Click here to switch to the map view.

The map label for this gene is yncC [C]

Identifier: 150396911

GI number: 150396911

Start: 1786655

End: 1787290

Strand: Direct

Name: yncC [C]

Synonym: Smed_1708

Alternate gene names: 150396911

Gene position: 1786655-1787290 (Clockwise)

Preceding gene: 150396901

Following gene: 150396914

Centisome position: 47.24

GC content: 61.79

Gene sequence:

>636_bases
ATGACAAAGCTGCTCAGCCCCATTCAGCGTTCGCGTACCATTTCGGAGGAAGTGGAGGAGCGACTCGTCCTGGCAATCGC
AAGCGGCGAGCAGGCCGCCGGATCCCGCCTCACAGAGGGCAGTGTCGCCGAAGCCATGGGCGTGAGCCGGGTTCCGGCAC
GCGAAGCTATCTTGAGCCTAGCGGCAAAAGGCCTGCTGACATCGGCCGGTGCGCGCGGCTTGAAGGTCGTGGATTTTGGT
CGGGGGCAAGCTGCAAAAGTTCGCGAGGTTCGCCTTGCTTTGGAAGCCGTGGCAATCCGCCATGCCATAGCCGCAGTCCG
AGCCGACCCGGATGCACTACGGCCGCTGGACGAGGTACTCGCGCGTATGGAACAGCTGACCAGAGCCCCGAGCGCCATCG
CCCTTGCGAAGTGCGATCTTGAGTTTCACCGCACCATTCTAGGCTATTCCCGCAACGACGTGCTGGTTCGGTCATGGGAG
GCGCTGACGCCGCATTTACTTGTCCTGTTCTGCAAGGACTGGCACACCCACCCCGATGGCGTCGGCGAAGTGAAACTGCA
CGACGATCTGCGTACATTCATCTCAAAGGGCGGCGAGCGCGACATCGAGCAGGTGCTGGGCAACCATTTCTCCTGA

Upstream 100 bases:

>100_bases
TCAATCCTCCTATCGACGCGCGCGACGGATCACGTGCAATAGCGATGGCTTCCTATACAGAATACGGTATACTATAGTCA
ATCACCATGGAAAGACTCCT

Downstream 100 bases:

>100_bases
ACCGCCCGATAGTCGTGGTCACCCGTGAGCGCCTGAGGGGTCTTCCCCGGATCGGCCACGATCGGGGGAAGACGGGGTAT
CGCTCAATAAGCCGAGGCAA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MTKLLSPIQRSRTISEEVEERLVLAIASGEQAAGSRLTEGSVAEAMGVSRVPAREAILSLAAKGLLTSAGARGLKVVDFG
RGQAAKVREVRLALEAVAIRHAIAAVRADPDALRPLDEVLARMEQLTRAPSAIALAKCDLEFHRTILGYSRNDVLVRSWE
ALTPHLLVLFCKDWHTHPDGVGEVKLHDDLRTFISKGGERDIEQVLGNHFS

Sequences:

>Translated_211_residues
MTKLLSPIQRSRTISEEVEERLVLAIASGEQAAGSRLTEGSVAEAMGVSRVPAREAILSLAAKGLLTSAGARGLKVVDFG
RGQAAKVREVRLALEAVAIRHAIAAVRADPDALRPLDEVLARMEQLTRAPSAIALAKCDLEFHRTILGYSRNDVLVRSWE
ALTPHLLVLFCKDWHTHPDGVGEVKLHDDLRTFISKGGERDIEQVLGNHFS
>Mature_210_residues
TKLLSPIQRSRTISEEVEERLVLAIASGEQAAGSRLTEGSVAEAMGVSRVPAREAILSLAAKGLLTSAGARGLKVVDFGR
GQAAKVREVRLALEAVAIRHAIAAVRADPDALRPLDEVLARMEQLTRAPSAIALAKCDLEFHRTILGYSRNDVLVRSWEA
LTPHLLVLFCKDWHTHPDGVGEVKLHDDLRTFISKGGERDIEQVLGNHFS

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22955; Mature: 22824

Theoretical pI: Translated: 7.71; Mature: 7.71

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKLLSPIQRSRTISEEVEERLVLAIASGEQAAGSRLTEGSVAEAMGVSRVPAREAILSL
CCHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHCCCCCCCHHHHHHCCCCCCHHHHHHHH
AAKGLLTSAGARGLKVVDFGRGQAAKVREVRLALEAVAIRHAIAAVRADPDALRPLDEVL
HHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHH
ARMEQLTRAPSAIALAKCDLEFHRTILGYSRNDVLVRSWEALTPHLLVLFCKDWHTHPDG
HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCC
VGEVKLHDDLRTFISKGGERDIEQVLGNHFS
CCCEEEHHHHHHHHHCCCCCHHHHHHCCCCC
>Mature Secondary Structure 
TKLLSPIQRSRTISEEVEERLVLAIASGEQAAGSRLTEGSVAEAMGVSRVPAREAILSL
CHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHCCCCCCCHHHHHHCCCCCCHHHHHHHH
AAKGLLTSAGARGLKVVDFGRGQAAKVREVRLALEAVAIRHAIAAVRADPDALRPLDEVL
HHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHH
ARMEQLTRAPSAIALAKCDLEFHRTILGYSRNDVLVRSWEALTPHLLVLFCKDWHTHPDG
HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCC
VGEVKLHDDLRTFISKGGERDIEQVLGNHFS
CCCEEEHHHHHHHHHCCCCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA