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The map label for this gene is yiaN [C]

Identifier: 150397141

GI number: 150397141

Start: 1990358

End: 1992097

Strand: Reverse

Name: yiaN [C]

Synonym: Smed_1939

Alternate gene names: 150397141

Gene position: 1992097-1990358 (Counterclockwise)

Preceding gene: 150397142

Following gene: 150397140

Centisome position: 52.67

GC content: 60.29

Gene sequence:

>1740_bases
GTGAGTGAACCATTCCTTGGCCTGACCATGCTTGGTCTCATCGTGGTCGTGATCATGATGGGATTTCCAACTGCCTTTAC
GCTCATGGGGCTTGGAATGCTGTTCGGCTTCTACGCCTTTTACAATCCGGCGGAACTCTGGATCGACAATCGTATCTTCG
ATCTCATGGTCCAACGCACCTATGGAGCAATGACCAACGACGTGCTGATCTCAGTTCCGCTTTTCGTGCTGATGGGCTAC
GTAATGGAGCGGGGCGCGCTGGTGGACAAAATGTTCTACAGCGTCCAGCTGTCGTTCCGGCGCGTTCCAGCGTCGCTCGC
CGTGACAACGCTCATCGTCTGCACCTTCTGGGGGATCGCCAGCGGCCTGGTCGGCGCCGTGGTGGTGCTGATGGGGGTGA
TCGCCATGAACCCGATGCTGCGGGCGGGTTACGATGTGAAGCTTGCCTCAGGCGTCATTACTGCCGGAGGTACGCTTGGC
ATCCTGATCCCGCCATCGGTGATGATCATCGTCTATGCGGCGGTGGCCGGGCAGTCCGTGGTCAAGCTGTATGCGGCGAC
GATGTTTCCAGGCTTCTTTCTGGCGCTTCTTTATCTCGCCTATGTCCTCGGCTGGGCGATGCTCAATCCGAAGATTGCGC
CGAGCCTCCCGGAGGAGCAGACGCGCGTTCCAGTGCCGCCATGGATGAAGCGATTCGCGGAACTCTATTCACCCAACATG
CTCGCCGGACTTCTCGTTGCTCTCGTCTCGCCATCACGCGCGCTCGGGATCGAGGCCGGTGAGGGACGGCTCACCTACTT
CAAGATCATCAAGAACATTGTTGCAGCATGCGTTCCGCTTCTCCTGACGGTGTCCACGTTCGGGCTTGTCTGGTGGTATG
TCGTCATTCATCAGCAGGCGGCCGCGTCCGAGGCACCGGAGGGACTGGAAGAGCTGGGCGCGCCGGTAGCGGATGCCGGA
CCGGCGACCGTTGGCGGTCCCGCGACGGGATTCTACATCTGGTTCGGCCTCGCTGCGGCGGTCGCCGCCGTCCCGCTCGT
GCGCTACTATCGCAGGATGACCGCCGAACGGCTTCAGGTGGTGAAGCTTCTCGCTTCCTCCGTCATGCCGCTCGCGCTTC
TGACGGTAATCGTGCTCGCGGTGATCCTGTTCGGCATAACGACTGCGACGGAGTCCGCCGCTGTCGGTGCCGCGGGCGCC
TTCCTGCTGGCGCTGCAGGCACGGACGCTCAACTGGCAGCGCACCAAGGAAGCGGTCTTCCTGACTGCGAAGACCACTGC
CATGGTCTGCTGGCTCTTCGTGGGTTCGGCCCTTTTCTCCGCCGTTTTCGCGATCCTCGGCGGACAGGCATTGGTCGAGC
AATGGGTTCTCGCGCTTGATCTGACGCCGATACAGTTCATGATTCTGTCGCAGGCGATCATCTTCATTCTCGGATGGCCG
CTCGAGTGGACCGAGATCATCATCATCTTCGTGCCGATTTTCCTCCCGATGCTCCACCACTTCGACATCGATCCGATCCT
CTGGGGCGTGCTCGTCTTCGTCAACCTGCAGGCTGCGTTCCTGTCGCCGCCGGTGGCGATGTCGGCCTACTATCTCAAGG
GCGTGTCACCGCCGCAGGTGACCCTCAACCAGATCTTCGCAGGGATGATGCCGTACATGCTGATCGTCATAGTCTGCATG
ATCATCATGTATATCTGGCCGGGGATGACACTCTGGCTGCCCGAATATCTCTACGGCTGA

Upstream 100 bases:

>100_bases
CACAGCGAGCATCTCGACCAGGAAACGCGCGAGGCTGCGTTGGAACGCGCGCAGGACATCGACAGGGCAGCCCGGCAGCG
CGGGCTCGGAGGGGAGAGCC

Downstream 100 bases:

>100_bases
GTTGGCAGAAGCGAAGTGCCTAAGCAAAAACAGGGCCCGCCGTCAGCGAGCGGGTCCTGGAAATTCGCGGCGAAATTGCC
AATCTCTATATTCACCGGCA

Product: TRAP dicarboxylate transporter subunit DctM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 579; Mature: 578

Protein sequence:

>579_residues
MSEPFLGLTMLGLIVVVIMMGFPTAFTLMGLGMLFGFYAFYNPAELWIDNRIFDLMVQRTYGAMTNDVLISVPLFVLMGY
VMERGALVDKMFYSVQLSFRRVPASLAVTTLIVCTFWGIASGLVGAVVVLMGVIAMNPMLRAGYDVKLASGVITAGGTLG
ILIPPSVMIIVYAAVAGQSVVKLYAATMFPGFFLALLYLAYVLGWAMLNPKIAPSLPEEQTRVPVPPWMKRFAELYSPNM
LAGLLVALVSPSRALGIEAGEGRLTYFKIIKNIVAACVPLLLTVSTFGLVWWYVVIHQQAAASEAPEGLEELGAPVADAG
PATVGGPATGFYIWFGLAAAVAAVPLVRYYRRMTAERLQVVKLLASSVMPLALLTVIVLAVILFGITTATESAAVGAAGA
FLLALQARTLNWQRTKEAVFLTAKTTAMVCWLFVGSALFSAVFAILGGQALVEQWVLALDLTPIQFMILSQAIIFILGWP
LEWTEIIIIFVPIFLPMLHHFDIDPILWGVLVFVNLQAAFLSPPVAMSAYYLKGVSPPQVTLNQIFAGMMPYMLIVIVCM
IIMYIWPGMTLWLPEYLYG

Sequences:

>Translated_579_residues
MSEPFLGLTMLGLIVVVIMMGFPTAFTLMGLGMLFGFYAFYNPAELWIDNRIFDLMVQRTYGAMTNDVLISVPLFVLMGY
VMERGALVDKMFYSVQLSFRRVPASLAVTTLIVCTFWGIASGLVGAVVVLMGVIAMNPMLRAGYDVKLASGVITAGGTLG
ILIPPSVMIIVYAAVAGQSVVKLYAATMFPGFFLALLYLAYVLGWAMLNPKIAPSLPEEQTRVPVPPWMKRFAELYSPNM
LAGLLVALVSPSRALGIEAGEGRLTYFKIIKNIVAACVPLLLTVSTFGLVWWYVVIHQQAAASEAPEGLEELGAPVADAG
PATVGGPATGFYIWFGLAAAVAAVPLVRYYRRMTAERLQVVKLLASSVMPLALLTVIVLAVILFGITTATESAAVGAAGA
FLLALQARTLNWQRTKEAVFLTAKTTAMVCWLFVGSALFSAVFAILGGQALVEQWVLALDLTPIQFMILSQAIIFILGWP
LEWTEIIIIFVPIFLPMLHHFDIDPILWGVLVFVNLQAAFLSPPVAMSAYYLKGVSPPQVTLNQIFAGMMPYMLIVIVCM
IIMYIWPGMTLWLPEYLYG
>Mature_578_residues
SEPFLGLTMLGLIVVVIMMGFPTAFTLMGLGMLFGFYAFYNPAELWIDNRIFDLMVQRTYGAMTNDVLISVPLFVLMGYV
MERGALVDKMFYSVQLSFRRVPASLAVTTLIVCTFWGIASGLVGAVVVLMGVIAMNPMLRAGYDVKLASGVITAGGTLGI
LIPPSVMIIVYAAVAGQSVVKLYAATMFPGFFLALLYLAYVLGWAMLNPKIAPSLPEEQTRVPVPPWMKRFAELYSPNML
AGLLVALVSPSRALGIEAGEGRLTYFKIIKNIVAACVPLLLTVSTFGLVWWYVVIHQQAAASEAPEGLEELGAPVADAGP
ATVGGPATGFYIWFGLAAAVAAVPLVRYYRRMTAERLQVVKLLASSVMPLALLTVIVLAVILFGITTATESAAVGAAGAF
LLALQARTLNWQRTKEAVFLTAKTTAMVCWLFVGSALFSAVFAILGGQALVEQWVLALDLTPIQFMILSQAIIFILGWPL
EWTEIIIIFVPIFLPMLHHFDIDPILWGVLVFVNLQAAFLSPPVAMSAYYLKGVSPPQVTLNQIFAGMMPYMLIVIVCMI
IMYIWPGMTLWLPEYLYG

Specific function: Unknown

COG id: COG4664

COG function: function code Q; TRAP-type mannitol/chloroaromatic compound transport system, large permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TRAP transporter large permease family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010656
- InterPro:   IPR004681 [H]

Pfam domain/function: PF06808 DctM [H]

EC number: NA

Molecular weight: Translated: 62982; Mature: 62851

Theoretical pI: Translated: 6.77; Mature: 6.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC
>Mature Secondary Structure 
SEPFLGLTMLGLIVVVIMMGFPTAFTLMGLGMLFGFYAFYNPAELWIDNRIFDLMVQRT
CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
YGAMTNDVLISVPLFVLMGYVMERGALVDKMFYSVQLSFRRVPASLAVTTLIVCTFWGIA
HCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
SGLVGAVVVLMGVIAMNPMLRAGYDVKLASGVITAGGTLGILIPPSVMIIVYAAVAGQSV
HHHHHHHHHHHHHHHHCHHHHCCCCEEECCCEEECCCEEEEECCCHHHHHHHHHHHHHHH
VKLYAATMFPGFFLALLYLAYVLGWAMLNPKIAPSLPEEQTRVPVPPWMKRFAELYSPNM
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHH
LAGLLVALVSPSRALGIEAGEGRLTYFKIIKNIVAACVPLLLTVSTFGLVWWYVVIHQQA
HHHHHHHHHCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AASEAPEGLEELGAPVADAGPATVGGPATGFYIWFGLAAAVAAVPLVRYYRRMTAERLQV
HHCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VKLLASSVMPLALLTVIVLAVILFGITTATESAAVGAAGAFLLALQARTLNWQRTKEAVF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHCCCEEE
LTAKTTAMVCWLFVGSALFSAVFAILGGQALVEQWVLALDLTPIQFMILSQAIIFILGWP
EEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
LEWTEIIIIFVPIFLPMLHHFDIDPILWGVLVFVNLQAAFLSPPVAMSAYYLKGVSPPQV
CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHH
TLNQIFAGMMPYMLIVIVCMIIMYIWPGMTLWLPEYLYG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]