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The map label for this gene is rbsC [H]

Identifier: 150397243

GI number: 150397243

Start: 2094538

End: 2095524

Strand: Direct

Name: rbsC [H]

Synonym: Smed_2042

Alternate gene names: 150397243

Gene position: 2094538-2095524 (Clockwise)

Preceding gene: 150397242

Following gene: 150397244

Centisome position: 55.38

GC content: 58.66

Gene sequence:

>987_bases
ATGCAACAACGTACGTTCCTGCAAAGCTTCGTCTCGAAGCCGGAATTCGGTCCGCTCGTGCTTCTGGTGCTCGAGCTTAT
GGTCTTCTGGTCTTTCAACTCGGATTTTCTGTCGCTTCCGAACATCAGCAATACGCTGTCCTTTACCGTCGAACTCGGCC
TGATCGCACTGGCAATGACTTTGCTCATGACGGCGGGTGAGTTCGATCTTTCGGTCGGCTCGGTATTCGGCTTCTCGGCT
GTCCTGATGTGGACCTTGTTCAACAGCGAGATGATGCCGCTCGGGGTCGCATTCCTCGTGGCGATTGCCGCCAGTCTGCT
GATCGGCTTTGTCAACGGATGGTTCGTCACGAAGCTGAACATACCGTCCTTCCTCGTGACGCTCGGGATGCTCCTGGTCG
TCCGAGGCACCGCTCTCTACGTCACCGACGGTTTCCCGCAGCGGACCTGGAATGCGGAAGGCAACCTGTTTGCCAACGTT
CTGGCTGGAAGCTACTTCATCGGCAGTTTCCGGATGTACATGTCGGTGATCTGGTTCGCGCTGGCAGCGGTTGCGGCACA
TTACGTGCTCACAAAGACAAAGGCTGGAAACTGGATCCAGGCTTCGGGAGGCAATCCGAACGCTGCACGCGCGCGCGGGG
TCAACGTGAGCCGCACGAAGATATGCCTGTTCATGGCATCATCCGCGATGGCGTCGCTTGCCGGCATCATCAGCTCCATC
CGTACCTCTGCGGCCAACCCCAACAGCGGCACCGGCTACGAGCTTGAGGTGATCGCCATGGTGGTGATCGGCGGCACCGT
GCTCACCGGCGGCCGCGGGACGATCATCGGCACGGTGCTCGGCATTTTCATTCTGCGCGTCATGCGCAACGGCATCGTCA
TGATCGGCGTGCCCGGCCTTGCCTACAACATCTTCATCGGCGCGATCATCCTCGGAATGATGGCACTGCACTCATGGCTG
GAACGCCGACACAACTCAGGAGTATAA

Upstream 100 bases:

>100_bases
AGCTCTACGACAAGATCCTCTCCGGCAAGTAAGCCTCTCGAGTTCAGTCTGGCTGCGTCACCCGGCTTGTTCCGGGTGGC
CAACCCAACCGGTGAGAATC

Downstream 100 bases:

>100_bases
GGATGGCCGAAGATCTGATCCGAATGGAGAAAATCAACAAGTTCTACGGCCGCATCCATGCCCTTCGGGACGTCAACCTG
ACCGTCCGGACGCATGAGGT

Product: monosaccharide-transporting ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MQQRTFLQSFVSKPEFGPLVLLVLELMVFWSFNSDFLSLPNISNTLSFTVELGLIALAMTLLMTAGEFDLSVGSVFGFSA
VLMWTLFNSEMMPLGVAFLVAIAASLLIGFVNGWFVTKLNIPSFLVTLGMLLVVRGTALYVTDGFPQRTWNAEGNLFANV
LAGSYFIGSFRMYMSVIWFALAAVAAHYVLTKTKAGNWIQASGGNPNAARARGVNVSRTKICLFMASSAMASLAGIISSI
RTSAANPNSGTGYELEVIAMVVIGGTVLTGGRGTIIGTVLGIFILRVMRNGIVMIGVPGLAYNIFIGAIILGMMALHSWL
ERRHNSGV

Sequences:

>Translated_328_residues
MQQRTFLQSFVSKPEFGPLVLLVLELMVFWSFNSDFLSLPNISNTLSFTVELGLIALAMTLLMTAGEFDLSVGSVFGFSA
VLMWTLFNSEMMPLGVAFLVAIAASLLIGFVNGWFVTKLNIPSFLVTLGMLLVVRGTALYVTDGFPQRTWNAEGNLFANV
LAGSYFIGSFRMYMSVIWFALAAVAAHYVLTKTKAGNWIQASGGNPNAARARGVNVSRTKICLFMASSAMASLAGIISSI
RTSAANPNSGTGYELEVIAMVVIGGTVLTGGRGTIIGTVLGIFILRVMRNGIVMIGVPGLAYNIFIGAIILGMMALHSWL
ERRHNSGV
>Mature_328_residues
MQQRTFLQSFVSKPEFGPLVLLVLELMVFWSFNSDFLSLPNISNTLSFTVELGLIALAMTLLMTAGEFDLSVGSVFGFSA
VLMWTLFNSEMMPLGVAFLVAIAASLLIGFVNGWFVTKLNIPSFLVTLGMLLVVRGTALYVTDGFPQRTWNAEGNLFANV
LAGSYFIGSFRMYMSVIWFALAAVAAHYVLTKTKAGNWIQASGGNPNAARARGVNVSRTKICLFMASSAMASLAGIISSI
RTSAANPNSGTGYELEVIAMVVIGGTVLTGGRGTIIGTVLGIFILRVMRNGIVMIGVPGLAYNIFIGAIILGMMALHSWL
ERRHNSGV

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788896, Length=322, Percent_Identity=33.2298136645963, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI1790191, Length=311, Percent_Identity=33.7620578778135, Blast_Score=140, Evalue=2e-34,
Organism=Escherichia coli, GI1789992, Length=374, Percent_Identity=30.2139037433155, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI87082395, Length=252, Percent_Identity=32.5396825396825, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI145693152, Length=316, Percent_Identity=30.379746835443, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1790524, Length=318, Percent_Identity=27.6729559748428, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1787793, Length=281, Percent_Identity=34.8754448398576, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1788471, Length=284, Percent_Identity=34.5070422535211, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787794, Length=327, Percent_Identity=25.6880733944954, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI145693214, Length=265, Percent_Identity=29.811320754717, Blast_Score=72, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35194; Mature: 35194

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQRTFLQSFVSKPEFGPLVLLVLELMVFWSFNSDFLSLPNISNTLSFTVELGLIALAMT
CCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHHHH
LLMTAGEFDLSVGSVFGFSAVLMWTLFNSEMMPLGVAFLVAIAASLLIGFVNGWFVTKLN
HHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEC
IPSFLVTLGMLLVVRGTALYVTDGFPQRTWNAEGNLFANVLAGSYFIGSFRMYMSVIWFA
CHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LAAVAAHYVLTKTKAGNWIQASGGNPNAARARGVNVSRTKICLFMASSAMASLAGIISSI
HHHHHHHHHHEECCCCCEEEECCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
RTSAANPNSGTGYELEVIAMVVIGGTVLTGGRGTIIGTVLGIFILRVMRNGIVMIGVPGL
HHCCCCCCCCCCEEHHHHEEEHHCCEEEECCCCHHHHHHHHHHHHHHHHCCEEEEECCCH
AYNIFIGAIILGMMALHSWLERRHNSGV
HHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MQQRTFLQSFVSKPEFGPLVLLVLELMVFWSFNSDFLSLPNISNTLSFTVELGLIALAMT
CCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHHHH
LLMTAGEFDLSVGSVFGFSAVLMWTLFNSEMMPLGVAFLVAIAASLLIGFVNGWFVTKLN
HHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEC
IPSFLVTLGMLLVVRGTALYVTDGFPQRTWNAEGNLFANVLAGSYFIGSFRMYMSVIWFA
CHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LAAVAAHYVLTKTKAGNWIQASGGNPNAARARGVNVSRTKICLFMASSAMASLAGIISSI
HHHHHHHHHHEECCCCCEEEECCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
RTSAANPNSGTGYELEVIAMVVIGGTVLTGGRGTIIGTVLGIFILRVMRNGIVMIGVPGL
HHCCCCCCCCCCEEHHHHEEEHHCCEEEECCCCHHHHHHHHHHHHHHHHCCEEEEECCCH
AYNIFIGAIILGMMALHSWLERRHNSGV
HHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]