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The map label for this gene is araQ [H]

Identifier: 150397513

GI number: 150397513

Start: 2392269

End: 2393111

Strand: Reverse

Name: araQ [H]

Synonym: Smed_2313

Alternate gene names: 150397513

Gene position: 2393111-2392269 (Counterclockwise)

Preceding gene: 150397514

Following gene: 150397512

Centisome position: 63.28

GC content: 57.77

Gene sequence:

>843_bases
ATGAGTAAACCGTCTCTCTATTTCAGTAATTCGCAGGTAACCGCCGTCCGCTTGATCTGGATGACGGTGGCGGCCATCCT
CGCGCTAATGACGGTCTTCCCTTTGTTGTGGATGGTCTCGATCGCCTTCAAGGGCGCTCAGGAGTCGTTTTCTCCGGCGC
TGCTGCCGTCGGCGCCGACCTGGTCGAACTTCGTCTATGTGTTGACCGAGGTGCCGTTCATCCGCTATATGCTGAACAGC
CTTTTCGTGTCGGTCACCGTCACGGTGGTGGCGCTGTTCTTCCATTCGATGGCGGGTTACGCGCTGGCCAGGCTGCGCTT
CCCGGGCCGGGAACTGATCTTCCTCGCCATCTTCTCGACTCTGCTCGTGTCGCTGCCGGTCGTCATCGTGCCGCTGTTCA
TCATCGTGCGCGCCATGGGCATGCTGAACACCTATGGCGGGATCATCATTCCGTCGATCTTCAACGCCTTCGGCATCTTC
CTGCTCAGGCAATATTATCTGTCCTTGCCGCGTGAAATCGAGGAGGCGGCCGTGATGGACGGCGCCGGATACTGGCGCAT
CTATTGGAGCGTCATCCTGCCTCTGTCCAAGCCAATTCTGTCGGCACTGGCCATCCTGTTCTTTCTCGCCAACTGGAATG
CCTTTCTGTGGCCGCTGACGGTCGCATCCGACCAGAAATTCTGGGTCGTGCAGGTCGGTATCGCCAACTTCAAGAGCGAG
TATTCGGCGGCCTGGAACTACATGTTGGCGGCTTCGACGATCGTTGCCATCCCCACCCTCGTCCTGTTCCTGGTCTTCCA
ACGGCAGATCATGGACTCGATAAAGACAAGCGGTCTGAAATGA

Upstream 100 bases:

>100_bases
GCGTTCGGCTATGCAGCGGCCATGGCCTCGATCCTGGTGATTTCGCTGATGGCCATGACCGGCCTGATGTTCCTGCTGAC
CCGCGGAGGCCGCTTCAGCT

Downstream 100 bases:

>100_bases
CAACCCAAAACGCCAGGGATCAAAGAATGAACAATGCCGGCCTTTCACCGTTGCGCGGTCTCGCAAAGCTGCGCGATGCA
AAGACGAGACGATTCTCGAG

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 279

Protein sequence:

>280_residues
MSKPSLYFSNSQVTAVRLIWMTVAAILALMTVFPLLWMVSIAFKGAQESFSPALLPSAPTWSNFVYVLTEVPFIRYMLNS
LFVSVTVTVVALFFHSMAGYALARLRFPGRELIFLAIFSTLLVSLPVVIVPLFIIVRAMGMLNTYGGIIIPSIFNAFGIF
LLRQYYLSLPREIEEAAVMDGAGYWRIYWSVILPLSKPILSALAILFFLANWNAFLWPLTVASDQKFWVVQVGIANFKSE
YSAAWNYMLAASTIVAIPTLVLFLVFQRQIMDSIKTSGLK

Sequences:

>Translated_280_residues
MSKPSLYFSNSQVTAVRLIWMTVAAILALMTVFPLLWMVSIAFKGAQESFSPALLPSAPTWSNFVYVLTEVPFIRYMLNS
LFVSVTVTVVALFFHSMAGYALARLRFPGRELIFLAIFSTLLVSLPVVIVPLFIIVRAMGMLNTYGGIIIPSIFNAFGIF
LLRQYYLSLPREIEEAAVMDGAGYWRIYWSVILPLSKPILSALAILFFLANWNAFLWPLTVASDQKFWVVQVGIANFKSE
YSAAWNYMLAASTIVAIPTLVLFLVFQRQIMDSIKTSGLK
>Mature_279_residues
SKPSLYFSNSQVTAVRLIWMTVAAILALMTVFPLLWMVSIAFKGAQESFSPALLPSAPTWSNFVYVLTEVPFIRYMLNSL
FVSVTVTVVALFFHSMAGYALARLRFPGRELIFLAIFSTLLVSLPVVIVPLFIIVRAMGMLNTYGGIIIPSIFNAFGIFL
LRQYYLSLPREIEEAAVMDGAGYWRIYWSVILPLSKPILSALAILFFLANWNAFLWPLTVASDQKFWVVQVGIANFKSEY
SAAWNYMLAASTIVAIPTLVLFLVFQRQIMDSIKTSGLK

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=278, Percent_Identity=32.0143884892086, Blast_Score=129, Evalue=1e-31,
Organism=Escherichia coli, GI1789860, Length=208, Percent_Identity=33.6538461538462, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1790464, Length=270, Percent_Identity=26.2962962962963, Blast_Score=89, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31416; Mature: 31285

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKPSLYFSNSQVTAVRLIWMTVAAILALMTVFPLLWMVSIAFKGAQESFSPALLPSAPT
CCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCC
WSNFVYVLTEVPFIRYMLNSLFVSVTVTVVALFFHSMAGYALARLRFPGRELIFLAIFST
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
LLVSLPVVIVPLFIIVRAMGMLNTYGGIIIPSIFNAFGIFLLRQYYLSLPREIEEAAVMD
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC
GAGYWRIYWSVILPLSKPILSALAILFFLANWNAFLWPLTVASDQKFWVVQVGIANFKSE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCEEEEEEEHHHHHHH
YSAAWNYMLAASTIVAIPTLVLFLVFQRQIMDSIKTSGLK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SKPSLYFSNSQVTAVRLIWMTVAAILALMTVFPLLWMVSIAFKGAQESFSPALLPSAPT
CCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCC
WSNFVYVLTEVPFIRYMLNSLFVSVTVTVVALFFHSMAGYALARLRFPGRELIFLAIFST
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
LLVSLPVVIVPLFIIVRAMGMLNTYGGIIIPSIFNAFGIFLLRQYYLSLPREIEEAAVMD
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC
GAGYWRIYWSVILPLSKPILSALAILFFLANWNAFLWPLTVASDQKFWVVQVGIANFKSE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCEEEEEEEHHHHHHH
YSAAWNYMLAASTIVAIPTLVLFLVFQRQIMDSIKTSGLK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]