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The map label for this gene is ycjO [C]

Identifier: 150397263

GI number: 150397263

Start: 2112943

End: 2113854

Strand: Direct

Name: ycjO [C]

Synonym: Smed_2062

Alternate gene names: 150397263

Gene position: 2112943-2113854 (Clockwise)

Preceding gene: 150397262

Following gene: 150397264

Centisome position: 55.87

GC content: 56.36

Gene sequence:

>912_bases
ATGAAATCGCTGTTCCGGCAACGATCGGGCGTGTTCAGCAAGATCACGACGGTGCCGTTTCTTCTGCTGGTAATCGGCGT
TGGCGGTTATTCCTGGGCGCAAGTTATCGTCATGGCATTCTCTCGCCTTCGAATTGAGGCGGGGCAATTTGTCTGGTCGC
CGGCCGGCTTCGATAACTTCAGGGATATCCTGGCCAATGACGTGGCGCTTTATTCGGTTGCGGTCACCACGATTTTCGTG
ATCGCAACGGTCTGGCTGTCGGTGCTGCTCGGGCTGTTGCTCGCACTCCTTGTGCAACGCAGCAAGCGTTTCAATCGGCT
TGCGCAGGTCGTCCTGTTGTGGCCGGCCATGGTTGCCCCAGTCGTGGTCAGCCTGATCTGGCTCCTGATTCTCAGCCCCA
ATATCGGCGTTCTTAATAAGCTTCTCGATACGTTCATGCTGCCGACGCAGGATTGGCTCGGTATGGAAGTCGGTGCGATC
GTGGCGATCGTTATCGTCGATGTCTGGCACTGGACTCCCGTCGCCTTTCTGATGCTCTACACGGCACTCTGCGCCGTCGA
TGAAGAGGCGGTGGAAGCGGCGCGCTGCGACGGCGCCAACGAATGGCAAGTCATCCGCTACGTCAAGATACCGATGCTAA
TGCCGGCCATTTTGGGAACGATCTTCATTCGTGCCGTCATGGGTGTGAAAGCATTCGATGAAATGTACCTCCTCACTGCG
GGCGGGCCGAACAATGCAACGACGCTCGTGTCGCTGCACATTCGCGACGTCTTCTTCGATCAGCTGAATTACGGCTACGG
GTCAGCCTTCAGTGTGCTGATCGTCCTTCTGATGTCACTGATCATCGCGTTGGTGCTCACTGTCAGGACATTGCGTCACA
GCCGGTTTTTTATGCGTGAGGTGCAGGAATGA

Upstream 100 bases:

>100_bases
ACGGGAGAACCCAGGAGGATAGGTTGCTGGCTGATTTGCACCATCGTCATGCTTGGCGTGAACATATCGTGGTGCGCCCG
ATTCGAGGGTGCACGGGGAT

Downstream 100 bases:

>100_bases
CCGCAGGTAGTCACGCCATAAAGGCAGAAGTAGCGACCCGTTCGAAACTCCGGCGGCGCCATAGCCTGTCCGACATGACG
TCCGATGCCGTTCTGGTCCT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MKSLFRQRSGVFSKITTVPFLLLVIGVGGYSWAQVIVMAFSRLRIEAGQFVWSPAGFDNFRDILANDVALYSVAVTTIFV
IATVWLSVLLGLLLALLVQRSKRFNRLAQVVLLWPAMVAPVVVSLIWLLILSPNIGVLNKLLDTFMLPTQDWLGMEVGAI
VAIVIVDVWHWTPVAFLMLYTALCAVDEEAVEAARCDGANEWQVIRYVKIPMLMPAILGTIFIRAVMGVKAFDEMYLLTA
GGPNNATTLVSLHIRDVFFDQLNYGYGSAFSVLIVLLMSLIIALVLTVRTLRHSRFFMREVQE

Sequences:

>Translated_303_residues
MKSLFRQRSGVFSKITTVPFLLLVIGVGGYSWAQVIVMAFSRLRIEAGQFVWSPAGFDNFRDILANDVALYSVAVTTIFV
IATVWLSVLLGLLLALLVQRSKRFNRLAQVVLLWPAMVAPVVVSLIWLLILSPNIGVLNKLLDTFMLPTQDWLGMEVGAI
VAIVIVDVWHWTPVAFLMLYTALCAVDEEAVEAARCDGANEWQVIRYVKIPMLMPAILGTIFIRAVMGVKAFDEMYLLTA
GGPNNATTLVSLHIRDVFFDQLNYGYGSAFSVLIVLLMSLIIALVLTVRTLRHSRFFMREVQE
>Mature_303_residues
MKSLFRQRSGVFSKITTVPFLLLVIGVGGYSWAQVIVMAFSRLRIEAGQFVWSPAGFDNFRDILANDVALYSVAVTTIFV
IATVWLSVLLGLLLALLVQRSKRFNRLAQVVLLWPAMVAPVVVSLIWLLILSPNIGVLNKLLDTFMLPTQDWLGMEVGAI
VAIVIVDVWHWTPVAFLMLYTALCAVDEEAVEAARCDGANEWQVIRYVKIPMLMPAILGTIFIRAVMGVKAFDEMYLLTA
GGPNNATTLVSLHIRDVFFDQLNYGYGSAFSVLIVLLMSLIIALVLTVRTLRHSRFFMREVQE

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=263, Percent_Identity=25.0950570342205, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1789861, Length=286, Percent_Identity=27.6223776223776, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1790465, Length=197, Percent_Identity=26.3959390862944, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33829; Mature: 33829

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSLFRQRSGVFSKITTVPFLLLVIGVGGYSWAQVIVMAFSRLRIEAGQFVWSPAGFDNF
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCHHH
RDILANDVALYSVAVTTIFVIATVWLSVLLGLLLALLVQRSKRFNRLAQVVLLWPAMVAP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVVSLIWLLILSPNIGVLNKLLDTFMLPTQDWLGMEVGAIVAIVIVDVWHWTPVAFLMLY
HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TALCAVDEEAVEAARCDGANEWQVIRYVKIPMLMPAILGTIFIRAVMGVKAFDEMYLLTA
HHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEC
GGPNNATTLVSLHIRDVFFDQLNYGYGSAFSVLIVLLMSLIIALVLTVRTLRHSRFFMRE
CCCCCCEEEEEHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VQE
HCC
>Mature Secondary Structure
MKSLFRQRSGVFSKITTVPFLLLVIGVGGYSWAQVIVMAFSRLRIEAGQFVWSPAGFDNF
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCHHH
RDILANDVALYSVAVTTIFVIATVWLSVLLGLLLALLVQRSKRFNRLAQVVLLWPAMVAP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVVSLIWLLILSPNIGVLNKLLDTFMLPTQDWLGMEVGAIVAIVIVDVWHWTPVAFLMLY
HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TALCAVDEEAVEAARCDGANEWQVIRYVKIPMLMPAILGTIFIRAVMGVKAFDEMYLLTA
HHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEC
GGPNNATTLVSLHIRDVFFDQLNYGYGSAFSVLIVLLMSLIIALVLTVRTLRHSRFFMRE
CCCCCCEEEEEHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VQE
HCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]