| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is fct [H]
Identifier: 150397393
GI number: 150397393
Start: 2268614
End: 2270788
Strand: Direct
Name: fct [H]
Synonym: Smed_2192
Alternate gene names: 150397393
Gene position: 2268614-2270788 (Clockwise)
Preceding gene: 150397392
Following gene: 150397394
Centisome position: 59.99
GC content: 58.48
Gene sequence:
>2175_bases ATGCCCCCCAGAACCGCCTCCCTATTGCCGCTCATTCGCGCGGCCCTCGCTGGAACCTCCGCCCTCGCCCTCGTAGCAAC GGCACAGGCACAGGACGTAGGGCAGGAATCCGTTTCCGACGACCAGTCGACTGACCTCGAAACATTGGTCGTCAATGGCA GCGGCGGGGTGATCACGGCGGAAGGCTATGTCGCAACCAGCAGCGCGACCGGCGCCAAGGTCGATACGCCGTTCCTGGAG ACGCCGCAATCGATCTCCACGGTCACCGAGCAGCAGCTGAAGGATCGAAATCCACAGACGCTGCTGGAAACGCTGGCCTA CACGCCGGGGACGCGCGTCGGCGCCTATGGCTTCGATCCACGCTTCGATGCATTTTTCGTACGCGGTTTCGACGTGACCT TTACCGGTGTGTTCCGTGACAACCTCCGCCAACCGGCCGCGGTCGACTCGGTCTTCAAGACTGAACCTTACGGGCTTGAA GGCGTCTCGATCCTGCGCGGCCCTTCCTCGGCCCTTTACGGCGCAACCGGCGCCGGAGGCCTTTACAACCTTATTACCAA GCGCCCGACGGAAGAAATGCTGCGGGAGGTGCAGGTTCAATATGGCAACCACGACCGCTATCAGGGCCAATTCGACTTTT CAGGTCCGGTGAACGAGACCGATCCCATCTATTACCGCCTGACTGGCTTGCTGCGCGATGCCGACACGGAGCAGGTCGGC CTCTCCGACGATCGCGCCTATATAGCGCCGGCCTTCACCTGGAAGCCCGACGAAGATACCAAGCTGACCGTACTTAGTGA ATATTCACGCACCAAGTCCGGAGGCACGGCGACTTACTACAATGACCCGCTTACCGGTGAAGTCACCGACATATTCGCCG GCAATCCCGACTTCAACGACTCGATCCAGAAGCAGGGTCGGATCGGCTATGAGTTTGAGCACCGGCTCAACGATACGTTC GTGTTCCGCCAAAACGCCCGCGTGTCTACTCTGAACATCGATGCGGACTGGGCCTTCGCCTACGCCCCGAATGCCGCGGA TCCGACCTTGCTCGACAGCAGCGCCGGCACCTATGACGAACGCCTGACCGCGTTCGTCATCGATAATCAGCTCGAAGCCA AATTCGATACCGGTGCGTTCGAGCATACGTTGGTCGCCGGCGTCGACTATACGAAGCTGCGTTTCCGGGCACTCGACGGG CGCGGCGTTTCGCCGCCGCTCGATACGAAGAATCCGACCAAGGGGCGTCCGGTCGAGGCGATTGATTTCGACACACGTAC CGTCCAGGATCAGTGGCAACTCGGTACATACCTCCAAGACCAGATCCGCTACGACGCATGGACCTTGACGATGGGCGGGC GCTACGACTGGGTCTCGACCGATACGGACACCACGGTTCTGGCCACCGACTCGCTAACCACGGTATCGCAAAAGGACAAG GAGTTCTCCGGCCGTATAGGGCTCACCTATCAGACGGATTTCGGTCTCGCGCCTTATATCAGCTACTCGACGGCATTCAT GCCCAATGCCGGTTTCAACAGGGCGACGAACCAGCCGTTCAAGCCTACCGAGAGCGAGCAGGAAGAAATCGGCATCAAGT ATCTCCTGCCGAACAGCAACACGCTGATTACGGCAGCTCTCTTCAACATCGATCAGAAGAATGGCCTGTATCTCGAAGCC GCCGGGGATACTGCAATCCAGGTTCAGCGCGGAAAACTGCGCTCGCGCGGTTTCGAGATCGAAGCGAATACCAGCCTTGA CAATGGTCTTTCGCTGATAGTTTCTTATGCATATACCGACGTGAAGATTATTCAAGGATCTACCGGTACGACTGGCAACC ATGTCTCATCCGCACCAAAGCACATGGCATCGATATGGGCCCATTATACACTGCCGGAAGGTGGTCCATTTTACGGATTC AGCCTAGGCGGCGGCGCGCGTTTCGTCGGCGCAAGCTACGGCAATGACCAGAACACCTTCAAGAATAGTTCGCGTATCCT CTTCGATGCTTCCGTCGGATACGACTTCGCAGCGATCGACCAGAAATATGAGGGCCTGCAGCTGCAAGTGAATGCCACCA ACCTGTTTGACCGCCGCGATGCGGTATGCACTGCGGGTTATTGCCATCGCGATCAGGGCCGCACCGTTATCGGCTCTCTG CGCTACAACTGGTAA
Upstream 100 bases:
>100_bases ATGATTAGGAAAGTCATGAAATCGGCTTGCGCTTCCTCTAATCATGAGTGATTAGCTCACCTTATAGAACATAACTTATA TCTCTATAAGGTTGCGTCGC
Downstream 100 bases:
>100_bases GCGTCATGGCAGCCGGTGCGCGTGAAAGCATGGCGGTATTCGACGGGCCGAAAGGACTGTCGGCGGCCTTTGCCGGACCG CATGCCTGGTGCAACGAGAA
Product: ferrioxamine B receptor protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 724; Mature: 723
Protein sequence:
>724_residues MPPRTASLLPLIRAALAGTSALALVATAQAQDVGQESVSDDQSTDLETLVVNGSGGVITAEGYVATSSATGAKVDTPFLE TPQSISTVTEQQLKDRNPQTLLETLAYTPGTRVGAYGFDPRFDAFFVRGFDVTFTGVFRDNLRQPAAVDSVFKTEPYGLE GVSILRGPSSALYGATGAGGLYNLITKRPTEEMLREVQVQYGNHDRYQGQFDFSGPVNETDPIYYRLTGLLRDADTEQVG LSDDRAYIAPAFTWKPDEDTKLTVLSEYSRTKSGGTATYYNDPLTGEVTDIFAGNPDFNDSIQKQGRIGYEFEHRLNDTF VFRQNARVSTLNIDADWAFAYAPNAADPTLLDSSAGTYDERLTAFVIDNQLEAKFDTGAFEHTLVAGVDYTKLRFRALDG RGVSPPLDTKNPTKGRPVEAIDFDTRTVQDQWQLGTYLQDQIRYDAWTLTMGGRYDWVSTDTDTTVLATDSLTTVSQKDK EFSGRIGLTYQTDFGLAPYISYSTAFMPNAGFNRATNQPFKPTESEQEEIGIKYLLPNSNTLITAALFNIDQKNGLYLEA AGDTAIQVQRGKLRSRGFEIEANTSLDNGLSLIVSYAYTDVKIIQGSTGTTGNHVSSAPKHMASIWAHYTLPEGGPFYGF SLGGGARFVGASYGNDQNTFKNSSRILFDASVGYDFAAIDQKYEGLQLQVNATNLFDRRDAVCTAGYCHRDQGRTVIGSL RYNW
Sequences:
>Translated_724_residues MPPRTASLLPLIRAALAGTSALALVATAQAQDVGQESVSDDQSTDLETLVVNGSGGVITAEGYVATSSATGAKVDTPFLE TPQSISTVTEQQLKDRNPQTLLETLAYTPGTRVGAYGFDPRFDAFFVRGFDVTFTGVFRDNLRQPAAVDSVFKTEPYGLE GVSILRGPSSALYGATGAGGLYNLITKRPTEEMLREVQVQYGNHDRYQGQFDFSGPVNETDPIYYRLTGLLRDADTEQVG LSDDRAYIAPAFTWKPDEDTKLTVLSEYSRTKSGGTATYYNDPLTGEVTDIFAGNPDFNDSIQKQGRIGYEFEHRLNDTF VFRQNARVSTLNIDADWAFAYAPNAADPTLLDSSAGTYDERLTAFVIDNQLEAKFDTGAFEHTLVAGVDYTKLRFRALDG RGVSPPLDTKNPTKGRPVEAIDFDTRTVQDQWQLGTYLQDQIRYDAWTLTMGGRYDWVSTDTDTTVLATDSLTTVSQKDK EFSGRIGLTYQTDFGLAPYISYSTAFMPNAGFNRATNQPFKPTESEQEEIGIKYLLPNSNTLITAALFNIDQKNGLYLEA AGDTAIQVQRGKLRSRGFEIEANTSLDNGLSLIVSYAYTDVKIIQGSTGTTGNHVSSAPKHMASIWAHYTLPEGGPFYGF SLGGGARFVGASYGNDQNTFKNSSRILFDASVGYDFAAIDQKYEGLQLQVNATNLFDRRDAVCTAGYCHRDQGRTVIGSL RYNW >Mature_723_residues PPRTASLLPLIRAALAGTSALALVATAQAQDVGQESVSDDQSTDLETLVVNGSGGVITAEGYVATSSATGAKVDTPFLET PQSISTVTEQQLKDRNPQTLLETLAYTPGTRVGAYGFDPRFDAFFVRGFDVTFTGVFRDNLRQPAAVDSVFKTEPYGLEG VSILRGPSSALYGATGAGGLYNLITKRPTEEMLREVQVQYGNHDRYQGQFDFSGPVNETDPIYYRLTGLLRDADTEQVGL SDDRAYIAPAFTWKPDEDTKLTVLSEYSRTKSGGTATYYNDPLTGEVTDIFAGNPDFNDSIQKQGRIGYEFEHRLNDTFV FRQNARVSTLNIDADWAFAYAPNAADPTLLDSSAGTYDERLTAFVIDNQLEAKFDTGAFEHTLVAGVDYTKLRFRALDGR GVSPPLDTKNPTKGRPVEAIDFDTRTVQDQWQLGTYLQDQIRYDAWTLTMGGRYDWVSTDTDTTVLATDSLTTVSQKDKE FSGRIGLTYQTDFGLAPYISYSTAFMPNAGFNRATNQPFKPTESEQEEIGIKYLLPNSNTLITAALFNIDQKNGLYLEAA GDTAIQVQRGKLRSRGFEIEANTSLDNGLSLIVSYAYTDVKIIQGSTGTTGNHVSSAPKHMASIWAHYTLPEGGPFYGFS LGGGARFVGASYGNDQNTFKNSSRILFDASVGYDFAAIDQKYEGLQLQVNATNLFDRRDAVCTAGYCHRDQGRTVIGSLR YNW
Specific function: Involved in the initial step of iron uptake by binding chrysobactin, an iron chelatin siderophore that allows the bacteria to extract iron from the environment [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1786344, Length=712, Percent_Identity=36.376404494382, Blast_Score=375, Evalue=1e-105, Organism=Escherichia coli, GI1787024, Length=734, Percent_Identity=23.1607629427793, Blast_Score=110, Evalue=4e-25, Organism=Escherichia coli, GI1788478, Length=166, Percent_Identity=28.3132530120482, Blast_Score=69, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 79380; Mature: 79249
Theoretical pI: Translated: 4.52; Mature: 4.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPPRTASLLPLIRAALAGTSALALVATAQAQDVGQESVSDDQSTDLETLVVNGSGGVITA CCCCHHHHHHHHHHHHCCCCEEEEEEEHHHHHCCHHHCCCCCCCCEEEEEEECCCCEEEE EGYVATSSATGAKVDTPFLETPQSISTVTEQQLKDRNPQTLLETLAYTPGTRVGAYGFDP CCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCC RFDAFFVRGFDVTFTGVFRDNLRQPAAVDSVFKTEPYGLEGVSILRGPSSALYGATGAGG CCCEEEEEECEEEEEEEEHHCCCCCHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCH LYNLITKRPTEEMLREVQVQYGNHDRYQGQFDFSGPVNETDPIYYRLTGLLRDADTEQVG HHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCEEEEEEEHHHCCCCCCCC LSDDRAYIAPAFTWKPDEDTKLTVLSEYSRTKSGGTATYYNDPLTGEVTDIFAGNPDFND CCCCCEEEEEEEECCCCCCCEEEEEEHHHCCCCCCEEEEECCCCCCCEEEEECCCCCCCH SIQKQGRIGYEFEHRLNDTFVFRQNARVSTLNIDADWAFAYAPNAADPTLLDSSAGTYDE HHHHCCCCCEEEHHCCCCEEEEECCCEEEEEEECCCEEEEECCCCCCCCEECCCCCCHHH RLTAFVIDNQLEAKFDTGAFEHTLVAGVDYTKLRFRALDGRGVSPPLDTKNPTKGRPVEA CEEEEEECCCCCCEECCCCCCEEEEECCCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEE IDFDTRTVQDQWQLGTYLQDQIRYDAWTLTMGGRYDWVSTDTDTTVLATDSLTTVSQKDK EECCCCCCHHHHHHHHHHHHHHCEEEEEEEECCEEEEECCCCCCEEEEECCEEEHHHCCC EFSGRIGLTYQTDFGLAPYISYSTAFMPNAGFNRATNQPFKPTESEQEEIGIKYLLPNSN CCCCEEEEEEECCCCCCCEECCCEEECCCCCCCCCCCCCCCCCCCHHHHCCEEEEECCCC TLITAALFNIDQKNGLYLEAAGDTAIQVQRGKLRSRGFEIEANTSLDNGLSLIVSYAYTD CEEEEEEEECCCCCCEEEEECCCCEEEEECCHHHHCCEEEEECCCCCCCCEEEEEEEECE VKIIQGSTGTTGNHVSSAPKHMASIWAHYTLPEGGPFYGFSLGGGARFVGASYGNDQNTF EEEEECCCCCCCCCCCHHHHHHHHHHHEEECCCCCCEEEEEECCCEEEEECCCCCCCHHC KNSSRILFDASVGYDFAAIDQKYEGLQLQVNATNLFDRRDAVCTAGYCHRDQGRTVIGSL CCCCEEEEEECCCCCCHHHCCCCCCEEEEEECCCCCCCCCCEEECCCEECCCCCEEEEEE RYNW EECC >Mature Secondary Structure PPRTASLLPLIRAALAGTSALALVATAQAQDVGQESVSDDQSTDLETLVVNGSGGVITA CCCHHHHHHHHHHHHCCCCEEEEEEEHHHHHCCHHHCCCCCCCCEEEEEEECCCCEEEE EGYVATSSATGAKVDTPFLETPQSISTVTEQQLKDRNPQTLLETLAYTPGTRVGAYGFDP CCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCC RFDAFFVRGFDVTFTGVFRDNLRQPAAVDSVFKTEPYGLEGVSILRGPSSALYGATGAGG CCCEEEEEECEEEEEEEEHHCCCCCHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCH LYNLITKRPTEEMLREVQVQYGNHDRYQGQFDFSGPVNETDPIYYRLTGLLRDADTEQVG HHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCEEEEEEEHHHCCCCCCCC LSDDRAYIAPAFTWKPDEDTKLTVLSEYSRTKSGGTATYYNDPLTGEVTDIFAGNPDFND CCCCCEEEEEEEECCCCCCCEEEEEEHHHCCCCCCEEEEECCCCCCCEEEEECCCCCCCH SIQKQGRIGYEFEHRLNDTFVFRQNARVSTLNIDADWAFAYAPNAADPTLLDSSAGTYDE HHHHCCCCCEEEHHCCCCEEEEECCCEEEEEEECCCEEEEECCCCCCCCEECCCCCCHHH RLTAFVIDNQLEAKFDTGAFEHTLVAGVDYTKLRFRALDGRGVSPPLDTKNPTKGRPVEA CEEEEEECCCCCCEECCCCCCEEEEECCCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEE IDFDTRTVQDQWQLGTYLQDQIRYDAWTLTMGGRYDWVSTDTDTTVLATDSLTTVSQKDK EECCCCCCHHHHHHHHHHHHHHCEEEEEEEECCEEEEECCCCCCEEEEECCEEEHHHCCC EFSGRIGLTYQTDFGLAPYISYSTAFMPNAGFNRATNQPFKPTESEQEEIGIKYLLPNSN CCCCEEEEEEECCCCCCCEECCCEEECCCCCCCCCCCCCCCCCCCHHHHCCEEEEECCCC TLITAALFNIDQKNGLYLEAAGDTAIQVQRGKLRSRGFEIEANTSLDNGLSLIVSYAYTD CEEEEEEEECCCCCCEEEEECCCCEEEEECCHHHHCCEEEEECCCCCCCCEEEEEEEECE VKIIQGSTGTTGNHVSSAPKHMASIWAHYTLPEGGPFYGFSLGGGARFVGASYGNDQNTF EEEEECCCCCCCCCCCHHHHHHHHHHHEEECCCCCCEEEEEECCCEEEEECCCCCCCHHC KNSSRILFDASVGYDFAAIDQKYEGLQLQVNATNLFDRRDAVCTAGYCHRDQGRTVIGSL CCCCEEEEEECCCCCCHHHCCCCCCEEEEEECCCCCCCCCCEEECCCEECCCCCEEEEEE RYNW EECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8576065 [H]