| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is cya3 [H]
Identifier: 150396494
GI number: 150396494
Start: 1369417
End: 1370916
Strand: Direct
Name: cya3 [H]
Synonym: Smed_1276
Alternate gene names: 150396494
Gene position: 1369417-1370916 (Clockwise)
Preceding gene: 150396492
Following gene: 150396496
Centisome position: 36.21
GC content: 62.4
Gene sequence:
>1500_bases ATGCGCTTTGCCTTCGGTCCCTTCGTGCTTGATCCGGGTGCTGGAACGCTCCTTCGGAACGACGATCATATTGCCGTCGG CTACCGCGGAGTGAAGCTGCTTGCAGCGCTCGTCGGACAGCCCGGAGAAATCCTGAGCAAGGCCGAGCTGATCGAGGCGG CATGGCCGGGCAGGGTTGTCGAGGAAGGCAACCTCACTGTCCAGATTGCCCTGCTGCGGAAGCTGCTTGGCCCTGCCGCC GACCGCGGTGAATGGATCGTCACGGTTCCGCGCGTCGGCTATCGCTTCGCGAAGTCCGTCGAACAGCTCGGCGGGGCGAA GCGAGAAGCCCTGCCGCTGCCCGAGAAACCGTCGATAGCCGTGCTGCCCTTCGTCAATTTGAGCAAGGACCCTGATCAGG AGTCCTTCGCGGATGGTTTGACCGCGGACCTCATTACCGACTTGTCCAGGACTCCGGGCCTGTTCGTCATCGCACGCAAC TCGGTCTTCGCCTACAAGGCAAAGACGATGGAAGTTCGCGAAATCGCACGGGATTTGGGCGTCCGTTACCTGCTGCAAGG CAGCGCAAGGCGCGCCGCGGGCCGCGCACGCATCAACGCCCAGCTGGTCGACGCGATGAGTGGGGAGCATCTATGGGCCG AGCGCTACGACCGCAGCCTGGATGATATCTTTTCTGTACAGGACGAGGTCACCGGCAAGATCGTGAAAGCACTGCTTGGC CGGCTGCGCGCGCCAACGCCGCGCAACCGGCCAAAAAATGTCGAGGCTTACGATCTTTGCGTCAGAGCACGCAAGCTGAT GGATGATTCGCCTCAGACGGCGCGGGAGGCGCATCTGATGCTGACGCGCGCGGTTTCGCTCGATCCGGAATATGCCGAGG CCTATCGCTGGCTTGCCATAAACCACTGGATGGGATTGGTACATTCCGGCGGACCGACCGTGTCTTCGCGTGGCATCGCT TTGGAACTGGCGCGCAAGGCCGTTGCAATCGACCCCGGCGATGCCGGCTGTCGCTGGGTCCTGGCTTACCTTCTTGCCTA TGACCAAAGGTTTACCGAAGCGGACGCGGAATTCGCCAAAGCGGTCGAACTCGACCCGAACGAGGCGGACGCCTGGGCGG CTCTATCCGACATCACCGTTCTGGCGGGTCAGGTCGAGGAAGGCCTCGATCACATCCGCAGGGCGTTCCGGCTGAACCCT TTTCCGGCGAGTTGGTACTATCTGACGCTCGGTCAGGCACAATACGCGGCCGGCGAATACGAGGCCGCTGTCGAGACGCT GCGCAGGGACGAGACTTATCGTACAAGTTCACGCCGTTTCCTGGCGGCAAGCCTTGCTCAACTCGGCCGGCTCGACGAAG CGCGGGCCGAGGTCGAGCTATTCCTCGTCGGCAATCCGCATTTCACAATCCGCCACTGGGCTGCGACGGAGCCATTCCGC GATGCGGCAACACTCGAGCATTTCGTCCTCGGCTATCGCGGGGCCGGTTTGCCAGAGTGA
Upstream 100 bases:
>100_bases GTGCATGAATTCTGCCGGACGCGAACGGCGTAGTAATTAAGCCGCGCCAAAAAATTTTCAAAAACATCCAAACGGATTAT AGATGCGCCCTATGCCCCGC
Downstream 100 bases:
>100_bases CGCGCCGGCGCGCGCTCCCACCGCTCCTTTCGGCGGCCTACTCCTCGAAACGACTCGTGTCGGTTCGATCGCCTTCATAT AGTTTCGAGAGCGGAAACGG
Product: transcriptional regulator domain-containing protein
Products: NA
Alternate protein names: ATP pyrophosphate-lyase 3; Adenylyl cyclase 3 [H]
Number of amino acids: Translated: 499; Mature: 499
Protein sequence:
>499_residues MRFAFGPFVLDPGAGTLLRNDDHIAVGYRGVKLLAALVGQPGEILSKAELIEAAWPGRVVEEGNLTVQIALLRKLLGPAA DRGEWIVTVPRVGYRFAKSVEQLGGAKREALPLPEKPSIAVLPFVNLSKDPDQESFADGLTADLITDLSRTPGLFVIARN SVFAYKAKTMEVREIARDLGVRYLLQGSARRAAGRARINAQLVDAMSGEHLWAERYDRSLDDIFSVQDEVTGKIVKALLG RLRAPTPRNRPKNVEAYDLCVRARKLMDDSPQTAREAHLMLTRAVSLDPEYAEAYRWLAINHWMGLVHSGGPTVSSRGIA LELARKAVAIDPGDAGCRWVLAYLLAYDQRFTEADAEFAKAVELDPNEADAWAALSDITVLAGQVEEGLDHIRRAFRLNP FPASWYYLTLGQAQYAAGEYEAAVETLRRDETYRTSSRRFLAASLAQLGRLDEARAEVELFLVGNPHFTIRHWAATEPFR DAATLEHFVLGYRGAGLPE
Sequences:
>Translated_499_residues MRFAFGPFVLDPGAGTLLRNDDHIAVGYRGVKLLAALVGQPGEILSKAELIEAAWPGRVVEEGNLTVQIALLRKLLGPAA DRGEWIVTVPRVGYRFAKSVEQLGGAKREALPLPEKPSIAVLPFVNLSKDPDQESFADGLTADLITDLSRTPGLFVIARN SVFAYKAKTMEVREIARDLGVRYLLQGSARRAAGRARINAQLVDAMSGEHLWAERYDRSLDDIFSVQDEVTGKIVKALLG RLRAPTPRNRPKNVEAYDLCVRARKLMDDSPQTAREAHLMLTRAVSLDPEYAEAYRWLAINHWMGLVHSGGPTVSSRGIA LELARKAVAIDPGDAGCRWVLAYLLAYDQRFTEADAEFAKAVELDPNEADAWAALSDITVLAGQVEEGLDHIRRAFRLNP FPASWYYLTLGQAQYAAGEYEAAVETLRRDETYRTSSRRFLAASLAQLGRLDEARAEVELFLVGNPHFTIRHWAATEPFR DAATLEHFVLGYRGAGLPE >Mature_499_residues MRFAFGPFVLDPGAGTLLRNDDHIAVGYRGVKLLAALVGQPGEILSKAELIEAAWPGRVVEEGNLTVQIALLRKLLGPAA DRGEWIVTVPRVGYRFAKSVEQLGGAKREALPLPEKPSIAVLPFVNLSKDPDQESFADGLTADLITDLSRTPGLFVIARN SVFAYKAKTMEVREIARDLGVRYLLQGSARRAAGRARINAQLVDAMSGEHLWAERYDRSLDDIFSVQDEVTGKIVKALLG RLRAPTPRNRPKNVEAYDLCVRARKLMDDSPQTAREAHLMLTRAVSLDPEYAEAYRWLAINHWMGLVHSGGPTVSSRGIA LELARKAVAIDPGDAGCRWVLAYLLAYDQRFTEADAEFAKAVELDPNEADAWAALSDITVLAGQVEEGLDHIRRAFRLNP FPASWYYLTLGQAQYAAGEYEAAVETLRRDETYRTSSRRFLAASLAQLGRLDEARAEVELFLVGNPHFTIRHWAATEPFR DAATLEHFVLGYRGAGLPE
Specific function: Required For Pcad Induction, A Promoter Upstream Of Cadb That Is Responsible For The Ph-Regulated Expression Of Cada. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 5 TPR repeats [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001054 - InterPro: IPR001440 - InterPro: IPR013026 - InterPro: IPR011990 - InterPro: IPR019734 [H]
Pfam domain/function: PF00211 Guanylate_cyc; PF00515 TPR_1 [H]
EC number: =4.6.1.1 [H]
Molecular weight: Translated: 55144; Mature: 55144
Theoretical pI: Translated: 6.45; Mature: 6.45
Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRFAFGPFVLDPGAGTLLRNDDHIAVGYRGVKLLAALVGQPGEILSKAELIEAAWPGRVV CCCCCCCEEECCCCCCEEECCCEEEECHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEE EEGNLTVQIALLRKLLGPAADRGEWIVTVPRVGYRFAKSVEQLGGAKREALPLPEKPSIA ECCCCEEEHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEE VLPFVNLSKDPDQESFADGLTADLITDLSRTPGLFVIARNSVFAYKAKTMEVREIARDLG EEEECCCCCCCCHHHHHCCCHHHHHHHHCCCCCEEEEECCCEEEEEHHHHHHHHHHHHHC VRYLLQGSARRAAGRARINAQLVDAMSGEHLWAERYDRSLDDIFSVQDEVTGKIVKALLG HHEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH RLRAPTPRNRPKNVEAYDLCVRARKLMDDSPQTAREAHLMLTRAVSLDPEYAEAYRWLAI HHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH NHWMGLVHSGGPTVSSRGIALELARKAVAIDPGDAGCRWVLAYLLAYDQRFTEADAEFAK HHHHHHHCCCCCCCCCCCCHHEEHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH AVELDPNEADAWAALSDITVLAGQVEEGLDHIRRAFRLNPFPASWYYLTLGQAQYAAGEY HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHCCCHH EAAVETLRRDETYRTSSRRFLAASLAQLGRLDEARAEVELFLVGNPHFTIRHWAATEPFR HHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCEEEEEECCCCCCH DAATLEHFVLGYRGAGLPE HHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MRFAFGPFVLDPGAGTLLRNDDHIAVGYRGVKLLAALVGQPGEILSKAELIEAAWPGRVV CCCCCCCEEECCCCCCEEECCCEEEECHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEE EEGNLTVQIALLRKLLGPAADRGEWIVTVPRVGYRFAKSVEQLGGAKREALPLPEKPSIA ECCCCEEEHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEE VLPFVNLSKDPDQESFADGLTADLITDLSRTPGLFVIARNSVFAYKAKTMEVREIARDLG EEEECCCCCCCCHHHHHCCCHHHHHHHHCCCCCEEEEECCCEEEEEHHHHHHHHHHHHHC VRYLLQGSARRAAGRARINAQLVDAMSGEHLWAERYDRSLDDIFSVQDEVTGKIVKALLG HHEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH RLRAPTPRNRPKNVEAYDLCVRARKLMDDSPQTAREAHLMLTRAVSLDPEYAEAYRWLAI HHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH NHWMGLVHSGGPTVSSRGIALELARKAVAIDPGDAGCRWVLAYLLAYDQRFTEADAEFAK HHHHHHHCCCCCCCCCCCCHHEEHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH AVELDPNEADAWAALSDITVLAGQVEEGLDHIRRAFRLNPFPASWYYLTLGQAQYAAGEY HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHCCCHH EAAVETLRRDETYRTSSRRFLAASLAQLGRLDEARAEVELFLVGNPHFTIRHWAATEPFR HHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCEEEEEECCCCCCH DAATLEHFVLGYRGAGLPE HHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10485295; 11481432 [H]