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The map label for this gene is ycjD [C]

Identifier: 150397501

GI number: 150397501

Start: 2379793

End: 2380233

Strand: Reverse

Name: ycjD [C]

Synonym: Smed_2301

Alternate gene names: 150397501

Gene position: 2380233-2379793 (Counterclockwise)

Preceding gene: 150397502

Following gene: 150397500

Centisome position: 62.94

GC content: 58.05

Gene sequence:

>441_bases
ATGAGGGGTGCGAACGAACGTCAGACAAAGCGCGCCAGACGCCTGCGGCAGGCGGACAACGATGCGGAAGCGCTCCTCTG
GTCGGAACTGCGAGGCCGGCATCTCAACGGCTTCAAGTTCGTCCGGCAGCTTCCGCTTGGCCCTTACTTTGCGGACTTTG
GGTGCCGTGATGAACGTTTGGTTGTCGAAGTCGACGGCAGCCAACATGCGAACAGAAGTAGCGATATCAGGCGGGACGAA
AACATGGTCGCAACTGGCTGGAGCGTGGTGCGCTTCTGGAACATGCAAATCTTCAATGACCGTCCATCGGTGCTGGAGAC
GATCGTGGCGTTTCTGGAGAAGCGCTTGCTTGGGGAAGTAAGGACAGCGGATTTGACGTCCATTCCGGCGAAGAGACAGT
TGGAGGCCGAAGCAGAGCAAATGAGGGCCATCGCCGTATGA

Upstream 100 bases:

>100_bases
ACCGTTGTGTTCAATCGCACCCGACAACGCGCCTACGGGATCTCGTCCCCTCTCCCCGCCTGCGGGGAGAGGGTTAGGGT
GAGGGGCAGCAGAGGTTAGC

Downstream 100 bases:

>100_bases
AGCGTCTTCTGGAAGCAGAGCTCATCTATGGACGGCTGCTGGACATTTTGGAGCCGCATCTTATTGCTCGCTACAACAAG
GCGCTGGAAGGATTCGGGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 146

Protein sequence:

>146_residues
MRGANERQTKRARRLRQADNDAEALLWSELRGRHLNGFKFVRQLPLGPYFADFGCRDERLVVEVDGSQHANRSSDIRRDE
NMVATGWSVVRFWNMQIFNDRPSVLETIVAFLEKRLLGEVRTADLTSIPAKRQLEAEAEQMRAIAV

Sequences:

>Translated_146_residues
MRGANERQTKRARRLRQADNDAEALLWSELRGRHLNGFKFVRQLPLGPYFADFGCRDERLVVEVDGSQHANRSSDIRRDE
NMVATGWSVVRFWNMQIFNDRPSVLETIVAFLEKRLLGEVRTADLTSIPAKRQLEAEAEQMRAIAV
>Mature_146_residues
MRGANERQTKRARRLRQADNDAEALLWSELRGRHLNGFKFVRQLPLGPYFADFGCRDERLVVEVDGSQHANRSSDIRRDE
NMVATGWSVVRFWNMQIFNDRPSVLETIVAFLEKRLLGEVRTADLTSIPAKRQLEAEAEQMRAIAV

Specific function: Unknown

COG id: COG2852

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ycjD and H.influenzae HI_0925 [H]

Homologues:

Organism=Escherichia coli, GI1787546, Length=105, Percent_Identity=43.8095238095238, Blast_Score=82, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007569
- InterPro:   IPR011335 [H]

Pfam domain/function: PF04480 DUF559 [H]

EC number: NA

Molecular weight: Translated: 16856; Mature: 16856

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGANERQTKRARRLRQADNDAEALLWSELRGRHLNGFKFVRQLPLGPYFADFGCRDERL
CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCEE
VVEVDGSQHANRSSDIRRDENMVATGWSVVRFWNMQIFNDRPSVLETIVAFLEKRLLGEV
EEEECCCCCCCCCCCCCCCCCEECCCHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHH
RTADLTSIPAKRQLEAEAEQMRAIAV
HHCCHHCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRGANERQTKRARRLRQADNDAEALLWSELRGRHLNGFKFVRQLPLGPYFADFGCRDERL
CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCEE
VVEVDGSQHANRSSDIRRDENMVATGWSVVRFWNMQIFNDRPSVLETIVAFLEKRLLGEV
EEEECCCCCCCCCCCCCCCCCEECCCHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHH
RTADLTSIPAKRQLEAEAEQMRAIAV
HHCCHHCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]