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The map label for this gene is ugpB [C]

Identifier: 150397620

GI number: 150397620

Start: 2498105

End: 2499367

Strand: Direct

Name: ugpB [C]

Synonym: Smed_2420

Alternate gene names: 150397620

Gene position: 2498105-2499367 (Clockwise)

Preceding gene: 150397619

Following gene: 150397621

Centisome position: 66.05

GC content: 60.17

Gene sequence:

>1263_bases
ATGAGGAAACTGATCACAGCCGCCCTGCTTGCCACCCTGATGGCCGGCAGCGCCCTTGCAGATACGAAGCTGAAGCTCGT
GGAGGTCATAACCAGCCCCGAGCGCACCGAAACGCTGAAGTCGATCGTCGCCAAGTTCGAAGAGGCGAACCCCGGCACGA
CCGTCGAGATCATTTCGCTGCCCTGGGGCGAAGCCTTCCAGAAATTCGCCACCATGGTATCGGCCGGCGAAATCCCCGAT
GTCATGGAAATGCCCGACACCTGGCTGTCGCTCTATGCCAATAACGGCATGCTCGAAAGCCTCGAGCCCTATCTCGCAAA
ATGGGAGCACACGCCAGGCCTCACCGAGCGCGCGCTCGAACTCGGCCGGGACGTCAACGACACAGCTTACATGTTGCCTT
ACGGCTTCTATCTCCGGGCGATGTTCTACAACAAGAAGCTGCTCTCCGAAGCGGGTGTCGCCGAACCGCCGAAGACGATG
GACGACTTCGTCAAGGCTTCCGAGGCGGTCTCCAAGCTGCCGGGCAAATCCGGTTACTGCCTGCGCGGCGGTCCGGGCGG
GCTCAACGGCTGGGTGATGTTCGGCGCGACCATGGCCGGCGACAACAAGTTCTTCAACGAGGACGGCACTTCCACGATGA
ACAGCGAAGGCTGGATCAAAGGCCTCACCTGGGTCATCGACCTCTACAAGAAGGGTCTGGCGCCGAAGGATAGCGTCAAC
TGGGGCTTCAACGAGATCGTCGCGGGCTTCTACAGCGGCACCTGCGCCTTTCTCGACCAGGACCCGGATGCCTTGATCGC
TATTGCCCAGCGCATGAAGCCGGAGGATTTCGGCGTGACCACCATGCCGAAGGGGCCGAGCGGCAAGGCCTTCACCACGA
TCGGCTTCGCCGGCTGGTCGATCCTTGCCGCCAGCCAGAACAAGGATCTCTCCTGGAAGCTGATCGAAACGCTGGAAGGC
CCGGAAGGCAATATCGAGTGGAATAAGCGCACCGGCGCGCTGCCCGTTCACAAGTCGGCCGAAAAGGACCCCTTTTATGC
GAGCGCGCAGTTCAAGGGCTGGTTCGACGAACTCGCCGACAAGGACGTCGTGCTGACGGTCATGCCGACCTATCTCGAAG
AATTCGCCTTCTTCAAAGATTCGCTCGCCATCAAGACGACCCAGGAAGCTCTCCTCGGCGACATCACGCCGGAAGAACTT
GCCAACCAGTGGGCCGACTACCTGACCAAGGCTCAGCAGAAATATCTCGCGAACAAGAAATAG

Upstream 100 bases:

>100_bases
TGGAGGGAACGGAGGCCCTCTGGAGCGACCTCGAAGCGGCGATGACAGCCGCTTCATCAGGCTGACGAACACGCAACCAG
CGAGAACAAAGGGAACAAAA

Downstream 100 bases:

>100_bases
CCTGGGCACCGGCGGCGGTTCAGCCGCCGCCGGCCGTCTCGCCTGATGACAAGAAGGCACGCCGGTCCATAACGGCGGTC
AAAAAAGGGGAAATTTCGAT

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 420

Protein sequence:

>420_residues
MRKLITAALLATLMAGSALADTKLKLVEVITSPERTETLKSIVAKFEEANPGTTVEIISLPWGEAFQKFATMVSAGEIPD
VMEMPDTWLSLYANNGMLESLEPYLAKWEHTPGLTERALELGRDVNDTAYMLPYGFYLRAMFYNKKLLSEAGVAEPPKTM
DDFVKASEAVSKLPGKSGYCLRGGPGGLNGWVMFGATMAGDNKFFNEDGTSTMNSEGWIKGLTWVIDLYKKGLAPKDSVN
WGFNEIVAGFYSGTCAFLDQDPDALIAIAQRMKPEDFGVTTMPKGPSGKAFTTIGFAGWSILAASQNKDLSWKLIETLEG
PEGNIEWNKRTGALPVHKSAEKDPFYASAQFKGWFDELADKDVVLTVMPTYLEEFAFFKDSLAIKTTQEALLGDITPEEL
ANQWADYLTKAQQKYLANKK

Sequences:

>Translated_420_residues
MRKLITAALLATLMAGSALADTKLKLVEVITSPERTETLKSIVAKFEEANPGTTVEIISLPWGEAFQKFATMVSAGEIPD
VMEMPDTWLSLYANNGMLESLEPYLAKWEHTPGLTERALELGRDVNDTAYMLPYGFYLRAMFYNKKLLSEAGVAEPPKTM
DDFVKASEAVSKLPGKSGYCLRGGPGGLNGWVMFGATMAGDNKFFNEDGTSTMNSEGWIKGLTWVIDLYKKGLAPKDSVN
WGFNEIVAGFYSGTCAFLDQDPDALIAIAQRMKPEDFGVTTMPKGPSGKAFTTIGFAGWSILAASQNKDLSWKLIETLEG
PEGNIEWNKRTGALPVHKSAEKDPFYASAQFKGWFDELADKDVVLTVMPTYLEEFAFFKDSLAIKTTQEALLGDITPEEL
ANQWADYLTKAQQKYLANKK
>Mature_420_residues
MRKLITAALLATLMAGSALADTKLKLVEVITSPERTETLKSIVAKFEEANPGTTVEIISLPWGEAFQKFATMVSAGEIPD
VMEMPDTWLSLYANNGMLESLEPYLAKWEHTPGLTERALELGRDVNDTAYMLPYGFYLRAMFYNKKLLSEAGVAEPPKTM
DDFVKASEAVSKLPGKSGYCLRGGPGGLNGWVMFGATMAGDNKFFNEDGTSTMNSEGWIKGLTWVIDLYKKGLAPKDSVN
WGFNEIVAGFYSGTCAFLDQDPDALIAIAQRMKPEDFGVTTMPKGPSGKAFTTIGFAGWSILAASQNKDLSWKLIETLEG
PEGNIEWNKRTGALPVHKSAEKDPFYASAQFKGWFDELADKDVVLTVMPTYLEEFAFFKDSLAIKTTQEALLGDITPEEL
ANQWADYLTKAQQKYLANKK

Specific function: Probably part of an ABC transporter complex [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 46262; Mature: 46262

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKLITAALLATLMAGSALADTKLKLVEVITSPERTETLKSIVAKFEEANPGTTVEIISL
CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEEEC
PWGEAFQKFATMVSAGEIPDVMEMPDTWLSLYANNGMLESLEPYLAKWEHTPGLTERALE
CCHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHH
LGRDVNDTAYMLPYGFYLRAMFYNKKLLSEAGVAEPPKTMDDFVKASEAVSKLPGKSGYC
HCCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEE
LRGGPGGLNGWVMFGATMAGDNKFFNEDGTSTMNSEGWIKGLTWVIDLYKKGLAPKDSVN
ECCCCCCCCCEEEEEEEECCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
WGFNEIVAGFYSGTCAFLDQDPDALIAIAQRMKPEDFGVTTMPKGPSGKAFTTIGFAGWS
CCHHHHHHHHHCCEEEEECCCHHHHHHHHHHCCCCCCCEECCCCCCCCCEEEEEEECCEE
ILAASQNKDLSWKLIETLEGPEGNIEWNKRTGALPVHKSAEKDPFYASAQFKGWFDELAD
EEEECCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCEECCCCCHHHHHHCC
KDVVLTVMPTYLEEFAFFKDSLAIKTTQEALLGDITPEELANQWADYLTKAQQKYLANKK
CCEEEEECHHHHHHHHHHHHHHHHEEHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRKLITAALLATLMAGSALADTKLKLVEVITSPERTETLKSIVAKFEEANPGTTVEIISL
CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEEEC
PWGEAFQKFATMVSAGEIPDVMEMPDTWLSLYANNGMLESLEPYLAKWEHTPGLTERALE
CCHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHH
LGRDVNDTAYMLPYGFYLRAMFYNKKLLSEAGVAEPPKTMDDFVKASEAVSKLPGKSGYC
HCCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEE
LRGGPGGLNGWVMFGATMAGDNKFFNEDGTSTMNSEGWIKGLTWVIDLYKKGLAPKDSVN
ECCCCCCCCCEEEEEEEECCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
WGFNEIVAGFYSGTCAFLDQDPDALIAIAQRMKPEDFGVTTMPKGPSGKAFTTIGFAGWS
CCHHHHHHHHHCCEEEEECCCHHHHHHHHHHCCCCCCCEECCCCCCCCCEEEEEEECCEE
ILAASQNKDLSWKLIETLEGPEGNIEWNKRTGALPVHKSAEKDPFYASAQFKGWFDELAD
EEEECCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCEECCCCCHHHHHHCC
KDVVLTVMPTYLEEFAFFKDSLAIKTTQEALLGDITPEELANQWADYLTKAQQKYLANKK
CCEEEEECHHHHHHHHHHHHHHHHEEHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA