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The map label for this gene is rhiR [H]

Identifier: 150397799

GI number: 150397799

Start: 2699229

End: 2699972

Strand: Reverse

Name: rhiR [H]

Synonym: Smed_2601

Alternate gene names: 150397799

Gene position: 2699972-2699229 (Counterclockwise)

Preceding gene: 150397802

Following gene: 150397798

Centisome position: 71.39

GC content: 62.1

Gene sequence:

>744_bases
ATGAAGGTAACGAACGAACCGGCCTCGCGGCGCGAGGGCGAAACGGACATGCTTTTCGAGATCGATCCCGCATCGGTGCG
CACGGAATATGAACTCCTGCATCTGATGAGGCGGCTGATCTCCCGCTACGGCTTTGCGCATTTCATGATCGCGCGGCTGC
CGATGGCCGACGAGCAGCGGTTTTCCGAGCGTCTCATGCTGAGCAACTGGCCGGCGGAACTGGTGCAGCAATACGATGCC
AGCGAAACGTTCCAGGCGAGCCTGCTGATCGAGCGGCTGCGCCAGACGAAGCTGCCCATCGCCGGCGGCCCGGAACTGAT
GGAGCCTGCGCGCAAAGGCGCCGGAAAGGCGCCGGCTATTCTGCTTCCGCCCCATGCCGATATGGCCCATTTCGCGGTGC
TGCTGCACACGACTTATGGCGAACCTTTTGTGGTGGTACTCTCAGGAAAGCGGGACGAACCGGCCGGTGGGGAGCGTGCG
ACGCTCTATCTGGCGCTCGTGCAGCTTTTCGAATGTCTCGAGCGTACCTTCGATGCCGGCAGCGGCGCCCGCGAAAAGCT
TTCGAGCCGTGAGATCGAATGTCTGCGCTGGGCGGCGGCCGGAAAGAGCAGCGACGAGATAGCCATCATCCTCGGCATAT
CGGCCTATACGGTGAGCAGCTATTTCAAGAGCGCGACCCGCAAGCTCGACGCCGTCAACCGCATGCAGGCGATCGCAAGG
GCGATGCGGATGAAGCTGATCTGA

Upstream 100 bases:

>100_bases
GAAGGCCGGCGCGGATGATCTTTGCGGCCAGGGCGGGTCGACCGCCTTGAAAGGACCGCTCCAGTCTAGCCGCGGCAACG
CCGGCAAAACGGTGACCAGA

Downstream 100 bases:

>100_bases
TGGGTCGGGGCCAGGCCTGCCTGCTGGCGGCCCGTTCGGGTCGCCCACTCTTGCCGTGACCGGCACAAGTTTCTATATGT
CGCGGCATGAAACAGCCTGA

Product: regulatory protein LuxR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MKVTNEPASRREGETDMLFEIDPASVRTEYELLHLMRRLISRYGFAHFMIARLPMADEQRFSERLMLSNWPAELVQQYDA
SETFQASLLIERLRQTKLPIAGGPELMEPARKGAGKAPAILLPPHADMAHFAVLLHTTYGEPFVVVLSGKRDEPAGGERA
TLYLALVQLFECLERTFDAGSGAREKLSSREIECLRWAAAGKSSDEIAIILGISAYTVSSYFKSATRKLDAVNRMQAIAR
AMRMKLI

Sequences:

>Translated_247_residues
MKVTNEPASRREGETDMLFEIDPASVRTEYELLHLMRRLISRYGFAHFMIARLPMADEQRFSERLMLSNWPAELVQQYDA
SETFQASLLIERLRQTKLPIAGGPELMEPARKGAGKAPAILLPPHADMAHFAVLLHTTYGEPFVVVLSGKRDEPAGGERA
TLYLALVQLFECLERTFDAGSGAREKLSSREIECLRWAAAGKSSDEIAIILGISAYTVSSYFKSATRKLDAVNRMQAIAR
AMRMKLI
>Mature_247_residues
MKVTNEPASRREGETDMLFEIDPASVRTEYELLHLMRRLISRYGFAHFMIARLPMADEQRFSERLMLSNWPAELVQQYDA
SETFQASLLIERLRQTKLPIAGGPELMEPARKGAGKAPAILLPPHADMAHFAVLLHTTYGEPFVVVLSGKRDEPAGGERA
TLYLALVQLFECLERTFDAGSGAREKLSSREIECLRWAAAGKSSDEIAIILGISAYTVSSYFKSATRKLDAVNRMQAIAR
AMRMKLI

Specific function: Positive regulator of the rhiABC operon [H]

COG id: COG2771

COG function: function code K; DNA-binding HTH domain-containing proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR005143
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03472 Autoind_bind; PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 27677; Mature: 27677

Theoretical pI: Translated: 8.22; Mature: 8.22

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVTNEPASRREGETDMLFEIDPASVRTEYELLHLMRRLISRYGFAHFMIARLPMADEQR
CCCCCCCHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHH
FSERLMLSNWPAELVQQYDASETFQASLLIERLRQTKLPIAGGPELMEPARKGAGKAPAI
HHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCEE
LLPPHADMAHFAVLLHTTYGEPFVVVLSGKRDEPAGGERATLYLALVQLFECLERTFDAG
EECCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
SGAREKLSSREIECLRWAAAGKSSDEIAIILGISAYTVSSYFKSATRKLDAVNRMQAIAR
CCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMRMKLI
HHHHHCC
>Mature Secondary Structure
MKVTNEPASRREGETDMLFEIDPASVRTEYELLHLMRRLISRYGFAHFMIARLPMADEQR
CCCCCCCHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHH
FSERLMLSNWPAELVQQYDASETFQASLLIERLRQTKLPIAGGPELMEPARKGAGKAPAI
HHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCEE
LLPPHADMAHFAVLLHTTYGEPFVVVLSGKRDEPAGGERATLYLALVQLFECLERTFDAG
EECCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
SGAREKLSSREIECLRWAAAGKSSDEIAIILGISAYTVSSYFKSATRKLDAVNRMQAIAR
CCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMRMKLI
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1597418 [H]