| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is 150397683
Identifier: 150397683
GI number: 150397683
Start: 2566791
End: 2567969
Strand: Reverse
Name: 150397683
Synonym: Smed_2483
Alternate gene names: NA
Gene position: 2567969-2566791 (Counterclockwise)
Preceding gene: 150397684
Following gene: 150397682
Centisome position: 67.9
GC content: 61.83
Gene sequence:
>1179_bases ATGAGCGGAGGATTTCTGGTGAGTTTCGAACGGGCGCTGAGCGCCGAATATATTCAGCCCGCCGACGCATCCAGCGCGAT GCTCGTCGGGCGCGTCTGGTCCAAAACCGCCGGCGGACCCTGTCCGGTCCTGATCAAGGGCGGAGAGGTGTTCGACCTGA CCCCGATAGCGGCAACGATCTCGGCGCTTCTCGAGATCGACGGGCTGGCGGACGCTTTGCGCGATTCCACGCGCTTTGCG AGTCTCGGCTCTCTCGACGCGTTCCTCACGGGCGAGGCGGGCGATCTTCTCGCGCCAGCCGATCTGCAGGCCGTCAAGGC GGCTGGCGTCACCTTTGCGGACAGCATGCTGGAGCGCGTGATCGAGGAACAGGCCAAGGGCGATCCGCTGCGTGCGCAGG AGATCCGCGGCCGGCTGGCGCCCGTCCTCGGCGACAATCTCAAGGGCCTCGTCGCCGGTTCGCAGAAGGCCGCCGAGGTC AAGAAACTGCTCCAGGAACTCGGTCTTTGGTCGCAATACCTCGAAGTGGGTATCGGTCCCGACGCCGAAATCTTCACCAA GGCGCAGCCTATGTCTTCGGTCGGCTGTGGTGCGGATATCGGCATCCACCCCAAATCCGACTGGAACAATCCCGAGCCGG AGGTGGTCCTGGCCGTCACGTCGAAGGGCAAGATCGTCGGCGCCACACTCGGCAATGACGTCAATCTTCGCGATTTCGAA GGACGTTCCGCACTGCTCCTCAGCAAGGCCAAGGACAATAATGCGTCCTGCTCGATCGGCCCTTTCATCCGGCTCTTCTA CGGCGATTTCACGATTGAGGACGTAAAGCAGGCGGAGGTCTCCCTCGTCGTCGACGGCAGGGAAGGGTTCAGGATGACCG GCGTCAGTCCGATGTCTGCGATCAGCCGCAGCCCTGAAGATCTGGTTTCGCAGCTTCTGAATGACAACCATCAGTATCCT GACGGGGTCGTTTTCTTCCTCGGGACCATGTTTGCGCCGGTGAAGGATCGTCGAGGCGCGGGACTTGGTTTCACGCATGA AATCGGAGACAGGGTCGAGATTTCGACCCCGCATCTCGGGCGACTCGTAAACTGGGTCGATCACAGCGACCGCTGCCCGA AATGGAGTTTCGGCATCGGCGCTCTGATGAAGAATCTTGCCGCGCGCGGGCTCTTGTAG
Upstream 100 bases:
>100_bases TTACCCACGGCCTAGACATGGCCCAAAAGTCATACTAGAAGCAGGTCATCTCATTGTCAGACATCCTGACAATGAGAGGC GCGTACCTTCGAGGTACGAG
Downstream 100 bases:
>100_bases GCGGAACGGGAGGGGCAGATGCAAAAAGCGATCGATATTTTCTACAGACTTCTCGGGCTGCTGCTGATCATGCTGCTCGC AGGCATGGCCTTGATGGTGT
Product: hypothetical protein
Products: NA
Alternate protein names: Fumarylacetoacetate Hydrolase Family Protein; Fumarylacetoacetase Family Protein; Fumarylacetoacetate Hydrolase Family Protein-Like Protein; 2-Hydroxyhepta-2 4-Diene-1 7-Dioate Isomaerase; 2-Keto-3-Deoxyxylonate Dehydratase
Number of amino acids: Translated: 392; Mature: 391
Protein sequence:
>392_residues MSGGFLVSFERALSAEYIQPADASSAMLVGRVWSKTAGGPCPVLIKGGEVFDLTPIAATISALLEIDGLADALRDSTRFA SLGSLDAFLTGEAGDLLAPADLQAVKAAGVTFADSMLERVIEEQAKGDPLRAQEIRGRLAPVLGDNLKGLVAGSQKAAEV KKLLQELGLWSQYLEVGIGPDAEIFTKAQPMSSVGCGADIGIHPKSDWNNPEPEVVLAVTSKGKIVGATLGNDVNLRDFE GRSALLLSKAKDNNASCSIGPFIRLFYGDFTIEDVKQAEVSLVVDGREGFRMTGVSPMSAISRSPEDLVSQLLNDNHQYP DGVVFFLGTMFAPVKDRRGAGLGFTHEIGDRVEISTPHLGRLVNWVDHSDRCPKWSFGIGALMKNLAARGLL
Sequences:
>Translated_392_residues MSGGFLVSFERALSAEYIQPADASSAMLVGRVWSKTAGGPCPVLIKGGEVFDLTPIAATISALLEIDGLADALRDSTRFA SLGSLDAFLTGEAGDLLAPADLQAVKAAGVTFADSMLERVIEEQAKGDPLRAQEIRGRLAPVLGDNLKGLVAGSQKAAEV KKLLQELGLWSQYLEVGIGPDAEIFTKAQPMSSVGCGADIGIHPKSDWNNPEPEVVLAVTSKGKIVGATLGNDVNLRDFE GRSALLLSKAKDNNASCSIGPFIRLFYGDFTIEDVKQAEVSLVVDGREGFRMTGVSPMSAISRSPEDLVSQLLNDNHQYP DGVVFFLGTMFAPVKDRRGAGLGFTHEIGDRVEISTPHLGRLVNWVDHSDRCPKWSFGIGALMKNLAARGLL >Mature_391_residues SGGFLVSFERALSAEYIQPADASSAMLVGRVWSKTAGGPCPVLIKGGEVFDLTPIAATISALLEIDGLADALRDSTRFAS LGSLDAFLTGEAGDLLAPADLQAVKAAGVTFADSMLERVIEEQAKGDPLRAQEIRGRLAPVLGDNLKGLVAGSQKAAEVK KLLQELGLWSQYLEVGIGPDAEIFTKAQPMSSVGCGADIGIHPKSDWNNPEPEVVLAVTSKGKIVGATLGNDVNLRDFEG RSALLLSKAKDNNASCSIGPFIRLFYGDFTIEDVKQAEVSLVVDGREGFRMTGVSPMSAISRSPEDLVSQLLNDNHQYPD GVVFFLGTMFAPVKDRRGAGLGFTHEIGDRVEISTPHLGRLVNWVDHSDRCPKWSFGIGALMKNLAARGLL
Specific function: Unknown
COG id: COG3970
COG function: function code R; Fumarylacetoacetate (FAA) hydrolase family protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41695; Mature: 41564
Theoretical pI: Translated: 4.85; Mature: 4.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGGFLVSFERALSAEYIQPADASSAMLVGRVWSKTAGGPCPVLIKGGEVFDLTPIAATI CCCCEEEEHHHHHHHHHCCCCCCCCCEEEHHHHHCCCCCCCCEEEECCCEEECCHHHHHH SALLEIDGLADALRDSTRFASLGSLDAFLTGEAGDLLAPADLQAVKAAGVTFADSMLERV HHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHH IEEQAKGDPLRAQEIRGRLAPVLGDNLKGLVAGSQKAAEVKKLLQELGLWSQYLEVGIGP HHHHHCCCCCCHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHCHHHHHHHHCCCC DAEIFTKAQPMSSVGCGADIGIHPKSDWNNPEPEVVLAVTSKGKIVGATLGNDVNLRDFE CHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCEECC GRSALLLSKAKDNNASCSIGPFIRLFYGDFTIEDVKQAEVSLVVDGREGFRMTGVSPMSA CCCEEEEEECCCCCCCCCHHHHHEEHCCCCCHHHHCCCEEEEEEECCCCCEECCCCHHHH ISRSPEDLVSQLLNDNHQYPDGVVFFLGTMFAPVKDRRGAGLGFTHEIGDRVEISTPHLG HCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHCCCEEEECCCHHH RLVNWVDHSDRCPKWSFGIGALMKNLAARGLL HHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCC >Mature Secondary Structure SGGFLVSFERALSAEYIQPADASSAMLVGRVWSKTAGGPCPVLIKGGEVFDLTPIAATI CCCEEEEHHHHHHHHHCCCCCCCCCEEEHHHHHCCCCCCCCEEEECCCEEECCHHHHHH SALLEIDGLADALRDSTRFASLGSLDAFLTGEAGDLLAPADLQAVKAAGVTFADSMLERV HHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHH IEEQAKGDPLRAQEIRGRLAPVLGDNLKGLVAGSQKAAEVKKLLQELGLWSQYLEVGIGP HHHHHCCCCCCHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHCHHHHHHHHCCCC DAEIFTKAQPMSSVGCGADIGIHPKSDWNNPEPEVVLAVTSKGKIVGATLGNDVNLRDFE CHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCEECC GRSALLLSKAKDNNASCSIGPFIRLFYGDFTIEDVKQAEVSLVVDGREGFRMTGVSPMSA CCCEEEEEECCCCCCCCCHHHHHEEHCCCCCHHHHCCCEEEEEEECCCCCEECCCCHHHH ISRSPEDLVSQLLNDNHQYPDGVVFFLGTMFAPVKDRRGAGLGFTHEIGDRVEISTPHLG HCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHCCCEEEECCCHHH RLVNWVDHSDRCPKWSFGIGALMKNLAARGLL HHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA