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The map label for this gene is ycjF [C]

Identifier: 150396740

GI number: 150396740

Start: 1617572

End: 1618657

Strand: Direct

Name: ycjF [C]

Synonym: Smed_1530

Alternate gene names: 150396740

Gene position: 1617572-1618657 (Clockwise)

Preceding gene: 150396739

Following gene: 150396741

Centisome position: 42.77

GC content: 65.38

Gene sequence:

>1086_bases
ATGAATGACGATTCCAATGGCCGTCGACGCAGGCCCGCTGCCTTTCCCGTCGGAACGGAAGATGCCACCAGCCGTGAGCT
GGAACAGACACCTCGGCGCGCGCCAGGAAGCTTTAGCGACAAGATCGTCATGACGCCCGACGCCGATGACCCATTCATCG
AAACGACAGCGGCCATCGAGGCCCTCAATCCTCCGGAAGCAAGGCCGCCCCGGCGCAGGCTCTCTTTCGGCAAAATCGCC
GCGGGCGCTTTCGGCATCCTGATCTCGCTTGCGGTCGGGCTTTGGGTCGACCGGCTCGTGCGCGATCTCTTCTCACGCGC
CGACTGGCTTGGCTATGGCGCGGTCGCAGTCGTGGCGATCGGCGCTGCGGCATTCCTGATTGTGGTCGCGCGCGAAATTT
TCGGCATGATGCAGTTGACTGCGGTCCAGGCGCTGAAAGCCGATCTAGCCGCGGCGGCCGTAGCCGGAAAGGCGCAAGCA
GCACGCGCGGCGACGGCGAGGCTCGTTCACCTGCTCGCCGGCAATCCCCGGACAGCAAAGGGCCGCGCCCGCCTGGCGGA
TACCGAGGGCGAAATTATCGATGCGCCTCATCTCGTTGATCTGACCGAGCGCGAATTGCTGGCGCCGCTTGACCGCGAGG
CACGCCGGATCATTCTTGGAGCCGCCAAGCGGGTGTCGATCGTCACTGCCGTTAGCCCGCGCGCGCTCGTGGACCTCGGT
TACGTGCTTTACGAGTCCGCACGGATGATCCGGGCCATGGCGGAACTCTACGGCGGCCGGCCGGGTACGCTCGGCCTGTT
GCGCCTGATGCGCGACGTCGTCGCACATCTCGCCGTAACCGGTTCGATCGCTGTCGGCGACAGCCTCGTCCAGCAGATCT
TGGGCCACGGCCTAGCTTCCAAGCTCTCTGCCCGCCTGGGCGAAGGCGTAATCAACGGGCTGATGACCGCACGGATCGGG
ATTGCGGCGATGGATCTCTGCAGGCCGATGCCGTTCCGGGCGTTGAAGCGCCCCAGCATAGGCGACTTCCTGGCAGACCT
GGCGCCGGGTGCCGGACGAACTGAAAGCGCGACCGGCAAAGCCTAA

Upstream 100 bases:

>100_bases
GGCCGCCGCACCTCGAAGAGACCCGTGGCGGGTTGAAACTTTCGGTGCCGCATATCAGGCTCGACAGGGCCATGCAGTTC
CTGCTCGGAGATCGACTCGC

Downstream 100 bases:

>100_bases
ACGGAGGGCCTGCGCGCTGCCGATACAGCCAGCATATAAGTCAGGATGAAACCATCCGTTAACCATTCTTGCGGCATTAT
AGTTTCACGTTCTGCAGCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 361; Mature: 361

Protein sequence:

>361_residues
MNDDSNGRRRRPAAFPVGTEDATSRELEQTPRRAPGSFSDKIVMTPDADDPFIETTAAIEALNPPEARPPRRRLSFGKIA
AGAFGILISLAVGLWVDRLVRDLFSRADWLGYGAVAVVAIGAAAFLIVVAREIFGMMQLTAVQALKADLAAAAVAGKAQA
ARAATARLVHLLAGNPRTAKGRARLADTEGEIIDAPHLVDLTERELLAPLDREARRIILGAAKRVSIVTAVSPRALVDLG
YVLYESARMIRAMAELYGGRPGTLGLLRLMRDVVAHLAVTGSIAVGDSLVQQILGHGLASKLSARLGEGVINGLMTARIG
IAAMDLCRPMPFRALKRPSIGDFLADLAPGAGRTESATGKA

Sequences:

>Translated_361_residues
MNDDSNGRRRRPAAFPVGTEDATSRELEQTPRRAPGSFSDKIVMTPDADDPFIETTAAIEALNPPEARPPRRRLSFGKIA
AGAFGILISLAVGLWVDRLVRDLFSRADWLGYGAVAVVAIGAAAFLIVVAREIFGMMQLTAVQALKADLAAAAVAGKAQA
ARAATARLVHLLAGNPRTAKGRARLADTEGEIIDAPHLVDLTERELLAPLDREARRIILGAAKRVSIVTAVSPRALVDLG
YVLYESARMIRAMAELYGGRPGTLGLLRLMRDVVAHLAVTGSIAVGDSLVQQILGHGLASKLSARLGEGVINGLMTARIG
IAAMDLCRPMPFRALKRPSIGDFLADLAPGAGRTESATGKA
>Mature_361_residues
MNDDSNGRRRRPAAFPVGTEDATSRELEQTPRRAPGSFSDKIVMTPDADDPFIETTAAIEALNPPEARPPRRRLSFGKIA
AGAFGILISLAVGLWVDRLVRDLFSRADWLGYGAVAVVAIGAAAFLIVVAREIFGMMQLTAVQALKADLAAAAVAGKAQA
ARAATARLVHLLAGNPRTAKGRARLADTEGEIIDAPHLVDLTERELLAPLDREARRIILGAAKRVSIVTAVSPRALVDLG
YVLYESARMIRAMAELYGGRPGTLGLLRLMRDVVAHLAVTGSIAVGDSLVQQILGHGLASKLSARLGEGVINGLMTARIG
IAAMDLCRPMPFRALKRPSIGDFLADLAPGAGRTESATGKA

Specific function: Unknown

COG id: COG3768

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0283 family

Homologues:

Organism=Escherichia coli, GI1787582, Length=324, Percent_Identity=28.7037037037037, Blast_Score=110, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1530_SINMW (A6U9P2)

Other databases:

- EMBL:   CP000738
- RefSeq:   YP_001327207.1
- STRING:   A6U9P2
- GeneID:   5322388
- GenomeReviews:   CP000738_GR
- KEGG:   smd:Smed_1530
- eggNOG:   COG3768
- HOGENOM:   HBG466177
- OMA:   IAHLAIT
- ProtClustDB:   PRK05415
- BioCyc:   SMED366394:SMED_1530-MONOMER
- HAMAP:   MF_01085
- InterPro:   IPR021147
- InterPro:   IPR006507
- TIGRFAMs:   TIGR01620

Pfam domain/function: PF05128 DUF697

EC number: NA

Molecular weight: Translated: 38159; Mature: 38159

Theoretical pI: Translated: 10.61; Mature: 10.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x20620f04)-; HASH(0x21a9ba84)-;

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDDSNGRRRRPAAFPVGTEDATSRELEQTPRRAPGSFSDKIVMTPDADDPFIETTAAIE
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEECCCCCCCHHHHHHHHH
ALNPPEARPPRRRLSFGKIAAGAFGILISLAVGLWVDRLVRDLFSRADWLGYGAVAVVAI
CCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
GAAAFLIVVAREIFGMMQLTAVQALKADLAAAAVAGKAQAARAATARLVHLLAGNPRTAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
GRARLADTEGEIIDAPHLVDLTERELLAPLDREARRIILGAAKRVSIVTAVSPRALVDLG
CCCEECCCCCCEECCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHH
YVLYESARMIRAMAELYGGRPGTLGLLRLMRDVVAHLAVTGSIAVGDSLVQQILGHGLAS
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHH
KLSARLGEGVINGLMTARIGIAAMDLCRPMPFRALKRPSIGDFLADLAPGAGRTESATGK
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHCCCCCCCCCCCCC
A
H
>Mature Secondary Structure
MNDDSNGRRRRPAAFPVGTEDATSRELEQTPRRAPGSFSDKIVMTPDADDPFIETTAAIE
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEECCCCCCCHHHHHHHHH
ALNPPEARPPRRRLSFGKIAAGAFGILISLAVGLWVDRLVRDLFSRADWLGYGAVAVVAI
CCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
GAAAFLIVVAREIFGMMQLTAVQALKADLAAAAVAGKAQAARAATARLVHLLAGNPRTAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
GRARLADTEGEIIDAPHLVDLTERELLAPLDREARRIILGAAKRVSIVTAVSPRALVDLG
CCCEECCCCCCEECCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHH
YVLYESARMIRAMAELYGGRPGTLGLLRLMRDVVAHLAVTGSIAVGDSLVQQILGHGLAS
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHH
KLSARLGEGVINGLMTARIGIAAMDLCRPMPFRALKRPSIGDFLADLAPGAGRTESATGK
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHCCCCCCCCCCCCC
A
H

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA