Click here to switch to the map view.

The map label for this gene is rci [H]

Identifier: 150396831

GI number: 150396831

Start: 1717608

End: 1718693

Strand: Direct

Name: rci [H]

Synonym: Smed_1622

Alternate gene names: 150396831

Gene position: 1717608-1718693 (Clockwise)

Preceding gene: 150396829

Following gene: 150396834

Centisome position: 45.42

GC content: 57.09

Gene sequence:

>1086_bases
ATGGGCACGATAACCGAGCGAAAAAGCAAGAACGGGAAGAAATCTTATACAGCGCAGATCCGCTTAAAGCGAGATAAGGT
GGTCGTCCATTCGGAATCACAGACGTTCGAGCGCAAGGCAGTGGCAACCGCTTGGATAAAGAAGAGGGAAACCGAGCTAA
GGGAACCGGGCGCCATCGACCGCCTGAAAGAGAATTCCACCCTCGCCCACGCCATCGATCGCTATATCAAAGAGAGCAAG
AAAAAGATCGGCCGGACCAAGGCGCAGGTGCTCGCCAAGATCAAGGACGAGTTCGAAATCGCCAACATGGCATGCAAGGA
AATTGAGAGCGCCGACATCGTCAAGTTCGCCACGGAGCTCTCTCACGGGCGACAGCCCCAGACGGTCGGCAACTACATTT
CGCACCTGTCCAGCATTTTCGCAATCGCTCGGCCGGCGTGGAAGATCGATCTGGACTATTCGGCGATGGAGGACGCCCAG
GTTGTGCTGAAGCGTCTAGGCCTGATAGCGAAATCGACGCAGCGCGACCGTCGCCCCACGCTCGAGGAGCTTGGGAAGCT
GATGGAGCATTACAGCGATCGCGAGAGCCGCTACGCCGCACACATTCCCATGCGCCGGCTGATCGCCTTCGCGATTTTCT
CGACCCGCCGTCAGGAGGAGATTTCCCGCATCACCTGGTCCGACTATGAGGACGAAAACAAGCGCGTGCTCGTCAGGGAC
ATGAAGAATCCAGGCGAGAAGATCGGTAACGACGTGTGGTGCGATCTACCGCCGGAAGCAATTCGCATAATCGCTGCTAT
GCCACCCACCAAGGTAAAAGAAATCTTCCCCTACGAGGCGAGGAGCGTCAGCGCGTCCTTTACCAGAGCGTGCAGCCTTC
TTGGGATCGAGGATCTGCATTTCCACGATCTGCGTCACGAAGGCGTTTCGCGACTGTTTGAGCTTGGCTGGAATATTCCC
CACGTCGCCACCGTCTCCGGCCACCGCTCCTGGAATTCGCTGAAACGCTACTCTCACATCAAGCAGCGCGGTGACAAGTA
CGAGGGCTGGAAGTGGTTGGACATCGTCGCCCCAGCGAAACAGTAG

Upstream 100 bases:

>100_bases
ATCTTCACGTCACATTTGCTCTCATTTTTACGCTTTCTTGCTCATTTCCGTCGTGCTAGTGCTACATTGTAGCACTTAGA
GAAGGCTGTGTAGCACTCAG

Downstream 100 bases:

>100_bases
TGGTGGTCCCGGAGGGCCCAATTAACGTTTTGAAACGTTTCAGGTTTTCTAACGCTCGTTTCCCTATTTGTTCTCGGGTT
TTCTCGCCGCGTCCCGTATC

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 361; Mature: 360

Protein sequence:

>361_residues
MGTITERKSKNGKKSYTAQIRLKRDKVVVHSESQTFERKAVATAWIKKRETELREPGAIDRLKENSTLAHAIDRYIKESK
KKIGRTKAQVLAKIKDEFEIANMACKEIESADIVKFATELSHGRQPQTVGNYISHLSSIFAIARPAWKIDLDYSAMEDAQ
VVLKRLGLIAKSTQRDRRPTLEELGKLMEHYSDRESRYAAHIPMRRLIAFAIFSTRRQEEISRITWSDYEDENKRVLVRD
MKNPGEKIGNDVWCDLPPEAIRIIAAMPPTKVKEIFPYEARSVSASFTRACSLLGIEDLHFHDLRHEGVSRLFELGWNIP
HVATVSGHRSWNSLKRYSHIKQRGDKYEGWKWLDIVAPAKQ

Sequences:

>Translated_361_residues
MGTITERKSKNGKKSYTAQIRLKRDKVVVHSESQTFERKAVATAWIKKRETELREPGAIDRLKENSTLAHAIDRYIKESK
KKIGRTKAQVLAKIKDEFEIANMACKEIESADIVKFATELSHGRQPQTVGNYISHLSSIFAIARPAWKIDLDYSAMEDAQ
VVLKRLGLIAKSTQRDRRPTLEELGKLMEHYSDRESRYAAHIPMRRLIAFAIFSTRRQEEISRITWSDYEDENKRVLVRD
MKNPGEKIGNDVWCDLPPEAIRIIAAMPPTKVKEIFPYEARSVSASFTRACSLLGIEDLHFHDLRHEGVSRLFELGWNIP
HVATVSGHRSWNSLKRYSHIKQRGDKYEGWKWLDIVAPAKQ
>Mature_360_residues
GTITERKSKNGKKSYTAQIRLKRDKVVVHSESQTFERKAVATAWIKKRETELREPGAIDRLKENSTLAHAIDRYIKESKK
KIGRTKAQVLAKIKDEFEIANMACKEIESADIVKFATELSHGRQPQTVGNYISHLSSIFAIARPAWKIDLDYSAMEDAQV
VLKRLGLIAKSTQRDRRPTLEELGKLMEHYSDRESRYAAHIPMRRLIAFAIFSTRRQEEISRITWSDYEDENKRVLVRDM
KNPGEKIGNDVWCDLPPEAIRIIAAMPPTKVKEIFPYEARSVSASFTRACSLLGIEDLHFHDLRHEGVSRLFELGWNIPH
VATVSGHRSWNSLKRYSHIKQRGDKYEGWKWLDIVAPAKQ

Specific function: Shufflon-specific DNA recombinase [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 41609; Mature: 41478

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: PS00063 ALDOKETO_REDUCTASE_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTITERKSKNGKKSYTAQIRLKRDKVVVHSESQTFERKAVATAWIKKRETELREPGAID
CCCCCCCCCCCCCCCEEEEEEEEECEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCHH
RLKENSTLAHAIDRYIKESKKKIGRTKAQVLAKIKDEFEIANMACKEIESADIVKFATEL
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
SHGRQPQTVGNYISHLSSIFAIARPAWKIDLDYSAMEDAQVVLKRLGLIAKSTQRDRRPT
HCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
LEELGKLMEHYSDRESRYAAHIPMRRLIAFAIFSTRRQEEISRITWSDYEDENKRVLVRD
HHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEC
MKNPGEKIGNDVWCDLPPEAIRIIAAMPPTKVKEIFPYEARSVSASFTRACSLLGIEDLH
CCCCHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHH
FHDLRHEGVSRLFELGWNIPHVATVSGHRSWNSLKRYSHIKQRGDKYEGWKWLDIVAPAK
HHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCC
Q
C
>Mature Secondary Structure 
GTITERKSKNGKKSYTAQIRLKRDKVVVHSESQTFERKAVATAWIKKRETELREPGAID
CCCCCCCCCCCCCCEEEEEEEEECEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCHH
RLKENSTLAHAIDRYIKESKKKIGRTKAQVLAKIKDEFEIANMACKEIESADIVKFATEL
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
SHGRQPQTVGNYISHLSSIFAIARPAWKIDLDYSAMEDAQVVLKRLGLIAKSTQRDRRPT
HCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
LEELGKLMEHYSDRESRYAAHIPMRRLIAFAIFSTRRQEEISRITWSDYEDENKRVLVRD
HHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEC
MKNPGEKIGNDVWCDLPPEAIRIIAAMPPTKVKEIFPYEARSVSASFTRACSLLGIEDLH
CCCCHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHH
FHDLRHEGVSRLFELGWNIPHVATVSGHRSWNSLKRYSHIKQRGDKYEGWKWLDIVAPAK
HHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCC
Q
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3065610; 3029698 [H]