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The map label for this gene is ybfI [H]

Identifier: 150397340

GI number: 150397340

Start: 2205851

End: 2206735

Strand: Direct

Name: ybfI [H]

Synonym: Smed_2139

Alternate gene names: 150397340

Gene position: 2205851-2206735 (Clockwise)

Preceding gene: 150397339

Following gene: 150397341

Centisome position: 58.33

GC content: 61.69

Gene sequence:

>885_bases
ATGACGTTTCAGCCGCGCATGCAGAACCGGATCAGCGGATTTTCGATCATCGGCGGCCTCAACCGCCGGGAATGGAACGG
TGTGGTTGCGGATGTCTGGGACGTGGAATGCGTTCCGCATGCGGGCGGCTACTACATAGCCGAGGATCCCCGCATGTTCA
TCGTGCTCGACGCGAAAGGCGGCGGCAATTGCCGGGTGAAGCTCGCCGCCAACGGCGAGGGCGCGGTCCAGAATTATCAT
CGGCATGCCCTGTCCTATATCCCCGCGGGGATGGAACTATGGACCGACCTCGTCGACATCAACTACATCCGGCATCTCGA
TCTGCATTTCGATATCGATGCGCTCGGGCGGCGTCTCAGGGAAGATCTGGATCCCGCTGCCGTCGACACGCCGCGGCTCA
TGTTCCAGGATGAGCGCTTCCTGAGGCTTGCCGGGCTGATCGCAGCCGAATGCCTCAACCCCCAGCCTCTCCATGATCTT
TATGGCGACGGACTGACGGTGGCTCTGTTCATCGACCTCATGAAGATCGCAAAGCGCAGCGGCCGCAAGCGCAGCCAGCT
TGCGGCCTGGCAGTTGCGCCGGGCGGTCGATTTCATCGAGGAGAACTTCGCCCGCAATGTGCGGCTCGAGGAACTCGCCG
ACCTCACCGGCCTGTCGCAATCGCATTTCAGCCATGCCTTCAAGGCTTCGACGGGTGTCGCCCCGCATCAATGGCACATG
AACGCCCGTGTCGAACGGGCAAAACAGATGCTGGTCGAGAGCGAGGGCCCGCTGACCTCGATAGCCGCGGAAACGGGCTT
TGCCGATCAGGCGCATTTCACCCGCGTCTTTCGCAAGACGGTCGGCACGACGCCGGCACTATGGAAGAAAAGTCACACCG
CCTGA

Upstream 100 bases:

>100_bases
GATTGAAACGCCGCGCGATCGGCGATAGATAAACTTCACCTTCAACCGAAGGATTACTGCGGTCGAGCCCCGTGAGTTGG
CGCGATCGGTGAAGACGACG

Downstream 100 bases:

>100_bases
CACTTGGCCGGCTGCGCTCAATTTTACCCAGAATCGTTCAATTTCCGCGCATCCGGACAATCCCGGTCAAAATAGTTGAT
CTAGACACTCAGCTTATCAT

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 293

Protein sequence:

>294_residues
MTFQPRMQNRISGFSIIGGLNRREWNGVVADVWDVECVPHAGGYYIAEDPRMFIVLDAKGGGNCRVKLAANGEGAVQNYH
RHALSYIPAGMELWTDLVDINYIRHLDLHFDIDALGRRLREDLDPAAVDTPRLMFQDERFLRLAGLIAAECLNPQPLHDL
YGDGLTVALFIDLMKIAKRSGRKRSQLAAWQLRRAVDFIEENFARNVRLEELADLTGLSQSHFSHAFKASTGVAPHQWHM
NARVERAKQMLVESEGPLTSIAAETGFADQAHFTRVFRKTVGTTPALWKKSHTA

Sequences:

>Translated_294_residues
MTFQPRMQNRISGFSIIGGLNRREWNGVVADVWDVECVPHAGGYYIAEDPRMFIVLDAKGGGNCRVKLAANGEGAVQNYH
RHALSYIPAGMELWTDLVDINYIRHLDLHFDIDALGRRLREDLDPAAVDTPRLMFQDERFLRLAGLIAAECLNPQPLHDL
YGDGLTVALFIDLMKIAKRSGRKRSQLAAWQLRRAVDFIEENFARNVRLEELADLTGLSQSHFSHAFKASTGVAPHQWHM
NARVERAKQMLVESEGPLTSIAAETGFADQAHFTRVFRKTVGTTPALWKKSHTA
>Mature_293_residues
TFQPRMQNRISGFSIIGGLNRREWNGVVADVWDVECVPHAGGYYIAEDPRMFIVLDAKGGGNCRVKLAANGEGAVQNYHR
HALSYIPAGMELWTDLVDINYIRHLDLHFDIDALGRRLREDLDPAAVDTPRLMFQDERFLRLAGLIAAECLNPQPLHDLY
GDGLTVALFIDLMKIAKRSGRKRSQLAAWQLRRAVDFIEENFARNVRLEELADLTGLSQSHFSHAFKASTGVAPHQWHMN
ARVERAKQMLVESEGPLTSIAAETGFADQAHFTRVFRKTVGTTPALWKKSHTA

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786251, Length=97, Percent_Identity=30.9278350515464, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33075; Mature: 32944

Theoretical pI: Translated: 7.76; Mature: 7.76

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFQPRMQNRISGFSIIGGLNRREWNGVVADVWDVECVPHAGGYYIAEDPRMFIVLDAKG
CCCCCHHHHHCCCCCEECCCCCCCCCCEEEEEECCEEEECCCCEEEECCCEEEEEEECCC
GGNCRVKLAANGEGAVQNYHRHALSYIPAGMELWTDLVDINYIRHLDLHFDIDALGRRLR
CCCEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHEEEEEEECHHHHHHHHH
EDLDPAAVDTPRLMFQDERFLRLAGLIAAECLNPQPLHDLYGDGLTVALFIDLMKIAKRS
HHCCCCCCCCCHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHC
GRKRSQLAAWQLRRAVDFIEENFARNVRLEELADLTGLSQSHFSHAFKASTGVAPHQWHM
CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHH
NARVERAKQMLVESEGPLTSIAAETGFADQAHFTRVFRKTVGTTPALWKKSHTA
HHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHCCCCCC
>Mature Secondary Structure 
TFQPRMQNRISGFSIIGGLNRREWNGVVADVWDVECVPHAGGYYIAEDPRMFIVLDAKG
CCCCHHHHHCCCCCEECCCCCCCCCCEEEEEECCEEEECCCCEEEECCCEEEEEEECCC
GGNCRVKLAANGEGAVQNYHRHALSYIPAGMELWTDLVDINYIRHLDLHFDIDALGRRLR
CCCEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHEEEEEEECHHHHHHHHH
EDLDPAAVDTPRLMFQDERFLRLAGLIAAECLNPQPLHDLYGDGLTVALFIDLMKIAKRS
HHCCCCCCCCCHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHC
GRKRSQLAAWQLRRAVDFIEENFARNVRLEELADLTGLSQSHFSHAFKASTGVAPHQWHM
CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHH
NARVERAKQMLVESEGPLTSIAAETGFADQAHFTRVFRKTVGTTPALWKKSHTA
HHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]