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The map label for this gene is ydfH [H]

Identifier: 150397658

GI number: 150397658

Start: 2540642

End: 2541349

Strand: Direct

Name: ydfH [H]

Synonym: Smed_2458

Alternate gene names: 150397658

Gene position: 2540642-2541349 (Clockwise)

Preceding gene: 150397634

Following gene: 150397659

Centisome position: 67.18

GC content: 64.12

Gene sequence:

>708_bases
ATGAGTACACTTGACCGCGGCCCGTCGCTGACCGATCAGGCAGTGCAGCAAATCCGCGACCGCATCGTGCGCGGCGAGTT
CCAGCTTGGCGAACCGCTCTCGGAAATCGCGCTCGCCACCGAGCTCGGCGTTTCCAAGACGCCGGTGCGCGAGGCGCTGA
TGGTGCTTAAGCGTCAGGGCCTCATCGAAGTGCATCCGCAGCGAGGGTCGTTCGTCTTCGACATGGATGCGAAACAGGTC
CGGAAGCTTTCCGAGCTGCGCGAAGTGCTCGAACTGGCGGCCATGCGGATGGCACTTGCCAACGACCGGCAGGCACTCGC
CCGGCAATGGACCGATGTTGTCGGGAAGATGCGCAAGGCGCTCGATGCCGACGACGCGGAGCTCTACCGCACGCTTGACG
GCGGCTTCCATATGGTCCTCTTCGAACTTGCCGACAATGCCTACCTTCTGGAAGCCTACGAGTTGATCGCCTTTCGCGTT
CAGGCCCTGCGCAACCGACTCTCGCTCGCTCCTTCGCTCAACGCCTCTTCGTTCGAAGACCATCTGCGCCTTGCCGAACT
GATCGCCGGAGGCAAGGACGGCGACGCAATCGACCTCATGGGTAGGCACATCGCCACGACGCGGGAGCACTATCTGGCTG
CGGCGAAGGCGCGGGACGCCGAAGGGACGGCGCCGACCAAAGGACGGCGACGCGCGACCCGTCGCTGA

Upstream 100 bases:

>100_bases
GCGACGTAAATTGGCGTATCAAATCTGATATCTCAGTGTAAAGAGCAGGCGATTTCGGCATGCCTGCTGCTTTGCGACGT
TTGAATGGAAGGGAGACCTC

Downstream 100 bases:

>100_bases
AACCCTTTCCTCGCCTGGCCGAAAACGGCATTGACACAGAACGCCCATGCAATAGCCATCCCGTAGCTTAACTACATTTG
CCGAATTCGCTATGCGAGCA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 234

Protein sequence:

>235_residues
MSTLDRGPSLTDQAVQQIRDRIVRGEFQLGEPLSEIALATELGVSKTPVREALMVLKRQGLIEVHPQRGSFVFDMDAKQV
RKLSELREVLELAAMRMALANDRQALARQWTDVVGKMRKALDADDAELYRTLDGGFHMVLFELADNAYLLEAYELIAFRV
QALRNRLSLAPSLNASSFEDHLRLAELIAGGKDGDAIDLMGRHIATTREHYLAAAKARDAEGTAPTKGRRRATRR

Sequences:

>Translated_235_residues
MSTLDRGPSLTDQAVQQIRDRIVRGEFQLGEPLSEIALATELGVSKTPVREALMVLKRQGLIEVHPQRGSFVFDMDAKQV
RKLSELREVLELAAMRMALANDRQALARQWTDVVGKMRKALDADDAELYRTLDGGFHMVLFELADNAYLLEAYELIAFRV
QALRNRLSLAPSLNASSFEDHLRLAELIAGGKDGDAIDLMGRHIATTREHYLAAAKARDAEGTAPTKGRRRATRR
>Mature_234_residues
STLDRGPSLTDQAVQQIRDRIVRGEFQLGEPLSEIALATELGVSKTPVREALMVLKRQGLIEVHPQRGSFVFDMDAKQVR
KLSELREVLELAAMRMALANDRQALARQWTDVVGKMRKALDADDAELYRTLDGGFHMVLFELADNAYLLEAYELIAFRVQ
ALRNRLSLAPSLNASSFEDHLRLAELIAGGKDGDAIDLMGRHIATTREHYLAAAKARDAEGTAPTKGRRRATRR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=219, Percent_Identity=27.8538812785388, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26238; Mature: 26106

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTLDRGPSLTDQAVQQIRDRIVRGEFQLGEPLSEIALATELGVSKTPVREALMVLKRQG
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCC
LIEVHPQRGSFVFDMDAKQVRKLSELREVLELAAMRMALANDRQALARQWTDVVGKMRKA
CEEECCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LDADDAELYRTLDGGFHMVLFELADNAYLLEAYELIAFRVQALRNRLSLAPSLNASSFED
HCCCHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
HLRLAELIAGGKDGDAIDLMGRHIATTREHYLAAAKARDAEGTAPTKGRRRATRR
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCC
>Mature Secondary Structure 
STLDRGPSLTDQAVQQIRDRIVRGEFQLGEPLSEIALATELGVSKTPVREALMVLKRQG
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCC
LIEVHPQRGSFVFDMDAKQVRKLSELREVLELAAMRMALANDRQALARQWTDVVGKMRKA
CEEECCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LDADDAELYRTLDGGFHMVLFELADNAYLLEAYELIAFRVQALRNRLSLAPSLNASSFED
HCCCHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
HLRLAELIAGGKDGDAIDLMGRHIATTREHYLAAAKARDAEGTAPTKGRRRATRR
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]