Click here to switch to the map view.

The map label for this gene is yddR [H]

Identifier: 150397795

GI number: 150397795

Start: 2694095

End: 2694994

Strand: Reverse

Name: yddR [H]

Synonym: Smed_2597

Alternate gene names: 150397795

Gene position: 2694994-2694095 (Counterclockwise)

Preceding gene: 150397796

Following gene: 150397793

Centisome position: 71.26

GC content: 60.56

Gene sequence:

>900_bases
ATGACAGATCCAAGTCGGAATCCAATGCTCGTAGGCCGCCGTGGCACGCTTAAACTGTTCGCCGCGGCGGCAGTCGCTTC
CGGCGCCGGCGCTCTCCTTTCGGAAAAAACCGCCTTCGGAGCGACGCAGTTCCACCTGACCCAGGTGCGCAACGCGACGC
TACGTGTCGACTACGCCGGCGTTCGGTTCCTCATCGATCCGATGTTCGCCGGGAAGGGCGCAACCCCCGGCTTCGAAGGA
TCGGCAAACAGCAAGCTGAGGAACCCTCTCGTCGACCTGCCTTTGACAGTCGAACAGCTCGCCGATGTAGATGCAGTTGT
CGTGACGCATCTGCATAGCGACCATTGGGACGACGAAGCCGCAGCCATCCTCGATAAGAAGCTACCGCTCTTTGCCCAGA
ACGATGAGGATGCGGCTCATATCAGGAGCCAAGGTTTTCAGGATGTCCGCACCCTCACGGAGAACACCGAGTTCCAAGGA
ATCCACCTTGCGAAGACTGGCGGGCAGCACGGAACAGATGCCACACTGGAAGCCATTCCGGCGCTGGGGCAGGTCTGCGG
GGTGGTCTTCAGCCACCCGTCGAACAAGCGGCTGTACCTTGCCGGCGACACGATCTGGAACGAGCATGTGGCAGCCGCCA
TCTCCCGGCATCATCCTGAAATCATCGTGCTCAACGCCGGCAAAGCGGTCTTCCCCGGTTTCCCTCCGATCATCATGGGA
GAGGAAGACGTGTTGGCCGTTCACAAGGCTGCACCGGAAGCTACGTTGATCGCGAGCCACATGGAGGCGGTAAACCACTG
TGTCCTCAGCCGCGCCGCGCTACGAGCCTATTCGGAGGAGCAGGGCTTTGCATCCAGCCTGCTTGTCCCTGCGGATGGGG
AAACCCTGGCGTTCAAATGA

Upstream 100 bases:

>100_bases
TCATGTCTGCGCTCGCCTTCGGATACGGGAAGGTGCTTTCGACCGACGAATATCTGGCGAAGTGATCCCCACCCGACGAC
CGCAACAGCAAGAGAAAGCC

Downstream 100 bases:

>100_bases
CCGGCATTCATGATCTCGGAGCAAGTCCGTCGAGCAGGAAGTCTAGACCCTTCCTGAATGCGCCGTCCCAATCGTCATCC
AACAGCAGCCGAGAGCGTTC

Product: beta-lactamase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 298

Protein sequence:

>299_residues
MTDPSRNPMLVGRRGTLKLFAAAAVASGAGALLSEKTAFGATQFHLTQVRNATLRVDYAGVRFLIDPMFAGKGATPGFEG
SANSKLRNPLVDLPLTVEQLADVDAVVVTHLHSDHWDDEAAAILDKKLPLFAQNDEDAAHIRSQGFQDVRTLTENTEFQG
IHLAKTGGQHGTDATLEAIPALGQVCGVVFSHPSNKRLYLAGDTIWNEHVAAAISRHHPEIIVLNAGKAVFPGFPPIIMG
EEDVLAVHKAAPEATLIASHMEAVNHCVLSRAALRAYSEEQGFASSLLVPADGETLAFK

Sequences:

>Translated_299_residues
MTDPSRNPMLVGRRGTLKLFAAAAVASGAGALLSEKTAFGATQFHLTQVRNATLRVDYAGVRFLIDPMFAGKGATPGFEG
SANSKLRNPLVDLPLTVEQLADVDAVVVTHLHSDHWDDEAAAILDKKLPLFAQNDEDAAHIRSQGFQDVRTLTENTEFQG
IHLAKTGGQHGTDATLEAIPALGQVCGVVFSHPSNKRLYLAGDTIWNEHVAAAISRHHPEIIVLNAGKAVFPGFPPIIMG
EEDVLAVHKAAPEATLIASHMEAVNHCVLSRAALRAYSEEQGFASSLLVPADGETLAFK
>Mature_298_residues
TDPSRNPMLVGRRGTLKLFAAAAVASGAGALLSEKTAFGATQFHLTQVRNATLRVDYAGVRFLIDPMFAGKGATPGFEGS
ANSKLRNPLVDLPLTVEQLADVDAVVVTHLHSDHWDDEAAAILDKKLPLFAQNDEDAAHIRSQGFQDVRTLTENTEFQGI
HLAKTGGQHGTDATLEAIPALGQVCGVVFSHPSNKRLYLAGDTIWNEHVAAAISRHHPEIIVLNAGKAVFPGFPPIIMGE
EDVLAVHKAAPEATLIASHMEAVNHCVLSRAALRAYSEEQGFASSLLVPADGETLAFK

Specific function: Unknown

COG id: COG2220

COG function: function code R; Predicted Zn-dependent hydrolases of the beta-lactamase fold

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0173 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279 [H]

Pfam domain/function: PF00753 Lactamase_B [H]

EC number: NA

Molecular weight: Translated: 31905; Mature: 31774

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDPSRNPMLVGRRGTLKLFAAAAVASGAGALLSEKTAFGATQFHLTQVRNATLRVDYAG
CCCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHCCHHCCCHHEEHHHHCCCEEEEEECC
VRFLIDPMFAGKGATPGFEGSANSKLRNPLVDLPLTVEQLADVDAVVVTHLHSDHWDDEA
EEEEEEHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCHHHHCCCHHEEEEHHCCCCCCCHH
AAILDKKLPLFAQNDEDAAHIRSQGFQDVRTLTENTEFQGIHLAKTGGQHGTDATLEAIP
HHHHHCCCCEEECCCCHHHHHHHCCHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHH
ALGQVCGVVFSHPSNKRLYLAGDTIWNEHVAAAISRHHPEIIVLNAGKAVFPGFPPIIMG
HHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCEECCCCCCEEEC
EEDVLAVHKAAPEATLIASHMEAVNHCVLSRAALRAYSEEQGFASSLLVPADGETLAFK
CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEECCCCCEEECC
>Mature Secondary Structure 
TDPSRNPMLVGRRGTLKLFAAAAVASGAGALLSEKTAFGATQFHLTQVRNATLRVDYAG
CCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHCCHHCCCHHEEHHHHCCCEEEEEECC
VRFLIDPMFAGKGATPGFEGSANSKLRNPLVDLPLTVEQLADVDAVVVTHLHSDHWDDEA
EEEEEEHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCHHHHCCCHHEEEEHHCCCCCCCHH
AAILDKKLPLFAQNDEDAAHIRSQGFQDVRTLTENTEFQGIHLAKTGGQHGTDATLEAIP
HHHHHCCCCEEECCCCHHHHHHHCCHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHH
ALGQVCGVVFSHPSNKRLYLAGDTIWNEHVAAAISRHHPEIIVLNAGKAVFPGFPPIIMG
HHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCEECCCCCCEEEC
EEDVLAVHKAAPEATLIASHMEAVNHCVLSRAALRAYSEEQGFASSLLVPADGETLAFK
CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEECCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9341680; 9384377 [H]