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The map label for this gene is omp25 [H]

Identifier: 150396648

GI number: 150396648

Start: 1515373

End: 1516020

Strand: Direct

Name: omp25 [H]

Synonym: Smed_1434

Alternate gene names: 150396648

Gene position: 1515373-1516020 (Clockwise)

Preceding gene: 150396646

Following gene: 150396649

Centisome position: 40.07

GC content: 62.35

Gene sequence:

>648_bases
ATGATCAGAAATGTGCTTGTTGCGATCTTCGCGGCCTTCATGCTTGGCGGAAAGGCGCATGCAGCCGATCTGGCACAGCC
ACCGGAGCCGACACCGACGGTCGAGACAGTCCACAGCTTCGTCTGGACTGGCGGCTATCTCGGCTTGCAGGGCGGCGGTG
GCTGGCTGAACAGCGATCTGAGCGTTCCCGGCGGCGGCGGCTCGAAGCGGTTCAGTGGAGGCCTCTTGGGCGCCTTCGCC
GGCTACAATTACCAGCATGGTGACTGGGTCGTCGGCGTGGAGGGCGATGTCAGCTACAACTGGAATGATGAGACCGTCAC
CGTCTTCGGCACGAACACCGATGTGGGAACGGATGTTTCCGGATCCGTGCGCGCCCGCCTCGGATACACCGTCAACGACA
GGACGCTCCTCTATGCCACAGGCGGCTGGGCGGTAACGCGCGGTTTCGTCGACGTTGCCGGCGCGCCGAAGGAGAAGGAA
ACCTTCAACGGCTGGACCATCGGTGGCGGCGTCGACTACGGGTTCACGGACAGCGTCTTCGGACGCGCGGAGTATCGCTA
CAACGATTTCAGCGACAAGGATGTCGGCGGCGTCGATGTCGACCTCGACCAGCACCAGTTCACCATTGGTGTCGGCGTAA
AGTTCTGA

Upstream 100 bases:

>100_bases
CCCTCTTTTCTCTTCACCCGAGGGCCGCCGGGGGCGTTGTTTTTCGCAGACTCGCATCCGATATGTTGTTAATCTTTGCC
GACAACAGGAGGCGTCTGTG

Downstream 100 bases:

>100_bases
TCGCCTGGCGCGTTTCGATCAAGAACCCGGCAATTGCCGGGTTTTTCTGTGGAAGGAATTTCGACCACTTTTCGGGAAGT
GCTCCAAACATCGGATGACG

Product: porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MIRNVLVAIFAAFMLGGKAHAADLAQPPEPTPTVETVHSFVWTGGYLGLQGGGGWLNSDLSVPGGGGSKRFSGGLLGAFA
GYNYQHGDWVVGVEGDVSYNWNDETVTVFGTNTDVGTDVSGSVRARLGYTVNDRTLLYATGGWAVTRGFVDVAGAPKEKE
TFNGWTIGGGVDYGFTDSVFGRAEYRYNDFSDKDVGGVDVDLDQHQFTIGVGVKF

Sequences:

>Translated_215_residues
MIRNVLVAIFAAFMLGGKAHAADLAQPPEPTPTVETVHSFVWTGGYLGLQGGGGWLNSDLSVPGGGGSKRFSGGLLGAFA
GYNYQHGDWVVGVEGDVSYNWNDETVTVFGTNTDVGTDVSGSVRARLGYTVNDRTLLYATGGWAVTRGFVDVAGAPKEKE
TFNGWTIGGGVDYGFTDSVFGRAEYRYNDFSDKDVGGVDVDLDQHQFTIGVGVKF
>Mature_215_residues
MIRNVLVAIFAAFMLGGKAHAADLAQPPEPTPTVETVHSFVWTGGYLGLQGGGGWLNSDLSVPGGGGSKRFSGGLLGAFA
GYNYQHGDWVVGVEGDVSYNWNDETVTVFGTNTDVGTDVSGSVRARLGYTVNDRTLLYATGGWAVTRGFVDVAGAPKEKE
TFNGWTIGGGVDYGFTDSVFGRAEYRYNDFSDKDVGGVDVDLDQHQFTIGVGVKF

Specific function: Unknown

COG id: COG3637

COG function: function code M; Opacity protein and related surface antigens

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the omp25/ropB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR000498 [H]

Pfam domain/function: PF01389 OmpA_membrane [H]

EC number: NA

Molecular weight: Translated: 22782; Mature: 22782

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRNVLVAIFAAFMLGGKAHAADLAQPPEPTPTVETVHSFVWTGGYLGLQGGGGWLNSDL
CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCC
SVPGGGGSKRFSGGLLGAFAGYNYQHGDWVVGVEGDVSYNWNDETVTVFGTNTDVGTDVS
CCCCCCCCCCCCCCEEEHHCCCCCCCCCEEEEECCCEEECCCCCEEEEEECCCCCCCCCC
GSVRARLGYTVNDRTLLYATGGWAVTRGFVDVAGAPKEKETFNGWTIGGGVDYGFTDSVF
CCEEEEEEEEECCCEEEEEECCEEEEECEEEECCCCCCCCCCCCEEECCCCCCCCCCCCC
GRAEYRYNDFSDKDVGGVDVDLDQHQFTIGVGVKF
CCEEEEECCCCCCCCCCEEEECCCCEEEEEEEEEC
>Mature Secondary Structure
MIRNVLVAIFAAFMLGGKAHAADLAQPPEPTPTVETVHSFVWTGGYLGLQGGGGWLNSDL
CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCC
SVPGGGGSKRFSGGLLGAFAGYNYQHGDWVVGVEGDVSYNWNDETVTVFGTNTDVGTDVS
CCCCCCCCCCCCCCEEEHHCCCCCCCCCEEEEECCCEEECCCCCEEEEEECCCCCCCCCC
GSVRARLGYTVNDRTLLYATGGWAVTRGFVDVAGAPKEKETFNGWTIGGGVDYGFTDSVF
CCEEEEEEEEECCCEEEEEECCEEEEECEEEECCCCCCCCCCCCEEECCCCCCCCCCCCC
GRAEYRYNDFSDKDVGGVDVDLDQHQFTIGVGVKF
CCEEEEECCCCCCCCCCEEEECCCCEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7896724 [H]