Click here to switch to the map view.

The map label for this gene is potC [H]

Identifier: 150396921

GI number: 150396921

Start: 1797917

End: 1798702

Strand: Direct

Name: potC [H]

Synonym: Smed_1718

Alternate gene names: 150396921

Gene position: 1797917-1798702 (Clockwise)

Preceding gene: 150396920

Following gene: 150396932

Centisome position: 47.54

GC content: 59.16

Gene sequence:

>786_bases
ATGAAAGCGCTTCCTCTATCCAAGGCAGTATTCGGCTCTGCCGTCGTCGTCTTTCTGATGGCACCACTGTTTGCGATCCT
GCCATTGGCGTTCACGGATAGCGTCTTCCTCAACTACCCGATCCCGAGCTTCTCGCTGAGGTGGTTCGATGAACTGTTCA
CGGCCGATGCCTGGAGGCGCTCGATCATCAACAGCCTGATCATCGGAGCAGGAACGACCGTGCTTGCAACCGTGTTGGGG
ACGGTTGCATCGCTTGGACTTCGCGGCAGGTCCGTATCGCTGCTGTTCGGCTTCTTCCGCACGGTGTTCCTGCTGCCGAT
GGTGGTTCCAGCGGTGGTTCTGGGCGTCGGCATGCAGTTGATGTTTGCACAGTACGGGCTCGCGAACACCTATCTGGGGG
TGATCGTGGCGCATACGGTCATTGCCATTCCGTTTGTGGTGGTCAACGTCACGGCCGCGTTGCAAGGCATCGATCACCGG
CTCGAAAACGCTGCCGCGAGCCTTGGGGCACCGCCGATCGTGGTCCTCAGGAGAGTCACGCTGCCCCTGGCAATGCCGGG
CATCATTTCAGGAGCAGTCTTTGCGTTTGCGACCTCGCTTGATGAGGTGGTGCTGACGTTGTTTGTCGCGGGTCCCAACC
AGAGAACCGTCGCACGGCAGATGTTCTCCACGATCCGCGAAAACATCAGCCCCGCCATCGCTGCAGCCGCATTCCTGTTC
ATCGCAGGAACCGTTGTGATCGCGGCCCTGGTTTATCTCGTCCGACGGAGAAACCAGATCGCTTAG

Upstream 100 bases:

>100_bases
CCAACTGGGGCATGGCCGGCGCGCTCGGAATCGTTCTGCTGACCGCCACGATCATTCTGTATGTCGTGTATTTGCGGCTC
TCATCCGAGGAGGCAAAGGC

Downstream 100 bases:

>100_bases
GAAGGCTTATGCGCCAAAAAAGGCCCCGGAAAAGCACTCCGGGGCCCTGTCTCGTCAAAAGTTCCGACAGCGGCTCAGAT
CTTGCCGTTGCGCTGCTGGA

Product: binding-protein-dependent transport systems inner membrane component

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MKALPLSKAVFGSAVVVFLMAPLFAILPLAFTDSVFLNYPIPSFSLRWFDELFTADAWRRSIINSLIIGAGTTVLATVLG
TVASLGLRGRSVSLLFGFFRTVFLLPMVVPAVVLGVGMQLMFAQYGLANTYLGVIVAHTVIAIPFVVVNVTAALQGIDHR
LENAAASLGAPPIVVLRRVTLPLAMPGIISGAVFAFATSLDEVVLTLFVAGPNQRTVARQMFSTIRENISPAIAAAAFLF
IAGTVVIAALVYLVRRRNQIA

Sequences:

>Translated_261_residues
MKALPLSKAVFGSAVVVFLMAPLFAILPLAFTDSVFLNYPIPSFSLRWFDELFTADAWRRSIINSLIIGAGTTVLATVLG
TVASLGLRGRSVSLLFGFFRTVFLLPMVVPAVVLGVGMQLMFAQYGLANTYLGVIVAHTVIAIPFVVVNVTAALQGIDHR
LENAAASLGAPPIVVLRRVTLPLAMPGIISGAVFAFATSLDEVVLTLFVAGPNQRTVARQMFSTIRENISPAIAAAAFLF
IAGTVVIAALVYLVRRRNQIA
>Mature_261_residues
MKALPLSKAVFGSAVVVFLMAPLFAILPLAFTDSVFLNYPIPSFSLRWFDELFTADAWRRSIINSLIIGAGTTVLATVLG
TVASLGLRGRSVSLLFGFFRTVFLLPMVVPAVVLGVGMQLMFAQYGLANTYLGVIVAHTVIAIPFVVVNVTAALQGIDHR
LENAAASLGAPPIVVLRRVTLPLAMPGIISGAVFAFATSLDEVVLTLFVAGPNQRTVARQMFSTIRENISPAIAAAAFLF
IAGTVVIAALVYLVRRRNQIA

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=237, Percent_Identity=27.8481012658228, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1787081, Length=258, Percent_Identity=31.3953488372093, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1786980, Length=113, Percent_Identity=38.0530973451327, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787714, Length=209, Percent_Identity=32.0574162679426, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 27804; Mature: 27804

Theoretical pI: Translated: 11.53; Mature: 11.53

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]