| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is 150397076
Identifier: 150397076
GI number: 150397076
Start: 1945435
End: 1948092
Strand: Reverse
Name: 150397076
Synonym: Smed_1874
Alternate gene names: NA
Gene position: 1948092-1945435 (Counterclockwise)
Preceding gene: 150397077
Following gene: 150397075
Centisome position: 51.51
GC content: 63.09
Gene sequence:
>2658_bases ATGGCAATCTTTACAGGAATCGCCACGGCGATCGCCGGCGCGCTGTTCGGCGGCTCTACGCTTGCCACCAGCCTGATCGG CGGCGCGCTCGCCTTCGGCGCGAAGTTTGCCGTGGGCAAGCTCACCCAGCAGAGACAGGGCAAGCAGAAGCACACGGCCG TCCAGGGCGAGATCCAGTTCGGCGGCGACGTGCCGGTCGGCACTCTCTACGGCGTCGGCAAGACCAAGGGCCAGCGCGCC TTCTATGCCAAGTGGGACAAGGGCAACAAGCGCAATGCCGAAGTCTTCATCCTCGCCAACGGCTGGTGCGACGGGCTGGA GCCGTACGTCTATATTTATGGCGAGAAATACAATCTCGTGGCGCAGGCGACGATCGGCAACGAGGTCGCGCGTTACGGCG TCCAGGGCTTCATCGACGGCGACGGCAACAGCGCGATCTCGATCCGCTTCTATGACGGCCGCCCGGGACAGGGCGTCGAT CAGCGCCTCGTCGATGTGACGGCCAACCTCGGCAATAAGTGGAAGGCGACCAGCAAGCTTTCGGGCATGTGCTATGTCGT CGTCGAGCGCTACTATCACCTCGAATTCTTCCGTGACGCCGGCAAGGGCAAGCCGGACATCGATTTCGTGCTGCGCGGGC TTCGCGAATACGACCCGCGTAAGGACTCGACGGTTGCCGGTGGCTCCGGGACGCAGCGGCTCACCATGCCCTCGACCTGG GTGCACACGAAAAACCCGGCCTTGCACCGGCTGAACTACCAGCTGGGCCTTCGCGCGCTGGTCTCTGGCCGCACGCTGAT CGGCGAGGGCAAGAGCCTCGGCCAGATCGATCTCGCCACCTATTTCGTGGCGATGAACGTCTGCGACACTCTGCGCAGCA ACGGCAAGAAGACCTATGAGTGCTCTGTCTTCGTCAGTGGCGACGATGATCACACCGAGGTGCTGAAGCAGTTTGATGAC GCGATGGCCGGCTATGGGCTTAACCGCCGCGGCCTTTCCGGCGTCATTCCCGGTGCACCGCAGATCCCGGTCAAGGACCT GACTGCAGCCGACATCCCGATCGACCGCGCCAAGGACGTGCAGTTCCGGCCTTCGGCTTTCGAGCGCTTCAACCACCTTT CCGGCCAGTTCACCTCGATCGAGTCGATGTGGAACCCGGAGAGCCTGAAGCCGGTCTATGTGAATGCGGACATCGCCGCC GACGGCCGTAACCGGCAGACGAGCATCGATTTCCTGCAGGTGACCGATCCGGACATCGCGCAATATCTGCTCAATATCCG CTATCGGCAGAACCGCATGGGCGGCAAGGCGACGGTTCCCGTCAGCCGTCGCTTTGGTCTGGCGGTACAGGAAGGCGAGT GGATCACCTGGCGTGGCAAGACCTGGCTGATCAGTGAATGGCGGGCGGACGAGCGGCTGCGCATCACGCTGGTGCTTTCG GAGACCAGTGCGGCGATCTATGACGACGACGGCATCGAGCCCGGCCCAATCGTCGTGCCGCCGACGCCGCCGATCAATCC GTCGCTGCTCTCGACCGTGCAGAACTTCAATGTTGCCGTCGGCATGATCAACGGCGCGCAGGGCTATGATACGCCGGCGC TCGTCTTCACCTGGACGCCGCCGGATGATCCGACAATCACCGCCGTGCGTTTCGTCTACCAGATCGAGGGCACGACAGAG ATCTTCGAGGATCAGTGCACCTCGCCCGAGGACGGCAGCTTCCGCACCACGAAGAACGTCGTTTCCGGCAAAGTCTATAA CGCCCGGGCGACGATCACGACCGTGCCCGACCGGCTGCGCACCTTCACGCCCTGGATGACGACGGCGCAGCCGACCGGCT TGCAGACGCTGCTGACCGGCTTGCAACAGCTGCAGGACGATGCGCTGAACCGCTTCAAGGAACTGCAGCAGGAGATGGAC GAATTCTTCCGGCCGCGCCTGGTCGAGCTGCTGGATGCTTTCTCGCTTGAGGGTGCTGTCGGACAGATCGAGCGCCAGCA GATCGTTGCCACCATAGGTGACGCGCTGGCGCAGATCACCGAGGAGCGCCGGGTTCGCGTTTCCGAGAACGAGGCGATGG CGCAGTTGCTCACCTACCTGCAGGCGAGCCTCGGCGGCACAAGTGCGCGGCTGATCACCGAGGAGACCGTGCGCGCAACG ACGGACAGCGCCCTCGCAAGCTCGATCACAACACTCGACGCTGAAGTCGATGGCAACCTCGCCCGCCTGATCGCCGAGGA GACCGCTCGCGCAGACGGCGACGGCGCGCTTGCGACCAGCATCAGCGGCGTGAGCGCTGATTTCAACGGCCGGTTCGCAC AAGGGCTGGTGAAGTTCGAGGCGGTCGCGGCGCCGACCGGCGTTGATGCCCGTTTCTCGGTGTTGCTGCGGACCGGGACC AACCAGAGCTTCAAGGTGTCGGGTTTCTATGTCGAGCTTTACACCGAAGGCGGTGTGCAGAAGTCGCGCATGGCCGTGCA GGCGGATCAGTTCCTCGTCACGTCAGGCAACAGCCGCCACTACCCACTCGTCTTCGAAGACGGAGAGTTGAAGCTGGCCG TTGCCAACATCGGCACGGTCAATGCCGGTCTTCTTCAGTCGCTGAACGGCAAAATGAAAATCGACCTCAACAACGGCACG ATCGAGATCTTCAGCTGA
Upstream 100 bases:
>100_bases CGTCTGCCTCGGCGCCCGTTTCGTCACCAAGACCGAACGCGGCCGCAGCGATAAAGGCCTCGCCGACACCATTGCCGCCT TTCATCTCGGATAATTCATC
Downstream 100 bases:
>100_bases TGACCAGGACAATGATTGGCGTCGACTCGACCGGCGCCGGCTGCATCAAGATCATGAAGAATGACGCCGACAATCCGCGC ACGACGCCGGACAGCCAGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 885; Mature: 884
Protein sequence:
>885_residues MAIFTGIATAIAGALFGGSTLATSLIGGALAFGAKFAVGKLTQQRQGKQKHTAVQGEIQFGGDVPVGTLYGVGKTKGQRA FYAKWDKGNKRNAEVFILANGWCDGLEPYVYIYGEKYNLVAQATIGNEVARYGVQGFIDGDGNSAISIRFYDGRPGQGVD QRLVDVTANLGNKWKATSKLSGMCYVVVERYYHLEFFRDAGKGKPDIDFVLRGLREYDPRKDSTVAGGSGTQRLTMPSTW VHTKNPALHRLNYQLGLRALVSGRTLIGEGKSLGQIDLATYFVAMNVCDTLRSNGKKTYECSVFVSGDDDHTEVLKQFDD AMAGYGLNRRGLSGVIPGAPQIPVKDLTAADIPIDRAKDVQFRPSAFERFNHLSGQFTSIESMWNPESLKPVYVNADIAA DGRNRQTSIDFLQVTDPDIAQYLLNIRYRQNRMGGKATVPVSRRFGLAVQEGEWITWRGKTWLISEWRADERLRITLVLS ETSAAIYDDDGIEPGPIVVPPTPPINPSLLSTVQNFNVAVGMINGAQGYDTPALVFTWTPPDDPTITAVRFVYQIEGTTE IFEDQCTSPEDGSFRTTKNVVSGKVYNARATITTVPDRLRTFTPWMTTAQPTGLQTLLTGLQQLQDDALNRFKELQQEMD EFFRPRLVELLDAFSLEGAVGQIERQQIVATIGDALAQITEERRVRVSENEAMAQLLTYLQASLGGTSARLITEETVRAT TDSALASSITTLDAEVDGNLARLIAEETARADGDGALATSISGVSADFNGRFAQGLVKFEAVAAPTGVDARFSVLLRTGT NQSFKVSGFYVELYTEGGVQKSRMAVQADQFLVTSGNSRHYPLVFEDGELKLAVANIGTVNAGLLQSLNGKMKIDLNNGT IEIFS
Sequences:
>Translated_885_residues MAIFTGIATAIAGALFGGSTLATSLIGGALAFGAKFAVGKLTQQRQGKQKHTAVQGEIQFGGDVPVGTLYGVGKTKGQRA FYAKWDKGNKRNAEVFILANGWCDGLEPYVYIYGEKYNLVAQATIGNEVARYGVQGFIDGDGNSAISIRFYDGRPGQGVD QRLVDVTANLGNKWKATSKLSGMCYVVVERYYHLEFFRDAGKGKPDIDFVLRGLREYDPRKDSTVAGGSGTQRLTMPSTW VHTKNPALHRLNYQLGLRALVSGRTLIGEGKSLGQIDLATYFVAMNVCDTLRSNGKKTYECSVFVSGDDDHTEVLKQFDD AMAGYGLNRRGLSGVIPGAPQIPVKDLTAADIPIDRAKDVQFRPSAFERFNHLSGQFTSIESMWNPESLKPVYVNADIAA DGRNRQTSIDFLQVTDPDIAQYLLNIRYRQNRMGGKATVPVSRRFGLAVQEGEWITWRGKTWLISEWRADERLRITLVLS ETSAAIYDDDGIEPGPIVVPPTPPINPSLLSTVQNFNVAVGMINGAQGYDTPALVFTWTPPDDPTITAVRFVYQIEGTTE IFEDQCTSPEDGSFRTTKNVVSGKVYNARATITTVPDRLRTFTPWMTTAQPTGLQTLLTGLQQLQDDALNRFKELQQEMD EFFRPRLVELLDAFSLEGAVGQIERQQIVATIGDALAQITEERRVRVSENEAMAQLLTYLQASLGGTSARLITEETVRAT TDSALASSITTLDAEVDGNLARLIAEETARADGDGALATSISGVSADFNGRFAQGLVKFEAVAAPTGVDARFSVLLRTGT NQSFKVSGFYVELYTEGGVQKSRMAVQADQFLVTSGNSRHYPLVFEDGELKLAVANIGTVNAGLLQSLNGKMKIDLNNGT IEIFS >Mature_884_residues AIFTGIATAIAGALFGGSTLATSLIGGALAFGAKFAVGKLTQQRQGKQKHTAVQGEIQFGGDVPVGTLYGVGKTKGQRAF YAKWDKGNKRNAEVFILANGWCDGLEPYVYIYGEKYNLVAQATIGNEVARYGVQGFIDGDGNSAISIRFYDGRPGQGVDQ RLVDVTANLGNKWKATSKLSGMCYVVVERYYHLEFFRDAGKGKPDIDFVLRGLREYDPRKDSTVAGGSGTQRLTMPSTWV HTKNPALHRLNYQLGLRALVSGRTLIGEGKSLGQIDLATYFVAMNVCDTLRSNGKKTYECSVFVSGDDDHTEVLKQFDDA MAGYGLNRRGLSGVIPGAPQIPVKDLTAADIPIDRAKDVQFRPSAFERFNHLSGQFTSIESMWNPESLKPVYVNADIAAD GRNRQTSIDFLQVTDPDIAQYLLNIRYRQNRMGGKATVPVSRRFGLAVQEGEWITWRGKTWLISEWRADERLRITLVLSE TSAAIYDDDGIEPGPIVVPPTPPINPSLLSTVQNFNVAVGMINGAQGYDTPALVFTWTPPDDPTITAVRFVYQIEGTTEI FEDQCTSPEDGSFRTTKNVVSGKVYNARATITTVPDRLRTFTPWMTTAQPTGLQTLLTGLQQLQDDALNRFKELQQEMDE FFRPRLVELLDAFSLEGAVGQIERQQIVATIGDALAQITEERRVRVSENEAMAQLLTYLQASLGGTSARLITEETVRATT DSALASSITTLDAEVDGNLARLIAEETARADGDGALATSISGVSADFNGRFAQGLVKFEAVAAPTGVDARFSVLLRTGTN QSFKVSGFYVELYTEGGVQKSRMAVQADQFLVTSGNSRHYPLVFEDGELKLAVANIGTVNAGLLQSLNGKMKIDLNNGTI EIFS
Specific function: Unknown
COG id: COG4733
COG function: function code S; Phage-related protein, tail component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 96543; Mature: 96412
Theoretical pI: Translated: 5.43; Mature: 5.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIFTGIATAIAGALFGGSTLATSLIGGALAFGAKFAVGKLTQQRQGKQKHTAVQGEIQF CEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHCEEEEEEEE GGDVPVGTLYGVGKTKGQRAFYAKWDKGNKRNAEVFILANGWCDGLEPYVYIYGEKYNLV CCCCCCCEEEECCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCCCEEEEEECCEEEE AQATIGNEVARYGVQGFIDGDGNSAISIRFYDGRPGQGVDQRLVDVTANLGNKWKATSKL EEEHHHHHHHHCCCCEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCEECCHHH SGMCYVVVERYYHLEFFRDAGKGKPDIDFVLRGLREYDPRKDSTVAGGSGTQRLTMPSTW CCEEEEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCEEEECCCCE VHTKNPALHRLNYQLGLRALVSGRTLIGEGKSLGQIDLATYFVAMNVCDTLRSNGKKTYE EECCCCHHEEEEHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE CSVFVSGDDDHTEVLKQFDDAMAGYGLNRRGLSGVIPGAPQIPVKDLTAADIPIDRAKDV EEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC QFRPSAFERFNHLSGQFTSIESMWNPESLKPVYVNADIAADGRNRQTSIDFLQVTDPDIA EECCHHHHHHHHCCCCEEEHHHCCCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCHHHH QYLLNIRYRQNRMGGKATVPVSRRFGLAVQEGEWITWRGKTWLISEWRADERLRITLVLS HHHHHHHHHHCCCCCEEECCCHHHCCEEEECCCEEEECCCEEEEECCCCCCEEEEEEEEE ETSAAIYDDDGIEPGPIVVPPTPPINPSLLSTVQNFNVAVGMINGAQGYDTPALVFTWTP CCCEEEECCCCCCCCCEEECCCCCCCHHHHHHHHCCEEEEEEEECCCCCCCCEEEEEECC PDDPTITAVRFVYQIEGTTEIFEDQCTSPEDGSFRTTKNVVSGKVYNARATITTVPDRLR CCCCCEEEEEEEEEECCCHHHHHHCCCCCCCCCCEEHHHHHCCEEEECEEEEEECCHHHH TFTPWMTTAQPTGLQTLLTGLQQLQDDALNRFKELQQEMDEFFRPRLVELLDAFSLEGAV HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH GQIERQQIVATIGDALAQITEERRVRVSENEAMAQLLTYLQASLGGTSARLITEETVRAT HHHHHHHHHHHHHHHHHHHHHHHCEEECCHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHC TDSALASSITTLDAEVDGNLARLIAEETARADGDGALATSISGVSADFNGRFAQGLVKFE HHHHHHHHHEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHH AVAAPTGVDARFSVLLRTGTNQSFKVSGFYVELYTEGGVQKSRMAVQADQFLVTSGNSRH EEECCCCCCCEEEEEEEECCCCCEEEEEEEEEEEECCCCCHHHEEEEECEEEEECCCCCC YPLVFEDGELKLAVANIGTVNAGLLQSLNGKMKIDLNNGTIEIFS CCEEEECCCEEEEEEECCCCCHHHHHHCCCEEEEEECCCEEEEEC >Mature Secondary Structure AIFTGIATAIAGALFGGSTLATSLIGGALAFGAKFAVGKLTQQRQGKQKHTAVQGEIQF EEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHCEEEEEEEE GGDVPVGTLYGVGKTKGQRAFYAKWDKGNKRNAEVFILANGWCDGLEPYVYIYGEKYNLV CCCCCCCEEEECCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCCCEEEEEECCEEEE AQATIGNEVARYGVQGFIDGDGNSAISIRFYDGRPGQGVDQRLVDVTANLGNKWKATSKL EEEHHHHHHHHCCCCEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCEECCHHH SGMCYVVVERYYHLEFFRDAGKGKPDIDFVLRGLREYDPRKDSTVAGGSGTQRLTMPSTW CCEEEEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCEEEECCCCE VHTKNPALHRLNYQLGLRALVSGRTLIGEGKSLGQIDLATYFVAMNVCDTLRSNGKKTYE EECCCCHHEEEEHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE CSVFVSGDDDHTEVLKQFDDAMAGYGLNRRGLSGVIPGAPQIPVKDLTAADIPIDRAKDV EEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC QFRPSAFERFNHLSGQFTSIESMWNPESLKPVYVNADIAADGRNRQTSIDFLQVTDPDIA EECCHHHHHHHHCCCCEEEHHHCCCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCHHHH QYLLNIRYRQNRMGGKATVPVSRRFGLAVQEGEWITWRGKTWLISEWRADERLRITLVLS HHHHHHHHHHCCCCCEEECCCHHHCCEEEECCCEEEECCCEEEEECCCCCCEEEEEEEEE ETSAAIYDDDGIEPGPIVVPPTPPINPSLLSTVQNFNVAVGMINGAQGYDTPALVFTWTP CCCEEEECCCCCCCCCEEECCCCCCCHHHHHHHHCCEEEEEEEECCCCCCCCEEEEEECC PDDPTITAVRFVYQIEGTTEIFEDQCTSPEDGSFRTTKNVVSGKVYNARATITTVPDRLR CCCCCEEEEEEEEEECCCHHHHHHCCCCCCCCCCEEHHHHHCCEEEECEEEEEECCHHHH TFTPWMTTAQPTGLQTLLTGLQQLQDDALNRFKELQQEMDEFFRPRLVELLDAFSLEGAV HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH GQIERQQIVATIGDALAQITEERRVRVSENEAMAQLLTYLQASLGGTSARLITEETVRAT HHHHHHHHHHHHHHHHHHHHHHHCEEECCHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHC TDSALASSITTLDAEVDGNLARLIAEETARADGDGALATSISGVSADFNGRFAQGLVKFE HHHHHHHHHEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHH AVAAPTGVDARFSVLLRTGTNQSFKVSGFYVELYTEGGVQKSRMAVQADQFLVTSGNSRH EEECCCCCCCEEEEEEEECCCCCEEEEEEEEEEEECCCCCHHHEEEEECEEEEECCCCCC YPLVFEDGELKLAVANIGTVNAGLLQSLNGKMKIDLNNGTIEIFS CCEEEECCCEEEEEEECCCCCHHHHHHCCCEEEEEECCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA