| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is 150397365
Identifier: 150397365
GI number: 150397365
Start: 2233979
End: 2235424
Strand: Reverse
Name: 150397365
Synonym: Smed_2164
Alternate gene names: NA
Gene position: 2235424-2233979 (Counterclockwise)
Preceding gene: 150397366
Following gene: 150397364
Centisome position: 59.11
GC content: 60.3
Gene sequence:
>1446_bases ATGTACGAGAAGGAGAAAGACCTCATTGGCGCATTCCTGCGCGGAGAGGTGGACCGTCGCGGCCTGTTGAAGGGCCTTGG CGCGGCAGGCCTGACGGCGGGCACCGCCGGCACCCTGTTCAACATGATGTCGACCCAGGCCCTTGCTGCCGACTTCGACT GGAAGGCACATTCCGGCAAGTCGCTGAAACTGTTGCTGAACAAGCATCCTTACGCGGATGCGATGATTGCCAATCTGCAG GCGTTCAAGGACCTTACCGGTATCGAAGTCACCTATGACGTCTTCCCGGAGGACGTCTATTTCGACAAGGTGACGGCGGC GCTTTCTTCCGGCTCGTCGGAATACGACGCCTTCATGACCGGCGCTTACATGACCTGGACCTACGGGCCGGCCGGCTGGA TCACCGACCTCAATGAATGGATCAAAGATCCGTCGAAGACCAATCCGCAATATGGCTGGGACGACTTCCTGCCGGGCGTC AAGGCATCCTGCGCCTGGAACGGTCAGCCGGGCGGCGCGCTCGGTTCGGAAGATGCCAAGCAGTGGTGCATTCCGTGGGG CTACGAGCAGAACAATCTCTCCTATAACCAGGAAATGTTCGAAAAGGCCGGCGCCAGCGTTCCGAAGAACCTCGATGAAC TCGTCGCTACGGCGGCAAAGCTCAACAAGGATGTCGGCGGCGGTGTCTACGGCATCGGCGTGCGTGGTTCCCGTTCCTGG GCAACCATTCATCCGGGTTTCCTCTCCGGCTACGCCAATTTCGGCCAGAAGGATCTGAACGTCTCGGAGGACGGCAAGCT TTCGGCCGCGATGAACACGGCGGAGTCCAAGTCCTTCCACGCCAAATGGGTGCAGATGATCCAGGAAAGCGGCCCCAAGG ACTGGTCGACCTATACCTGGTATCAGGTCGGCACCGACCTCGGCGCCGGCGCTTCCGCCATGATCTACGACGCCGACATC CTCGGCTATTTCATGAATGGCGGCGACAACAAGATGGCCGGCAAGCTCGCTTACGCGCCCTTTGCCGCCAACCCTGAGGC GAAGGCTCCTACGCCGAACATCTGGATCTGGTCGCTGGCCATGTCCAATTTCGCGAAGGATAAGGATGCGACCTGGTATT TCCTGCAATGGGCATCGGGTCTCGAGCACGCGATCTTCGGCGCAACCAAGATGGACTTCGTCAACCCGGTCCGGGCATCC GTCTGGAAGGACGAGATCTTCCGGGAGCGGCTGAACAAGAGCTATCCCGGTTATGTGGAGATGCACGACGTTTCGGCGCC GGGCGCGAAGATCCACTTCACCGCCCAGCCTCTCTTCTTCGATCTCACCACCGAATGGGCGGCGACGCTGCAGAAGATGG TGGCGAAGGAAGTGCCGGTCGACGAAGGTCTCGACAGGCTTGCCGAGAGCATCAACCGGCAACTTGCGGAAGCCGGGCTC GGCTGA
Upstream 100 bases:
>100_bases CGCGATGCGACGAAAGTCGGCGTGCGGTCCGGTAGGCAATACCGGTTGGGTAGCCGGCAGCTCAGTCGAGCAGTTTTACC CGTAGTGGAGGAGAGAACAG
Downstream 100 bases:
>100_bases TCGCACTTCCGGCTTGGAGCGGAAGCGGGCGAACATCGGACGTCCGCATCCGGCTCCAGGCCAGCCCGTCACCGGCGGGC CGCCGTTTCGGCACGAAAAA
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: ABC Sugar Transporter; Sugar ABC Transporter
Number of amino acids: Translated: 481; Mature: 481
Protein sequence:
>481_residues MYEKEKDLIGAFLRGEVDRRGLLKGLGAAGLTAGTAGTLFNMMSTQALAADFDWKAHSGKSLKLLLNKHPYADAMIANLQ AFKDLTGIEVTYDVFPEDVYFDKVTAALSSGSSEYDAFMTGAYMTWTYGPAGWITDLNEWIKDPSKTNPQYGWDDFLPGV KASCAWNGQPGGALGSEDAKQWCIPWGYEQNNLSYNQEMFEKAGASVPKNLDELVATAAKLNKDVGGGVYGIGVRGSRSW ATIHPGFLSGYANFGQKDLNVSEDGKLSAAMNTAESKSFHAKWVQMIQESGPKDWSTYTWYQVGTDLGAGASAMIYDADI LGYFMNGGDNKMAGKLAYAPFAANPEAKAPTPNIWIWSLAMSNFAKDKDATWYFLQWASGLEHAIFGATKMDFVNPVRAS VWKDEIFRERLNKSYPGYVEMHDVSAPGAKIHFTAQPLFFDLTTEWAATLQKMVAKEVPVDEGLDRLAESINRQLAEAGL G
Sequences:
>Translated_481_residues MYEKEKDLIGAFLRGEVDRRGLLKGLGAAGLTAGTAGTLFNMMSTQALAADFDWKAHSGKSLKLLLNKHPYADAMIANLQ AFKDLTGIEVTYDVFPEDVYFDKVTAALSSGSSEYDAFMTGAYMTWTYGPAGWITDLNEWIKDPSKTNPQYGWDDFLPGV KASCAWNGQPGGALGSEDAKQWCIPWGYEQNNLSYNQEMFEKAGASVPKNLDELVATAAKLNKDVGGGVYGIGVRGSRSW ATIHPGFLSGYANFGQKDLNVSEDGKLSAAMNTAESKSFHAKWVQMIQESGPKDWSTYTWYQVGTDLGAGASAMIYDADI LGYFMNGGDNKMAGKLAYAPFAANPEAKAPTPNIWIWSLAMSNFAKDKDATWYFLQWASGLEHAIFGATKMDFVNPVRAS VWKDEIFRERLNKSYPGYVEMHDVSAPGAKIHFTAQPLFFDLTTEWAATLQKMVAKEVPVDEGLDRLAESINRQLAEAGL G >Mature_481_residues MYEKEKDLIGAFLRGEVDRRGLLKGLGAAGLTAGTAGTLFNMMSTQALAADFDWKAHSGKSLKLLLNKHPYADAMIANLQ AFKDLTGIEVTYDVFPEDVYFDKVTAALSSGSSEYDAFMTGAYMTWTYGPAGWITDLNEWIKDPSKTNPQYGWDDFLPGV KASCAWNGQPGGALGSEDAKQWCIPWGYEQNNLSYNQEMFEKAGASVPKNLDELVATAAKLNKDVGGGVYGIGVRGSRSW ATIHPGFLSGYANFGQKDLNVSEDGKLSAAMNTAESKSFHAKWVQMIQESGPKDWSTYTWYQVGTDLGAGASAMIYDADI LGYFMNGGDNKMAGKLAYAPFAANPEAKAPTPNIWIWSLAMSNFAKDKDATWYFLQWASGLEHAIFGATKMDFVNPVRAS VWKDEIFRERLNKSYPGYVEMHDVSAPGAKIHFTAQPLFFDLTTEWAATLQKMVAKEVPVDEGLDRLAESINRQLAEAGL G
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52731; Mature: 52731
Theoretical pI: Translated: 4.84; Mature: 4.84
Prosite motif: PS00107 PROTEIN_KINASE_ATP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYEKEKDLIGAFLRGEVDRRGLLKGLGAAGLTAGTAGTLFNMMSTQALAADFDWKAHSGK CCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC SLKLLLNKHPYADAMIANLQAFKDLTGIEVTYDVFPEDVYFDKVTAALSSGSSEYDAFMT EEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCHHHHHEE GAYMTWTYGPAGWITDLNEWIKDPSKTNPQYGWDDFLPGVKASCAWNGQPGGALGSEDAK CCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCC QWCIPWGYEQNNLSYNQEMFEKAGASVPKNLDELVATAAKLNKDVGGGVYGIGVRGSRSW CCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCE ATIHPGFLSGYANFGQKDLNVSEDGKLSAAMNTAESKSFHAKWVQMIQESGPKDWSTYTW EEECCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCEEE YQVGTDLGAGASAMIYDADILGYFMNGGDNKMAGKLAYAPFAANPEAKAPTPNIWIWSLA EEECCCCCCCCCEEEEEHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEH MSNFAKDKDATWYFLQWASGLEHAIFGATKMDFVNPVRASVWKDEIFRERLNKSYPGYVE HHHHCCCCCCCEEEEEECCCCHHHHHCCHHHHHHCHHHHHHHHHHHHHHHHCCCCCCEEE MHDVSAPGAKIHFTAQPLFFDLTTEWAATLQKMVAKEVPVDEGLDRLAESINRQLAEAGL EEECCCCCCEEEEEECCEEEECHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC G C >Mature Secondary Structure MYEKEKDLIGAFLRGEVDRRGLLKGLGAAGLTAGTAGTLFNMMSTQALAADFDWKAHSGK CCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC SLKLLLNKHPYADAMIANLQAFKDLTGIEVTYDVFPEDVYFDKVTAALSSGSSEYDAFMT EEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCHHHHHEE GAYMTWTYGPAGWITDLNEWIKDPSKTNPQYGWDDFLPGVKASCAWNGQPGGALGSEDAK CCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCC QWCIPWGYEQNNLSYNQEMFEKAGASVPKNLDELVATAAKLNKDVGGGVYGIGVRGSRSW CCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCE ATIHPGFLSGYANFGQKDLNVSEDGKLSAAMNTAESKSFHAKWVQMIQESGPKDWSTYTW EEECCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCEEE YQVGTDLGAGASAMIYDADILGYFMNGGDNKMAGKLAYAPFAANPEAKAPTPNIWIWSLA EEECCCCCCCCCEEEEEHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEH MSNFAKDKDATWYFLQWASGLEHAIFGATKMDFVNPVRASVWKDEIFRERLNKSYPGYVE HHHHCCCCCCCEEEEEECCCCHHHHHCCHHHHHHCHHHHHHHHHHHHHHHHCCCCCCEEE MHDVSAPGAKIHFTAQPLFFDLTTEWAATLQKMVAKEVPVDEGLDRLAESINRQLAEAGL EEECCCCCCEEEEEECCEEEECHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC G C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA