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The map label for this gene is 150397142

Identifier: 150397142

GI number: 150397142

Start: 1992090

End: 1992758

Strand: Reverse

Name: 150397142

Synonym: Smed_1940

Alternate gene names: NA

Gene position: 1992758-1992090 (Counterclockwise)

Preceding gene: 150397143

Following gene: 150397141

Centisome position: 52.69

GC content: 61.29

Gene sequence:

>669_bases
GTGAACATTCAGCATCTGCTTATGAGGATCGACGCCATCAGCGTCTGGACCGGCAAGGCGGCGGCGTGGCTGATCCTTGG
GCTGATGCTGCTGGTCTGCGGCGAAGTCTTCAAGCGTTATATCCTGAACATGCCGACCGCCTGGATCTTCGACGCCAGCA
ACATGCTCTACGGCAGCCTGTTCATGCTTGCAGGGGCCTATGCACTGGCGCAGAACGCCCACGTGCGGGGTGATTTCCTT
TACAGTGCGTTCAGGCCGCGCACACAGGCGGCACTGGACCTTATTCTGTACATCCTCTTCTTTCTGCCGGGCATCGCCGC
CCTCATCTATGCCGGTTACGACTACGCCGCATTGTCCTGGCGGATCGGCGAACACTCGACGGTCACGGCCGAAGGGCCAC
CGCTTTATTTTTTCAAGACGGTTATTCCTGTCGCCGGCGCGCTCGTCATATTCCAGGGACTTGCGGAGATCCTGCGCTGC
ATCATCTGTCTCAAGACCGGGGCCTGGCCAGCCCGGCTGAAGGATGTCGAGGAGATCGATGTCGTAGCCGAGCAGCTAGC
CCACAGCGAGCATCTCGACCAGGAAACGCGCGAGGCTGCGTTGGAACGCGCGCAGGACATCGACAGGGCAGCCCGGCAGC
GCGGGCTCGGAGGGGAGAGCCGTGAGTGA

Upstream 100 bases:

>100_bases
GGAGGGGGTCGCCAAGTCGCTCTGACATAATCCGATCCTGCACATCGCCGGCATGCGGCGGTGATGTGCAGTCAGGACAT
GGCTATCCCCGGGGGTGCGC

Downstream 100 bases:

>100_bases
ACCATTCCTTGGCCTGACCATGCTTGGTCTCATCGTGGTCGTGATCATGATGGGATTTCCAACTGCCTTTACGCTCATGG
GGCTTGGAATGCTGTTCGGC

Product: tripartite ATP-independent periplasmic transporter DctQ

Products: NA

Alternate protein names: TRAP Transporter DctQ-Like Membrane Protein; Mannitol Transporter; TRAP Transporter DctQ Family Protein; Tripartite Transporter Small Subunit; TRAP Transporter Small Transmembrane Protein; Transporter DctQ Related Transmembrane Protein; TRAP-Type Transport System Small Permease Component; TRAP Mannitol/C4-Dicarboxylate Transporter; Permease; Small Integral Membrane Tranport Protein; Transmembrane Transporter Component; Trap Transporter Dctq Family; TRAP Dicarboxylate Transporter Subunit DctQ; TRAP-Type Transporter Small Permease Component; Trap Dicarboxylate Transporter Dctm Subunit; Trap-Type Transport System Small Permease Component; TRAP-Type Large Permease Component; TRAP-T Family Tripartite Transporter; Transporter DctQ-Related Transmembrane Protein; TRAP Transporter DctQ-Like Membrane Protein Family; TRAP Dicarboxylate Transporter DctQ Subunit; Permease Protein; Tripartite ATP-Independent Periplasmic; TRAP-Type Mannitol/Chloroaromatic Compound Transport System; C4-Dicarboxylate Transporter Small Subunit

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MNIQHLLMRIDAISVWTGKAAAWLILGLMLLVCGEVFKRYILNMPTAWIFDASNMLYGSLFMLAGAYALAQNAHVRGDFL
YSAFRPRTQAALDLILYILFFLPGIAALIYAGYDYAALSWRIGEHSTVTAEGPPLYFFKTVIPVAGALVIFQGLAEILRC
IICLKTGAWPARLKDVEEIDVVAEQLAHSEHLDQETREAALERAQDIDRAARQRGLGGESRE

Sequences:

>Translated_222_residues
MNIQHLLMRIDAISVWTGKAAAWLILGLMLLVCGEVFKRYILNMPTAWIFDASNMLYGSLFMLAGAYALAQNAHVRGDFL
YSAFRPRTQAALDLILYILFFLPGIAALIYAGYDYAALSWRIGEHSTVTAEGPPLYFFKTVIPVAGALVIFQGLAEILRC
IICLKTGAWPARLKDVEEIDVVAEQLAHSEHLDQETREAALERAQDIDRAARQRGLGGESRE
>Mature_222_residues
MNIQHLLMRIDAISVWTGKAAAWLILGLMLLVCGEVFKRYILNMPTAWIFDASNMLYGSLFMLAGAYALAQNAHVRGDFL
YSAFRPRTQAALDLILYILFFLPGIAALIYAGYDYAALSWRIGEHSTVTAEGPPLYFFKTVIPVAGALVIFQGLAEILRC
IICLKTGAWPARLKDVEEIDVVAEQLAHSEHLDQETREAALERAQDIDRAARQRGLGGESRE

Specific function: Unknown

COG id: COG4665

COG function: function code Q; TRAP-type mannitol/chloroaromatic compound transport system, small permease component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24705; Mature: 24705

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIQHLLMRIDAISVWTGKAAAWLILGLMLLVCGEVFKRYILNMPTAWIFDASNMLYGSL
CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEECHHHHHHHH
FMLAGAYALAQNAHVRGDFLYSAFRPRTQAALDLILYILFFLPGIAALIYAGYDYAALSW
HHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHEE
RIGEHSTVTAEGPPLYFFKTVIPVAGALVIFQGLAEILRCIICLKTGAWPARLKDVEEID
ECCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
VVAEQLAHSEHLDQETREAALERAQDIDRAARQRGLGGESRE
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MNIQHLLMRIDAISVWTGKAAAWLILGLMLLVCGEVFKRYILNMPTAWIFDASNMLYGSL
CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEECHHHHHHHH
FMLAGAYALAQNAHVRGDFLYSAFRPRTQAALDLILYILFFLPGIAALIYAGYDYAALSW
HHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHEE
RIGEHSTVTAEGPPLYFFKTVIPVAGALVIFQGLAEILRCIICLKTGAWPARLKDVEEID
ECCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
VVAEQLAHSEHLDQETREAALERAQDIDRAARQRGLGGESRE
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA