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The map label for this gene is ybiS [C]

Identifier: 150397326

GI number: 150397326

Start: 2189393

End: 2190784

Strand: Direct

Name: ybiS [C]

Synonym: Smed_2125

Alternate gene names: 150397326

Gene position: 2189393-2190784 (Clockwise)

Preceding gene: 150397323

Following gene: 150397327

Centisome position: 57.89

GC content: 62.5

Gene sequence:

>1392_bases
ATGTACCGCCGCAAAGCAACCGCCATGATGACAGGTTCCCTCGTGACGCCCGCAACCCGCACCGGCCTCTCGCTCTTCGC
AGCACTCGCCTTCATCGCCGTGGAGCTTGCGCCCGCTTACGCCCAGGACGCCTATGGGGGCTATTGGGGCAGCGGCGACG
CACTGCTCGTCACGCCCGAAGGCGACATTCTCGACTATATCCCGGGAGAGGCCGAAGTTCAGGCCATGCGCGACCGCCGC
GGGCGCACGGTACTTGTGGATCCGTGGGGCAATATCGTCGCAACCGTCGTGCCGAATGACGGTAATGGGCGTCGGAACCG
GCGCCGCGAATATGGCCGCGATGCCTATCCCGATCCGCGCGATCGCGGTTACGGCTATTCCGAGCCTGGCGAATTTACCG
GCGCCGTCCCCGGATATCCCGAGGCTCCGGTGGAGCGTGAGGAACTGCCGAACAGCCTACCCTCGCTGTCAGAGGAGGCA
GCCTACGATCCGCAATACGACAATCCCCTGGCGCAGCCCATGCCTCCGGCCATGACCGTGAAAGGCAAGTCGAGCGCGGA
GATCGCCGCACTGCAGGTATTCCTCGACCGCGAAGGCTTCTCGCCTGGCGTTATCGACGGAAAGATGGGGTCCAACGTCA
CCAAGGCCATCGAAGCCTGGCAGCAGGCAACAGGCGAGACGCTCGATCCGAACAATACCGAGGACATTCTCGAGCGGCTG
CGCTTCAACGGCGGCTTGCCTATAACCACTTATACGATCACCGCCGCCGACGCTGCCGGTCCTTTTGTTGCCTCCATTCC
GGAAGATTACGCCCACAAGGCGCAGCTTCCGCATCTGTCCTTCACGTCCGTGACGGAGATGCTCGGCGAAAAGTTCCATA
TGGACGAGGCCTATCTGCGCGAGCTCAACCCCGGTGCAGACTTCTCCATTCCCGGTACCACCATCAAGGTCGTCAATCCC
GGTGCGTATAAGAAGGGCAAGGTAGCGCGCATCGTCGCGGATAAGGGCCGCAAGCAGGTGCTCGCCTATGACGAGGCGGG
ACAGCTGCTCGCCGCTTATCCGGCCACCATCGGATCGGCCGACACGCCGTCGCCATCGGGCACGGTGAATGTGGAGCGAA
TCGCCTTCGATCCCGGCTACACATACAATCCGAAGATCAACTTCCAGCAGGGCGCCAACGACAGAATCCTGCAGTTGCAA
CCGGGCCCGAACGGACCGGTTGGCACCGTCTGGATCGCGCTGTCGAAGCCGACATACGGCATCCACGGCACCCCGGAGCC
GTCGAAGATCGGCAAGACCCAGAGCCATGGCTGCATCCGCCTGACCAACTGGGATGCGACGGAACTCGGCAAAATGGTCA
GCACGGGCGTGACGGTCGAATTCGTAGAATAA

Upstream 100 bases:

>100_bases
GCCAGTAGGCGAACGTTGCAATGGACAGCATGTTGGCCTAACTAATTTAACCCGCCGTTAATGATGAGTTCACGTTTTTC
ACATTAACGTCCAAATCGGT

Downstream 100 bases:

>100_bases
TCGCGCAATGGCACTCACCGTCCAGCTGCGATCGCGCCCGAGCGCAGCTGGCCCGGCGCCGTCATGACATCATGAAACAT
TGTCATGAAAGACTCTGCGG

Product: ErfK/YbiS/YcfS/YnhG family protein

Products: NA

Alternate protein names: Spore protein YkuD homolog [H]

Number of amino acids: Translated: 463; Mature: 463

Protein sequence:

>463_residues
MYRRKATAMMTGSLVTPATRTGLSLFAALAFIAVELAPAYAQDAYGGYWGSGDALLVTPEGDILDYIPGEAEVQAMRDRR
GRTVLVDPWGNIVATVVPNDGNGRRNRRREYGRDAYPDPRDRGYGYSEPGEFTGAVPGYPEAPVEREELPNSLPSLSEEA
AYDPQYDNPLAQPMPPAMTVKGKSSAEIAALQVFLDREGFSPGVIDGKMGSNVTKAIEAWQQATGETLDPNNTEDILERL
RFNGGLPITTYTITAADAAGPFVASIPEDYAHKAQLPHLSFTSVTEMLGEKFHMDEAYLRELNPGADFSIPGTTIKVVNP
GAYKKGKVARIVADKGRKQVLAYDEAGQLLAAYPATIGSADTPSPSGTVNVERIAFDPGYTYNPKINFQQGANDRILQLQ
PGPNGPVGTVWIALSKPTYGIHGTPEPSKIGKTQSHGCIRLTNWDATELGKMVSTGVTVEFVE

Sequences:

>Translated_463_residues
MYRRKATAMMTGSLVTPATRTGLSLFAALAFIAVELAPAYAQDAYGGYWGSGDALLVTPEGDILDYIPGEAEVQAMRDRR
GRTVLVDPWGNIVATVVPNDGNGRRNRRREYGRDAYPDPRDRGYGYSEPGEFTGAVPGYPEAPVEREELPNSLPSLSEEA
AYDPQYDNPLAQPMPPAMTVKGKSSAEIAALQVFLDREGFSPGVIDGKMGSNVTKAIEAWQQATGETLDPNNTEDILERL
RFNGGLPITTYTITAADAAGPFVASIPEDYAHKAQLPHLSFTSVTEMLGEKFHMDEAYLRELNPGADFSIPGTTIKVVNP
GAYKKGKVARIVADKGRKQVLAYDEAGQLLAAYPATIGSADTPSPSGTVNVERIAFDPGYTYNPKINFQQGANDRILQLQ
PGPNGPVGTVWIALSKPTYGIHGTPEPSKIGKTQSHGCIRLTNWDATELGKMVSTGVTVEFVE
>Mature_463_residues
MYRRKATAMMTGSLVTPATRTGLSLFAALAFIAVELAPAYAQDAYGGYWGSGDALLVTPEGDILDYIPGEAEVQAMRDRR
GRTVLVDPWGNIVATVVPNDGNGRRNRRREYGRDAYPDPRDRGYGYSEPGEFTGAVPGYPEAPVEREELPNSLPSLSEEA
AYDPQYDNPLAQPMPPAMTVKGKSSAEIAALQVFLDREGFSPGVIDGKMGSNVTKAIEAWQQATGETLDPNNTEDILERL
RFNGGLPITTYTITAADAAGPFVASIPEDYAHKAQLPHLSFTSVTEMLGEKFHMDEAYLRELNPGADFSIPGTTIKVVNP
GAYKKGKVARIVADKGRKQVLAYDEAGQLLAAYPATIGSADTPSPSGTVNVERIAFDPGYTYNPKINFQQGANDRILQLQ
PGPNGPVGTVWIALSKPTYGIHGTPEPSKIGKTQSHGCIRLTNWDATELGKMVSTGVTVEFVE

Specific function: Probable enzyme that may play an important role in cell wall biology [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Spore wall. Note=Probably localized either on the surface of the outer spore membrane and/or in the inner spore coat (By similarity) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

None

Paralogues:

None

Copy number: 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 160 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01476 LysM; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 49904; Mature: 49904

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYRRKATAMMTGSLVTPATRTGLSLFAALAFIAVELAPAYAQDAYGGYWGSGDALLVTPE
CCCCCCHHEEECCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCEEEECCC
GDILDYIPGEAEVQAMRDRRGRTVLVDPWGNIVATVVPNDGNGRRNRRREYGRDAYPDPR
CCEEECCCCHHHHHHHHHCCCCEEEECCCCCEEEEEEECCCCCCHHHHHHHCCCCCCCCC
DRGYGYSEPGEFTGAVPGYPEAPVEREELPNSLPSLSEEAAYDPQYDNPLAQPMPPAMTV
CCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEE
KGKSSAEIAALQVFLDREGFSPGVIDGKMGSNVTKAIEAWQQATGETLDPNNTEDILERL
CCCCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
RFNGGLPITTYTITAADAAGPFVASIPEDYAHKAQLPHLSFTSVTEMLGEKFHMDEAYLR
HHCCCCCEEEEEEEECCCCCCEEECCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHH
ELNPGADFSIPGTTIKVVNPGAYKKGKVARIVADKGRKQVLAYDEAGQLLAAYPATIGSA
HCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEEECCCCCEEEECCCCCCCC
DTPSPSGTVNVERIAFDPGYTYNPKINFQQGANDRILQLQPGPNGPVGTVWIALSKPTYG
CCCCCCCEEEEEEEEECCCCEECCEECCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCC
IHGTPEPSKIGKTQSHGCIRLTNWDATELGKMVSTGVTVEFVE
CCCCCCHHHCCCCCCCCEEEEECCCHHHHHHHHHCCEEEEEEC
>Mature Secondary Structure
MYRRKATAMMTGSLVTPATRTGLSLFAALAFIAVELAPAYAQDAYGGYWGSGDALLVTPE
CCCCCCHHEEECCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCEEEECCC
GDILDYIPGEAEVQAMRDRRGRTVLVDPWGNIVATVVPNDGNGRRNRRREYGRDAYPDPR
CCEEECCCCHHHHHHHHHCCCCEEEECCCCCEEEEEEECCCCCCHHHHHHHCCCCCCCCC
DRGYGYSEPGEFTGAVPGYPEAPVEREELPNSLPSLSEEAAYDPQYDNPLAQPMPPAMTV
CCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEE
KGKSSAEIAALQVFLDREGFSPGVIDGKMGSNVTKAIEAWQQATGETLDPNNTEDILERL
CCCCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
RFNGGLPITTYTITAADAAGPFVASIPEDYAHKAQLPHLSFTSVTEMLGEKFHMDEAYLR
HHCCCCCEEEEEEEECCCCCCEEECCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHH
ELNPGADFSIPGTTIKVVNPGAYKKGKVARIVADKGRKQVLAYDEAGQLLAAYPATIGSA
HCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEEECCCCCEEEECCCCCCCC
DTPSPSGTVNVERIAFDPGYTYNPKINFQQGANDRILQLQPGPNGPVGTVWIALSKPTYG
CCCCCCCEEEEEEEEECCCCEECCEECCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCC
IHGTPEPSKIGKTQSHGCIRLTNWDATELGKMVSTGVTVEFVE
CCCCCCHHHCCCCCCCCEEEEECCCHHHHHHHHHCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA