Click here to switch to the map view.

The map label for this gene is ycjJ [C]

Identifier: 150397332

GI number: 150397332

Start: 2197238

End: 2198785

Strand: Reverse

Name: ycjJ [C]

Synonym: Smed_2131

Alternate gene names: 150397332

Gene position: 2198785-2197238 (Counterclockwise)

Preceding gene: 150397333

Following gene: 150397331

Centisome position: 58.14

GC content: 60.4

Gene sequence:

>1548_bases
ATGTCAGACTACTCGGAAATCGACAAGAAGCAGGACCTGCAGGTCCTGCATTCAATGGGCTACGCCCAGGAACTCGAACG
GCGAATGAGTCAATTCTCGAATTTCGCCGTATCCTTCTCGATCATTTGCATCCTGTCGGGCGGCATCAACTCGCTCGCAC
AGGCAACGTCCGGCGCCGGTGGCGCCGCGATCGGCATCGGGTGGCCGCTCGGATGCTTTATCTCGTTCGTCTTCGCGGTC
GCCATGGCCCAAATCAGTTCCGCCTATCCGACCGCGGGCGGCCTCTATCACTGGGGTTCGATTCTGGGCAACCGCTTCAC
CGGCTGGCTGACCGCATGGTTTAACCTGCTCGGTCTGGTCACCGTGCTCGGCGCGATCAACGTCGGCACCTACTACTTCT
TCATGGGCTCGTTCGGAACGCCCTATTTCGGTCTGGAAGACACGACGGGGACCCGGATCGTCTTCCTGGCGATCATCACA
GGCGCGCAGGCGCTCGTGAATCATATGGGCATCGCGCTTACGGCGAAGCTCACCGATTTTTCGGGCTATCTGATCTTCGT
CACCGCGATCCTGCTGGCGATCGTCTGCCTCGCCGTTGCGGACACTTACGAGATCGGCCGGCTATTCACCTTCTCGAATT
ACTCGGGAGAAGCCGGCGGCAATGTCTGGCCCCAGACCTCGGCTACCTGGGTGTTCCTGCTCGGTTTGCTGCTGCCGATC
TACACGATCACGGGCTACGACGCCTCGGCCCATACTTCGGAAGAAACGGTAAAGGCCGCTCACTCCGTTCCGCGCGGAAT
GATCTCGTCGGTGCTCTGGGCCGCGCTCTTCGGCTACATCATGCTTTGCGCCTTCGTGTTGATGATCCCTGATATGGACG
AGGCAGCGAAACAGGGCTGGAACGTGTTCTTCTGGGCGATGGACGCGCAGGTGAATCCCATCGTCAGAGACATCCTCTAC
CTGGCGATCCTGGTCAGCCAGTGGCTTTGCGGTCTGGCGACGGTAACCTCGGTCTCCCGTATGATCTTCGCCTTCTCGCG
TGACGGTGGTCTGCCGGCATCGAAGGCACTCTCGAAGGTGAGCCCGACCTATCGCACGCCGGTCGCGGCCATCTGGACCG
GCTCCATTCTCGCGGTGCTTTTCGTCTGGGGATCGTCGCTGGTCTCGATCGGCGACACGCCCGTTTATACGATTGTCGTT
TCCTGCACCGTCATCTTCCTCTTCTTCTCCTTTGCGATTCCGATCACGCTAGGTCTGATCGCCTGGGGAACCTCGAAGTG
GGACAAGATGGGGCCGTGGGACCTGGGCGAGGGCATGTTCAAGCTCTTCGCGGTGCTTTCGATCGTTGCCATGGTGCTGA
TCTTCGTTCTCGGCATTCAGCCGCCGAACGACTGGGCGCTCTACATCACGGTCGGCTTCCTGATCGTGACGGGCATCATC
TGGTTCGCCTTTGAAAAGCGACGGTTCCGTGGACCGCCAATCGGCGACGAGGTCGCGCGCCGTCAGGCGGAGATCGCCGC
TGCCGAAAGGGCGGTCGGCGAAGCGTAA

Upstream 100 bases:

>100_bases
CGGGGAGCGGCAATGCCGCGGTGTCGCTCCGGTGTTCCGGAGCAGGGGTGACGCGATCTCCGCAATAGCGCGGAAGGTCT
TGGAGAAACAGGGGAACGGC

Downstream 100 bases:

>100_bases
GCAGTAGAGGAGAGTGGGATCGCGCGCGGTCCCACTCCGCTTCGCGGTACGAGGGAACGACCGCACCTAAACATGGGACG
ACACTTTCATGAGCTATTCG

Product: amino acid permease-associated protein

Products: NA

Alternate protein names: Amino Acid Permease; Amino Acid/Metabolite Permease; Amino Acid Transporter; Amino-Acid Permease; Amino Acid Transporter Protein; Amino Acid Permease Family Protein; Amino Acid Transporter-Like Protein; Amino Acid Permease APC Family; Permease Urea Carboxylase System; Amino Acid Permease Protein; Permease Protein

Number of amino acids: Translated: 515; Mature: 514

Protein sequence:

>515_residues
MSDYSEIDKKQDLQVLHSMGYAQELERRMSQFSNFAVSFSIICILSGGINSLAQATSGAGGAAIGIGWPLGCFISFVFAV
AMAQISSAYPTAGGLYHWGSILGNRFTGWLTAWFNLLGLVTVLGAINVGTYYFFMGSFGTPYFGLEDTTGTRIVFLAIIT
GAQALVNHMGIALTAKLTDFSGYLIFVTAILLAIVCLAVADTYEIGRLFTFSNYSGEAGGNVWPQTSATWVFLLGLLLPI
YTITGYDASAHTSEETVKAAHSVPRGMISSVLWAALFGYIMLCAFVLMIPDMDEAAKQGWNVFFWAMDAQVNPIVRDILY
LAILVSQWLCGLATVTSVSRMIFAFSRDGGLPASKALSKVSPTYRTPVAAIWTGSILAVLFVWGSSLVSIGDTPVYTIVV
SCTVIFLFFSFAIPITLGLIAWGTSKWDKMGPWDLGEGMFKLFAVLSIVAMVLIFVLGIQPPNDWALYITVGFLIVTGII
WFAFEKRRFRGPPIGDEVARRQAEIAAAERAVGEA

Sequences:

>Translated_515_residues
MSDYSEIDKKQDLQVLHSMGYAQELERRMSQFSNFAVSFSIICILSGGINSLAQATSGAGGAAIGIGWPLGCFISFVFAV
AMAQISSAYPTAGGLYHWGSILGNRFTGWLTAWFNLLGLVTVLGAINVGTYYFFMGSFGTPYFGLEDTTGTRIVFLAIIT
GAQALVNHMGIALTAKLTDFSGYLIFVTAILLAIVCLAVADTYEIGRLFTFSNYSGEAGGNVWPQTSATWVFLLGLLLPI
YTITGYDASAHTSEETVKAAHSVPRGMISSVLWAALFGYIMLCAFVLMIPDMDEAAKQGWNVFFWAMDAQVNPIVRDILY
LAILVSQWLCGLATVTSVSRMIFAFSRDGGLPASKALSKVSPTYRTPVAAIWTGSILAVLFVWGSSLVSIGDTPVYTIVV
SCTVIFLFFSFAIPITLGLIAWGTSKWDKMGPWDLGEGMFKLFAVLSIVAMVLIFVLGIQPPNDWALYITVGFLIVTGII
WFAFEKRRFRGPPIGDEVARRQAEIAAAERAVGEA
>Mature_514_residues
SDYSEIDKKQDLQVLHSMGYAQELERRMSQFSNFAVSFSIICILSGGINSLAQATSGAGGAAIGIGWPLGCFISFVFAVA
MAQISSAYPTAGGLYHWGSILGNRFTGWLTAWFNLLGLVTVLGAINVGTYYFFMGSFGTPYFGLEDTTGTRIVFLAIITG
AQALVNHMGIALTAKLTDFSGYLIFVTAILLAIVCLAVADTYEIGRLFTFSNYSGEAGGNVWPQTSATWVFLLGLLLPIY
TITGYDASAHTSEETVKAAHSVPRGMISSVLWAALFGYIMLCAFVLMIPDMDEAAKQGWNVFFWAMDAQVNPIVRDILYL
AILVSQWLCGLATVTSVSRMIFAFSRDGGLPASKALSKVSPTYRTPVAAIWTGSILAVLFVWGSSLVSIGDTPVYTIVVS
CTVIFLFFSFAIPITLGLIAWGTSKWDKMGPWDLGEGMFKLFAVLSIVAMVLIFVLGIQPPNDWALYITVGFLIVTGIIW
FAFEKRRFRGPPIGDEVARRQAEIAAAERAVGEA

Specific function: Probable Amino-Acid Or Metabolite Transport Protein. [C]

COG id: COG0531

COG function: function code E; Amino acid transporters

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Saccharomyces cerevisiae, GI6319991, Length=381, Percent_Identity=29.3963254593176, Blast_Score=114, Evalue=3e-26,
Organism=Saccharomyces cerevisiae, GI6321361, Length=514, Percent_Identity=20.6225680933852, Blast_Score=67, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 55779; Mature: 55647

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDYSEIDKKQDLQVLHSMGYAQELERRMSQFSNFAVSFSIICILSGGINSLAQATSGAG
CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHCCCCC
GAAIGIGWPLGCFISFVFAVAMAQISSAYPTAGGLYHWGSILGNRFTGWLTAWFNLLGLV
CCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
TVLGAINVGTYYFFMGSFGTPYFGLEDTTGTRIVFLAIITGAQALVNHMGIALTAKLTDF
HHHHHHHHHHHHEEECCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHCCEEEEEEECCC
SGYLIFVTAILLAIVCLAVADTYEIGRLFTFSNYSGEAGGNVWPQTSATWVFLLGLLLPI
CCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHH
YTITGYDASAHTSEETVKAAHSVPRGMISSVLWAALFGYIMLCAFVLMIPDMDEAAKQGW
HHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCC
NVFFWAMDAQVNPIVRDILYLAILVSQWLCGLATVTSVSRMIFAFSRDGGLPASKALSKV
EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHC
SPTYRTPVAAIWTGSILAVLFVWGSSLVSIGDTPVYTIVVSCTVIFLFFSFAIPITLGLI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AWGTSKWDKMGPWDLGEGMFKLFAVLSIVAMVLIFVLGIQPPNDWALYITVGFLIVTGII
HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHH
WFAFEKRRFRGPPIGDEVARRQAEIAAAERAVGEA
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SDYSEIDKKQDLQVLHSMGYAQELERRMSQFSNFAVSFSIICILSGGINSLAQATSGAG
CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHCCCCC
GAAIGIGWPLGCFISFVFAVAMAQISSAYPTAGGLYHWGSILGNRFTGWLTAWFNLLGLV
CCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
TVLGAINVGTYYFFMGSFGTPYFGLEDTTGTRIVFLAIITGAQALVNHMGIALTAKLTDF
HHHHHHHHHHHHEEECCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHCCEEEEEEECCC
SGYLIFVTAILLAIVCLAVADTYEIGRLFTFSNYSGEAGGNVWPQTSATWVFLLGLLLPI
CCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHH
YTITGYDASAHTSEETVKAAHSVPRGMISSVLWAALFGYIMLCAFVLMIPDMDEAAKQGW
HHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCC
NVFFWAMDAQVNPIVRDILYLAILVSQWLCGLATVTSVSRMIFAFSRDGGLPASKALSKV
EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHC
SPTYRTPVAAIWTGSILAVLFVWGSSLVSIGDTPVYTIVVSCTVIFLFFSFAIPITLGLI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AWGTSKWDKMGPWDLGEGMFKLFAVLSIVAMVLIFVLGIQPPNDWALYITVGFLIVTGII
HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHH
WFAFEKRRFRGPPIGDEVARRQAEIAAAERAVGEA
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA