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The map label for this gene is ynhG [H]

Identifier: 150397160

GI number: 150397160

Start: 2010166

End: 2010855

Strand: Reverse

Name: ynhG [H]

Synonym: Smed_1958

Alternate gene names: 150397160

Gene position: 2010855-2010166 (Counterclockwise)

Preceding gene: 150397161

Following gene: 150397159

Centisome position: 53.17

GC content: 59.42

Gene sequence:

>690_bases
ATGACGATGAGCCAGGAGTTCCCGAAGATATCTGTCGGCCGCCGCAAATTTGGAAAGGCGCTGCTTCTCCTCGGTTTTTG
CCTTATTCCGCTTGCAGCGCTTGCCCAGACACAGATCTACGATTCCAAGACAAAGAAATGGGTGAACTACGACAAGAGGA
AAGCGCGACAGTATTTCTCGCGAAACAATCAGGTTCCCGAGGCCTTTCGCCGACAGATGGTGCCGTTTCGCACGGCGGAA
GTTCCGGGCACGATTATCATCGATGGCAACCAGCATTTCCTCTATCTGGTCCAGCCGGGTGGTCAGGCGATTCGCTACGG
CATCGGTGTGGGCCGCGAAGGTTTCGGTTGGGCGGGTATCGTCCGGGTGGGGCGCAGGGCCGAGTGGCCGACCTGGACGC
CCCCGGCCGAAATGGTCGCACGCGATCCGAATGCGGCAAAATGGGCAGGCGGCATGCCCGGCGGACCGGACAATCCGCTG
GGCGCCCGAGCGCTTTACCTTTACGAGGGCGATAGCGATACGATCTACCGCATCCATGGTACGGTGGAGCCCTGGACGAT
CGGTCTCGACGTCTCCTCCGGCTGTATAAGAATGAACAATGACAATATCATCGACCTGTATTCGCGCGTCGACGTGGGCG
CGAAGGTCATCGTGCTGATGCAGGGGGCCGCGCTCTACAAGGGCGTGTGA

Upstream 100 bases:

>100_bases
CGGCGATGAGTTATGCGCTCCAAGTCGAGCGGCAGACGCCGGTGGACTACGCCAGGAAGTGGGTTGAAAGCCACGCGGAA
CGGATCGACGGATGGGCGAA

Downstream 100 bases:

>100_bases
CCCGGAAAAGGCCGGTGACCGGGGCCGGTCGGGTGAGAGCGGGAAGTTGCAGGCTGTCGCTACGACGAGATCGGAGGGTG
GGAATTTGCCGACGAGTAAA

Product: ErfK/YbiS/YcfS/YnhG family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MTMSQEFPKISVGRRKFGKALLLLGFCLIPLAALAQTQIYDSKTKKWVNYDKRKARQYFSRNNQVPEAFRRQMVPFRTAE
VPGTIIIDGNQHFLYLVQPGGQAIRYGIGVGREGFGWAGIVRVGRRAEWPTWTPPAEMVARDPNAAKWAGGMPGGPDNPL
GARALYLYEGDSDTIYRIHGTVEPWTIGLDVSSGCIRMNNDNIIDLYSRVDVGAKVIVLMQGAALYKGV

Sequences:

>Translated_229_residues
MTMSQEFPKISVGRRKFGKALLLLGFCLIPLAALAQTQIYDSKTKKWVNYDKRKARQYFSRNNQVPEAFRRQMVPFRTAE
VPGTIIIDGNQHFLYLVQPGGQAIRYGIGVGREGFGWAGIVRVGRRAEWPTWTPPAEMVARDPNAAKWAGGMPGGPDNPL
GARALYLYEGDSDTIYRIHGTVEPWTIGLDVSSGCIRMNNDNIIDLYSRVDVGAKVIVLMQGAALYKGV
>Mature_228_residues
TMSQEFPKISVGRRKFGKALLLLGFCLIPLAALAQTQIYDSKTKKWVNYDKRKARQYFSRNNQVPEAFRRQMVPFRTAEV
PGTIIIDGNQHFLYLVQPGGQAIRYGIGVGREGFGWAGIVRVGRRAEWPTWTPPAEMVARDPNAAKWAGGMPGGPDNPLG
ARALYLYEGDSDTIYRIHGTVEPWTIGLDVSSGCIRMNNDNIIDLYSRVDVGAKVIVLMQGAALYKGV

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1787968, Length=138, Percent_Identity=41.304347826087, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI1787040, Length=138, Percent_Identity=37.6811594202899, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1788299, Length=143, Percent_Identity=34.965034965035, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1787356, Length=165, Percent_Identity=34.5454545454545, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01476 LysM; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 25451; Mature: 25320

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMSQEFPKISVGRRKFGKALLLLGFCLIPLAALAQTQIYDSKTKKWVNYDKRKARQYFS
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
RNNQVPEAFRRQMVPFRTAEVPGTIIIDGNQHFLYLVQPGGQAIRYGIGVGREGFGWAGI
CCCCCHHHHHHHCCCCEECCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCHHHH
VRVGRRAEWPTWTPPAEMVARDPNAAKWAGGMPGGPDNPLGARALYLYEGDSDTIYRIHG
HHHCCCCCCCCCCCCHHHHCCCCCCHHCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEC
TVEPWTIGLDVSSGCIRMNNDNIIDLYSRVDVGAKVIVLMQGAALYKGV
CCCCEEEEEECCCCEEEECCCCEEEEEHHCCCCCEEEEEECCCHHHCCC
>Mature Secondary Structure 
TMSQEFPKISVGRRKFGKALLLLGFCLIPLAALAQTQIYDSKTKKWVNYDKRKARQYFS
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
RNNQVPEAFRRQMVPFRTAEVPGTIIIDGNQHFLYLVQPGGQAIRYGIGVGREGFGWAGI
CCCCCHHHHHHHCCCCEECCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCHHHH
VRVGRRAEWPTWTPPAEMVARDPNAAKWAGGMPGGPDNPLGARALYLYEGDSDTIYRIHG
HHHCCCCCCCCCCCCHHHHCCCCCCHHCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEC
TVEPWTIGLDVSSGCIRMNNDNIIDLYSRVDVGAKVIVLMQGAALYKGV
CCCCEEEEEECCCCEEEECCCCEEEEEHHCCCCCEEEEEECCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 9097039 [H]