFSGVVYHARYLHFMERARTDYLRLLGVEQASLA
CHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEE
IEGDVEGLVFVVHRMEIDFKSPARMDDVLTIETGTEKAGGAKMILQQQIRRGESLLIAAK
EECCCCHHEEEEEHHCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHH
VIIAVINGQGRPRRLPEALATKFFKAG
HHHHHCCCCCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]