Definition Sinorhizobium medicae WSM419 chromosome, complete genome.
Accession NC_009636
Length 3,781,904

Click here to switch to the map view.

The map label for this gene is 150397089

Identifier: 150397089

GI number: 150397089

Start: 1955636

End: 1956673

Strand: Reverse

Name: 150397089

Synonym: Smed_1887

Alternate gene names: NA

Gene position: 1956673-1955636 (Counterclockwise)

Preceding gene: 150397090

Following gene: 150397088

Centisome position: 51.74

GC content: 63.87

Gene sequence:

>1038_bases
ATGACATTGGACGAGTTGCTGTCCACCTATGAGCCGCGCCTTGCCGCGGCATTTCGAGAAGCGATCGAGACGATCAAGTC
GACGGCTGTTCTCGCCCGCGTGGTCGAGCGTCTCGATCGTGGTGACGTTAACGGTGCTGTTGAGGCCATGCAAATCGAGC
CCGAGGCGTTCTCCGCGCTTGAAATCGCGCTGCAGGAGGCATTCAACGCCGGCGGCACCAATGCTGTCGGCGAGTTGCCG
AAGGTCATGGACCCACAGGGCAATCGCGTGATTTGGCGTTTCGGCGTCCGCAACCCTGCTGCCGAGGCGATCCTGCGACA
CCTATCCTCGACGATGGTCACGCACATCACCGATGACCAGCGGCAGGGCATCCGCCAGGCGCTGGAGCAGGGGCTTGCCA
GAGGCGCCAGCCCGAGATTGACTGCACTCGATGTTGTCGGCCGGCAGAGCCGTGTCACCGGCCGCCGAGAGGGCGGTGTG
ATCGGTCTGACCCGATACCAGATAGAGTTCATCGAGCGGGCGCGCCTGCATCTTGCTTCCGGCGACGCGGAGCAGATGAA
CCGGTACTTCGAGCTCAAGACGCGCGACAAGCGCTTCGACAGGACCGTCATGGCCGCGGTTAGGGCGGGCAAGCCGGTCA
CCGGCGAGGCCCTCACCAAGATAGTTGGCCGGTTGCGCGACAAGAACCTGCTTCTCCGCGGCGAGATGTTGGCGCGGACC
GAAACGATGATGGCGCTCAGCTCCGCCCGCGACGAGACAATGCGGCAGCAGATCGAGGCAGGCAAGGTCGAAGCACGGGA
TATCACGAAGGTATGGCGGTCCGCCGGCGACAGCCGTGTGCGGCACACCCATCGTGTCCTCAACGGCAAGAGCGTCGGGA
TGGATGAGGTATTTCAGAGCCCATCTGGCGCGCTTCTCCGGTTCCCGGGCGACCCGCGCGCGCCGATATCGGAGATTTCC
GGCTGCCGGTGCAGGCTCGAATACAAGGTGGATCACATCGGTGCGGTTGTGCGCCGGTACCGGGCAGAGGTCGTATGA

Upstream 100 bases:

>100_bases
GCACGTCTCGCTGAGCAATTTCGGGAGCCAAGAAGCGGCCATTACTCCGCCTGCAGGTTGGCATTAGGTACTTGGAAGCA
GTTCTGCGAAAGGCAACCGC

Downstream 100 bases:

>100_bases
TGGCAACGCTCTCCTTTAGCGCTGCCGTGGCGCAGTGGGCTGACAAGGTCGAGGGTGCAGTCGAAGCCATCTTCAAGGAG
GCGACACACGAGGTCGTCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 344

Protein sequence:

>345_residues
MTLDELLSTYEPRLAAAFREAIETIKSTAVLARVVERLDRGDVNGAVEAMQIEPEAFSALEIALQEAFNAGGTNAVGELP
KVMDPQGNRVIWRFGVRNPAAEAILRHLSSTMVTHITDDQRQGIRQALEQGLARGASPRLTALDVVGRQSRVTGRREGGV
IGLTRYQIEFIERARLHLASGDAEQMNRYFELKTRDKRFDRTVMAAVRAGKPVTGEALTKIVGRLRDKNLLLRGEMLART
ETMMALSSARDETMRQQIEAGKVEARDITKVWRSAGDSRVRHTHRVLNGKSVGMDEVFQSPSGALLRFPGDPRAPISEIS
GCRCRLEYKVDHIGAVVRRYRAEVV

Sequences:

>Translated_345_residues
MTLDELLSTYEPRLAAAFREAIETIKSTAVLARVVERLDRGDVNGAVEAMQIEPEAFSALEIALQEAFNAGGTNAVGELP
KVMDPQGNRVIWRFGVRNPAAEAILRHLSSTMVTHITDDQRQGIRQALEQGLARGASPRLTALDVVGRQSRVTGRREGGV
IGLTRYQIEFIERARLHLASGDAEQMNRYFELKTRDKRFDRTVMAAVRAGKPVTGEALTKIVGRLRDKNLLLRGEMLART
ETMMALSSARDETMRQQIEAGKVEARDITKVWRSAGDSRVRHTHRVLNGKSVGMDEVFQSPSGALLRFPGDPRAPISEIS
GCRCRLEYKVDHIGAVVRRYRAEVV
>Mature_344_residues
TLDELLSTYEPRLAAAFREAIETIKSTAVLARVVERLDRGDVNGAVEAMQIEPEAFSALEIALQEAFNAGGTNAVGELPK
VMDPQGNRVIWRFGVRNPAAEAILRHLSSTMVTHITDDQRQGIRQALEQGLARGASPRLTALDVVGRQSRVTGRREGGVI
GLTRYQIEFIERARLHLASGDAEQMNRYFELKTRDKRFDRTVMAAVRAGKPVTGEALTKIVGRLRDKNLLLRGEMLARTE
TMMALSSARDETMRQQIEAGKVEARDITKVWRSAGDSRVRHTHRVLNGKSVGMDEVFQSPSGALLRFPGDPRAPISEISG
CRCRLEYKVDHIGAVVRRYRAEVV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38343; Mature: 38211

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLDELLSTYEPRLAAAFREAIETIKSTAVLARVVERLDRGDVNGAVEAMQIEPEAFSAL
CCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEEECHHHHHHH
EIALQEAFNAGGTNAVGELPKVMDPQGNRVIWRFGVRNPAAEAILRHLSSTMVTHITDDQ
HHHHHHHHCCCCCCHHHCCCHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCHH
RQGIRQALEQGLARGASPRLTALDVVGRQSRVTGRREGGVIGLTRYQIEFIERARLHLAS
HHHHHHHHHHHHHCCCCCCCHHHHHHCCHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHCC
GDAEQMNRYFELKTRDKRFDRTVMAAVRAGKPVTGEALTKIVGRLRDKNLLLRGEMLART
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEHHHHHHHH
ETMMALSSARDETMRQQIEAGKVEARDITKVWRSAGDSRVRHTHRVLNGKSVGMDEVFQS
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHCC
PSGALLRFPGDPRAPISEISGCRCRLEYKVDHIGAVVRRYRAEVV
CCCCEEECCCCCCCCHHHCCCCEEEEEECHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TLDELLSTYEPRLAAAFREAIETIKSTAVLARVVERLDRGDVNGAVEAMQIEPEAFSAL
CHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEEECHHHHHHH
EIALQEAFNAGGTNAVGELPKVMDPQGNRVIWRFGVRNPAAEAILRHLSSTMVTHITDDQ
HHHHHHHHCCCCCCHHHCCCHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCHH
RQGIRQALEQGLARGASPRLTALDVVGRQSRVTGRREGGVIGLTRYQIEFIERARLHLAS
HHHHHHHHHHHHHCCCCCCCHHHHHHCCHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHCC
GDAEQMNRYFELKTRDKRFDRTVMAAVRAGKPVTGEALTKIVGRLRDKNLLLRGEMLART
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEHHHHHHHH
ETMMALSSARDETMRQQIEAGKVEARDITKVWRSAGDSRVRHTHRVLNGKSVGMDEVFQS
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHCC
PSGALLRFPGDPRAPISEISGCRCRLEYKVDHIGAVVRRYRAEVV
CCCCEEECCCCCCCCHHHCCCCEEEEEECHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA