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The map label for this gene is yddQ [C]

Identifier: 150397381

GI number: 150397381

Start: 2253528

End: 2254355

Strand: Direct

Name: yddQ [C]

Synonym: Smed_2180

Alternate gene names: 150397381

Gene position: 2253528-2254355 (Clockwise)

Preceding gene: 150397380

Following gene: 150397382

Centisome position: 59.59

GC content: 62.68

Gene sequence:

>828_bases
ATGAACTTGAGAACCATACCCTTCAGTGCCTGGATCGGCATCATCGGCATTGCTATCGCAATTTTCTGCGCCCTCTTTGC
TCCCCTTCTCGCCCCCTTTGGCGAGCGCGAGGTGGTGGGCGATGTCTGGCTGCCGGCCGGCGGCGATTTCCTCCTCGGCA
CGGACAATCTCGGCCGCGACCTGCTCTCGCGTCTGATCTACGGCGCTCGAACGACGATCTTCGTCGCGCTGGCGGCAACC
GTGATATCCTTCGCTCTCGGTATGATCCTGAGCTTCACCGCGGCCGTCACCGGCGGCTTCGTCGATCAATTTTTCTCCCG
CTTCAACGACCTGATGATGGCGGTGCCGACGCTGATTTTCGCACTCGTCGTTCTCGCAGTGCTGCCGCAGCATCTGTGGA
TCCTCGTCCTCGTCATGGCCGTGCTCGATTCGACCCGTGTCTTCCGCATCGGCCGCGCCGTCGCACTCGATGTCGCGGTC
ATGGAGTTCGTCGAGGCTGCGCGACTGCGCGGCGAAGGCACTGTCTGGATCATTTTCCGGGAGATCCTGCCGAACACGCT
GTCGCCACTCCTCGCCGAGTTCGGTCTGCGCTTCGCCTTCTCGATCCTGTTCCTCTCCACCCTCTCCTTCCTCGGCCTCG
GCATTCAACCGCCGGCCGCCGATTGGGGCGGCATGGTCAAGGACAACAAGGACGGCATCATCTTCGGCATATCGGCCGCA
CTCATCCCTGGCGGCGCGATCGCGGCCCTCGCAATCTGCGTCAATCTCGTCGTCGACTGGCTGATGAAGCGCACCTCCAG
CCTGAAAGGAGGCCGCGGCGATGCCTGA

Upstream 100 bases:

>100_bases
TGCAGGCATGCGGGCTGATCTTTGCGGCCTTCTATATCTTCCTCAACATGGCGGCAGACATTCTCGCCATTCTCGCCAAT
CCGAGATTGAGGCATCCGCG

Downstream 100 bases:

>100_bases
TCTGCTTTCCGTCAAGAACCTGAAGATCGAGGCGACGAGCTATCCCCCGGGCGAGCCGCCGAAGGTCGTCACGCTGGTCG
AGGGCGTTTCCTTCGACCTC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MNLRTIPFSAWIGIIGIAIAIFCALFAPLLAPFGEREVVGDVWLPAGGDFLLGTDNLGRDLLSRLIYGARTTIFVALAAT
VISFALGMILSFTAAVTGGFVDQFFSRFNDLMMAVPTLIFALVVLAVLPQHLWILVLVMAVLDSTRVFRIGRAVALDVAV
MEFVEAARLRGEGTVWIIFREILPNTLSPLLAEFGLRFAFSILFLSTLSFLGLGIQPPAADWGGMVKDNKDGIIFGISAA
LIPGGAIAALAICVNLVVDWLMKRTSSLKGGRGDA

Sequences:

>Translated_275_residues
MNLRTIPFSAWIGIIGIAIAIFCALFAPLLAPFGEREVVGDVWLPAGGDFLLGTDNLGRDLLSRLIYGARTTIFVALAAT
VISFALGMILSFTAAVTGGFVDQFFSRFNDLMMAVPTLIFALVVLAVLPQHLWILVLVMAVLDSTRVFRIGRAVALDVAV
MEFVEAARLRGEGTVWIIFREILPNTLSPLLAEFGLRFAFSILFLSTLSFLGLGIQPPAADWGGMVKDNKDGIIFGISAA
LIPGGAIAALAICVNLVVDWLMKRTSSLKGGRGDA
>Mature_275_residues
MNLRTIPFSAWIGIIGIAIAIFCALFAPLLAPFGEREVVGDVWLPAGGDFLLGTDNLGRDLLSRLIYGARTTIFVALAAT
VISFALGMILSFTAAVTGGFVDQFFSRFNDLMMAVPTLIFALVVLAVLPQHLWILVLVMAVLDSTRVFRIGRAVALDVAV
MEFVEAARLRGEGTVWIIFREILPNTLSPLLAEFGLRFAFSILFLSTLSFLGLGIQPPAADWGGMVKDNKDGIIFGISAA
LIPGGAIAALAICVNLVVDWLMKRTSSLKGGRGDA

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=257, Percent_Identity=30.3501945525292, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1787054, Length=241, Percent_Identity=30.7053941908714, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1787549, Length=259, Percent_Identity=32.046332046332, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1789964, Length=215, Percent_Identity=38.6046511627907, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1789889, Length=216, Percent_Identity=31.0185185185185, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787498, Length=252, Percent_Identity=29.7619047619048, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1788505, Length=200, Percent_Identity=28, Blast_Score=75, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 29461; Mature: 29461

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLRTIPFSAWIGIIGIAIAIFCALFAPLLAPFGEREVVGDVWLPAGGDFLLGTDNLGRD
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCEECCCCCCEEECCCHHHHH
LLSRLIYGARTTIFVALAATVISFALGMILSFTAAVTGGFVDQFFSRFNDLMMAVPTLIF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALVVLAVLPQHLWILVLVMAVLDSTRVFRIGRAVALDVAVMEFVEAARLRGEGTVWIIFR
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEH
EILPNTLSPLLAEFGLRFAFSILFLSTLSFLGLGIQPPAADWGGMVKDNKDGIIFGISAA
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEHHHH
LIPGGAIAALAICVNLVVDWLMKRTSSLKGGRGDA
HCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MNLRTIPFSAWIGIIGIAIAIFCALFAPLLAPFGEREVVGDVWLPAGGDFLLGTDNLGRD
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCEECCCCCCEEECCCHHHHH
LLSRLIYGARTTIFVALAATVISFALGMILSFTAAVTGGFVDQFFSRFNDLMMAVPTLIF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALVVLAVLPQHLWILVLVMAVLDSTRVFRIGRAVALDVAVMEFVEAARLRGEGTVWIIFR
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEH
EILPNTLSPLLAEFGLRFAFSILFLSTLSFLGLGIQPPAADWGGMVKDNKDGIIFGISAA
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEHHHH
LIPGGAIAALAICVNLVVDWLMKRTSSLKGGRGDA
HCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA