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The map label for this gene is ydeF [H]

Identifier: 150396715

GI number: 150396715

Start: 1583967

End: 1585385

Strand: Direct

Name: ydeF [H]

Synonym: Smed_1503

Alternate gene names: 150396715

Gene position: 1583967-1585385 (Clockwise)

Preceding gene: 150396713

Following gene: 150396716

Centisome position: 41.88

GC content: 63.78

Gene sequence:

>1419_bases
ATGACAACTTGGCTGCCAGACATCGAACAGGGCCACGGCCCGCTTTACGCGCGCATCGCCGACCAGATTGAAGAGGCGAT
AGGCAACGGCACCCTGCCCGTCGGCACGAAGTTGCCGCCCCAACGCAATCTTGCATTCGATGTCGGCGTGACGATCGGCA
CGATCGGACGCGCCTATGGGATTGTCCGCGAGCGAGGCCTGGTCAGCGGCGAGGTCGGGCGCGGTACCTACGTTCTCGAC
CACCCGGAGAGCCGGCCGCCGGAACAGTCGGACCCGCTGACGACGTCGCTGTCAGGGACGCGCCCGCTCATCGCCCCTGC
CGGAAAGCTCCGCTTCGACAGCACGGCCGCGCCCGACATAGGACAGGGTGACATTCTGGCTAGATTGCTCAGCGAGATCA
GCCGCGAGCATCATCGGGACATTGCGAGCTATGCCCGCAATTTTCCAGAGCATTGGTTCGAGGCAGGGTCTCAATGGCTC
GCACGGGAGAGCTTCCGCCCGGCGCCGGAAACGGTGGTTCCGACGCTCGGCGCCCACGCCGCAGTCGTCGCGGTAATCTC
CGCCGTCACCTCGCCTGGCGATCGCATTGCCTTCGAGACTCTGACCTACTCCCAGATCAGCCGCAGCGCAGGCCTCATCG
GCCGGCGGATCGCACTGGTCGAGAGCGACGAGTTCGGAATGCGGCCGGAAGACTTCGAGCGCGTCTGCGCACAACAGCAC
CCGAAACTCGCCTTTCTCATGCCCGGCGCCCAGAATCCGACCGTCGCCGTCATGCCCCTCGACCGGCGCCGGGCGATTGC
CGATATAGCGCGCAAGTACGGCGTCTGGCTGATCGAGGACAACCTCTACGGCTCGATGATCGGAGACCCGCTTCCGCTGC
TCGTGGAGCTTGCGCCCGAGCGGACTTTTCTTGTCGGCGGGCTCTCGAAGTCCGTTGCAGCCGGCGTACGCGGCGGCTGG
GTCGCTTGCCCGCCGCATTTCAGTCAACGTATTCGCGTGGCCCATAAGATGGTGAGCGGCGGCCTGCCTTTCATTCTCGC
AGAACTATGCGCCCGCCTGGTCCTCTCGGGATCCGCATCCGTATTGCGTAATCGCGGCGTGGAGGAAATCGGTGCGCGCG
TAGCGTTGGCTCGCGAAATCTTTTCCGGGTTCGAGTTCAACTCGCATTCCAAGATCCCGTTTTTCTGGCTGAAACTGCCC
GAGCCGTGGCTTTCCGGAACATTCAAGCAGGCCGCTCTTCAGGAAGGCGTGCTCATCGACGACGAGGACGAGTTCAAGGC
CGGACGTTCCGACCGGGTTTTCCATCGCATCCGCGTCGGCTTCTCCTCTCCCGTCGACCGATCGGAGGTGAAGCGAGGCT
TCGACGTTCTGCGGCGTCTGCTCGACAGTGGACGCGTCGGATACGACAGTTTCGATTGA

Upstream 100 bases:

>100_bases
ATTGTATCAATTGCACCCATTGTACCACCAATGTCCTCATTGCACTCCTACGACAGAGATAATTGACAGCGTTTGGCGCG
CAATATAGATAATTGTCACT

Downstream 100 bases:

>100_bases
CGGTCCATTCTCGAATGGTGACTTTCGCGCAAGCCTCGGCAATCTATCCACGCTTTTGATACCGCGTTGATTGATTCGCA
CTGGAAGGTTTCAGCATGAG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 472; Mature: 471

Protein sequence:

>472_residues
MTTWLPDIEQGHGPLYARIADQIEEAIGNGTLPVGTKLPPQRNLAFDVGVTIGTIGRAYGIVRERGLVSGEVGRGTYVLD
HPESRPPEQSDPLTTSLSGTRPLIAPAGKLRFDSTAAPDIGQGDILARLLSEISREHHRDIASYARNFPEHWFEAGSQWL
ARESFRPAPETVVPTLGAHAAVVAVISAVTSPGDRIAFETLTYSQISRSAGLIGRRIALVESDEFGMRPEDFERVCAQQH
PKLAFLMPGAQNPTVAVMPLDRRRAIADIARKYGVWLIEDNLYGSMIGDPLPLLVELAPERTFLVGGLSKSVAAGVRGGW
VACPPHFSQRIRVAHKMVSGGLPFILAELCARLVLSGSASVLRNRGVEEIGARVALAREIFSGFEFNSHSKIPFFWLKLP
EPWLSGTFKQAALQEGVLIDDEDEFKAGRSDRVFHRIRVGFSSPVDRSEVKRGFDVLRRLLDSGRVGYDSFD

Sequences:

>Translated_472_residues
MTTWLPDIEQGHGPLYARIADQIEEAIGNGTLPVGTKLPPQRNLAFDVGVTIGTIGRAYGIVRERGLVSGEVGRGTYVLD
HPESRPPEQSDPLTTSLSGTRPLIAPAGKLRFDSTAAPDIGQGDILARLLSEISREHHRDIASYARNFPEHWFEAGSQWL
ARESFRPAPETVVPTLGAHAAVVAVISAVTSPGDRIAFETLTYSQISRSAGLIGRRIALVESDEFGMRPEDFERVCAQQH
PKLAFLMPGAQNPTVAVMPLDRRRAIADIARKYGVWLIEDNLYGSMIGDPLPLLVELAPERTFLVGGLSKSVAAGVRGGW
VACPPHFSQRIRVAHKMVSGGLPFILAELCARLVLSGSASVLRNRGVEEIGARVALAREIFSGFEFNSHSKIPFFWLKLP
EPWLSGTFKQAALQEGVLIDDEDEFKAGRSDRVFHRIRVGFSSPVDRSEVKRGFDVLRRLLDSGRVGYDSFD
>Mature_471_residues
TTWLPDIEQGHGPLYARIADQIEEAIGNGTLPVGTKLPPQRNLAFDVGVTIGTIGRAYGIVRERGLVSGEVGRGTYVLDH
PESRPPEQSDPLTTSLSGTRPLIAPAGKLRFDSTAAPDIGQGDILARLLSEISREHHRDIASYARNFPEHWFEAGSQWLA
RESFRPAPETVVPTLGAHAAVVAVISAVTSPGDRIAFETLTYSQISRSAGLIGRRIALVESDEFGMRPEDFERVCAQQHP
KLAFLMPGAQNPTVAVMPLDRRRAIADIARKYGVWLIEDNLYGSMIGDPLPLLVELAPERTFLVGGLSKSVAAGVRGGWV
ACPPHFSQRIRVAHKMVSGGLPFILAELCARLVLSGSASVLRNRGVEEIGARVALAREIFSGFEFNSHSKIPFFWLKLPE
PWLSGTFKQAALQEGVLIDDEDEFKAGRSDRVFHRIRVGFSSPVDRSEVKRGFDVLRRLLDSGRVGYDSFD

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790797, Length=406, Percent_Identity=24.8768472906404, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1787710, Length=452, Percent_Identity=23.6725663716814, Blast_Score=91, Evalue=1e-19,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 51689; Mature: 51557

Theoretical pI: Translated: 7.12; Mature: 7.12

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTWLPDIEQGHGPLYARIADQIEEAIGNGTLPVGTKLPPQRNLAFDVGVTIGTIGRAYG
CCCCCCCHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHH
IVRERGLVSGEVGRGTYVLDHPESRPPEQSDPLTTSLSGTRPLIAPAGKLRFDSTAAPDI
HHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCEECCCCCCCCCCCCCCCEECCCCCCCC
GQGDILARLLSEISREHHRDIASYARNFPEHWFEAGSQWLARESFRPAPETVVPTLGAHA
CCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHCCCCHHH
AVVAVISAVTSPGDRIAFETLTYSQISRSAGLIGRRIALVESDEFGMRPEDFERVCAQQH
HHHHHHHHHCCCCCCEEEHHHHHHHHHHHHCHHHHEEEEEECCCCCCCHHHHHHHHHHCC
PKLAFLMPGAQNPTVAVMPLDRRRAIADIARKYGVWLIEDNLYGSMIGDPLPLLVELAPE
CCEEEECCCCCCCEEEEEECHHHHHHHHHHHHHCEEEEECCCCHHHCCCCHHHHHEECCC
RTFLVGGLSKSVAAGVRGGWVACPPHFSQRIRVAHKMVSGGLPFILAELCARLVLSGSAS
CEEEECCCHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHH
VLRNRGVEEIGARVALAREIFSGFEFNSHSKIPFFWLKLPEPWLSGTFKQAALQEGVLID
HHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHCCHHHHHHHHCCCEEC
DEDEFKAGRSDRVFHRIRVGFSSPVDRSEVKRGFDVLRRLLDSGRVGYDSFD
CCHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TTWLPDIEQGHGPLYARIADQIEEAIGNGTLPVGTKLPPQRNLAFDVGVTIGTIGRAYG
CCCCCCHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHH
IVRERGLVSGEVGRGTYVLDHPESRPPEQSDPLTTSLSGTRPLIAPAGKLRFDSTAAPDI
HHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCEECCCCCCCCCCCCCCCEECCCCCCCC
GQGDILARLLSEISREHHRDIASYARNFPEHWFEAGSQWLARESFRPAPETVVPTLGAHA
CCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHCCCCHHH
AVVAVISAVTSPGDRIAFETLTYSQISRSAGLIGRRIALVESDEFGMRPEDFERVCAQQH
HHHHHHHHHCCCCCCEEEHHHHHHHHHHHHCHHHHEEEEEECCCCCCCHHHHHHHHHHCC
PKLAFLMPGAQNPTVAVMPLDRRRAIADIARKYGVWLIEDNLYGSMIGDPLPLLVELAPE
CCEEEECCCCCCCEEEEEECHHHHHHHHHHHHHCEEEEECCCCHHHCCCCHHHHHEECCC
RTFLVGGLSKSVAAGVRGGWVACPPHFSQRIRVAHKMVSGGLPFILAELCARLVLSGSAS
CEEEECCCHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHH
VLRNRGVEEIGARVALAREIFSGFEFNSHSKIPFFWLKLPEPWLSGTFKQAALQEGVLID
HHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHCCHHHHHHHHCCCEEC
DEDEFKAGRSDRVFHRIRVGFSSPVDRSEVKRGFDVLRRLLDSGRVGYDSFD
CCHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]