Definition Sinorhizobium medicae WSM419 chromosome, complete genome.
Accession NC_009636
Length 3,781,904

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The map label for this gene is cya3 [H]

Identifier: 150396494

GI number: 150396494

Start: 1369417

End: 1370916

Strand: Direct

Name: cya3 [H]

Synonym: Smed_1276

Alternate gene names: 150396494

Gene position: 1369417-1370916 (Clockwise)

Preceding gene: 150396492

Following gene: 150396496

Centisome position: 36.21

GC content: 62.4

Gene sequence:

>1500_bases
ATGCGCTTTGCCTTCGGTCCCTTCGTGCTTGATCCGGGTGCTGGAACGCTCCTTCGGAACGACGATCATATTGCCGTCGG
CTACCGCGGAGTGAAGCTGCTTGCAGCGCTCGTCGGACAGCCCGGAGAAATCCTGAGCAAGGCCGAGCTGATCGAGGCGG
CATGGCCGGGCAGGGTTGTCGAGGAAGGCAACCTCACTGTCCAGATTGCCCTGCTGCGGAAGCTGCTTGGCCCTGCCGCC
GACCGCGGTGAATGGATCGTCACGGTTCCGCGCGTCGGCTATCGCTTCGCGAAGTCCGTCGAACAGCTCGGCGGGGCGAA
GCGAGAAGCCCTGCCGCTGCCCGAGAAACCGTCGATAGCCGTGCTGCCCTTCGTCAATTTGAGCAAGGACCCTGATCAGG
AGTCCTTCGCGGATGGTTTGACCGCGGACCTCATTACCGACTTGTCCAGGACTCCGGGCCTGTTCGTCATCGCACGCAAC
TCGGTCTTCGCCTACAAGGCAAAGACGATGGAAGTTCGCGAAATCGCACGGGATTTGGGCGTCCGTTACCTGCTGCAAGG
CAGCGCAAGGCGCGCCGCGGGCCGCGCACGCATCAACGCCCAGCTGGTCGACGCGATGAGTGGGGAGCATCTATGGGCCG
AGCGCTACGACCGCAGCCTGGATGATATCTTTTCTGTACAGGACGAGGTCACCGGCAAGATCGTGAAAGCACTGCTTGGC
CGGCTGCGCGCGCCAACGCCGCGCAACCGGCCAAAAAATGTCGAGGCTTACGATCTTTGCGTCAGAGCACGCAAGCTGAT
GGATGATTCGCCTCAGACGGCGCGGGAGGCGCATCTGATGCTGACGCGCGCGGTTTCGCTCGATCCGGAATATGCCGAGG
CCTATCGCTGGCTTGCCATAAACCACTGGATGGGATTGGTACATTCCGGCGGACCGACCGTGTCTTCGCGTGGCATCGCT
TTGGAACTGGCGCGCAAGGCCGTTGCAATCGACCCCGGCGATGCCGGCTGTCGCTGGGTCCTGGCTTACCTTCTTGCCTA
TGACCAAAGGTTTACCGAAGCGGACGCGGAATTCGCCAAAGCGGTCGAACTCGACCCGAACGAGGCGGACGCCTGGGCGG
CTCTATCCGACATCACCGTTCTGGCGGGTCAGGTCGAGGAAGGCCTCGATCACATCCGCAGGGCGTTCCGGCTGAACCCT
TTTCCGGCGAGTTGGTACTATCTGACGCTCGGTCAGGCACAATACGCGGCCGGCGAATACGAGGCCGCTGTCGAGACGCT
GCGCAGGGACGAGACTTATCGTACAAGTTCACGCCGTTTCCTGGCGGCAAGCCTTGCTCAACTCGGCCGGCTCGACGAAG
CGCGGGCCGAGGTCGAGCTATTCCTCGTCGGCAATCCGCATTTCACAATCCGCCACTGGGCTGCGACGGAGCCATTCCGC
GATGCGGCAACACTCGAGCATTTCGTCCTCGGCTATCGCGGGGCCGGTTTGCCAGAGTGA

Upstream 100 bases:

>100_bases
GTGCATGAATTCTGCCGGACGCGAACGGCGTAGTAATTAAGCCGCGCCAAAAAATTTTCAAAAACATCCAAACGGATTAT
AGATGCGCCCTATGCCCCGC

Downstream 100 bases:

>100_bases
CGCGCCGGCGCGCGCTCCCACCGCTCCTTTCGGCGGCCTACTCCTCGAAACGACTCGTGTCGGTTCGATCGCCTTCATAT
AGTTTCGAGAGCGGAAACGG

Product: transcriptional regulator domain-containing protein

Products: NA

Alternate protein names: ATP pyrophosphate-lyase 3; Adenylyl cyclase 3 [H]

Number of amino acids: Translated: 499; Mature: 499

Protein sequence:

>499_residues
MRFAFGPFVLDPGAGTLLRNDDHIAVGYRGVKLLAALVGQPGEILSKAELIEAAWPGRVVEEGNLTVQIALLRKLLGPAA
DRGEWIVTVPRVGYRFAKSVEQLGGAKREALPLPEKPSIAVLPFVNLSKDPDQESFADGLTADLITDLSRTPGLFVIARN
SVFAYKAKTMEVREIARDLGVRYLLQGSARRAAGRARINAQLVDAMSGEHLWAERYDRSLDDIFSVQDEVTGKIVKALLG
RLRAPTPRNRPKNVEAYDLCVRARKLMDDSPQTAREAHLMLTRAVSLDPEYAEAYRWLAINHWMGLVHSGGPTVSSRGIA
LELARKAVAIDPGDAGCRWVLAYLLAYDQRFTEADAEFAKAVELDPNEADAWAALSDITVLAGQVEEGLDHIRRAFRLNP
FPASWYYLTLGQAQYAAGEYEAAVETLRRDETYRTSSRRFLAASLAQLGRLDEARAEVELFLVGNPHFTIRHWAATEPFR
DAATLEHFVLGYRGAGLPE

Sequences:

>Translated_499_residues
MRFAFGPFVLDPGAGTLLRNDDHIAVGYRGVKLLAALVGQPGEILSKAELIEAAWPGRVVEEGNLTVQIALLRKLLGPAA
DRGEWIVTVPRVGYRFAKSVEQLGGAKREALPLPEKPSIAVLPFVNLSKDPDQESFADGLTADLITDLSRTPGLFVIARN
SVFAYKAKTMEVREIARDLGVRYLLQGSARRAAGRARINAQLVDAMSGEHLWAERYDRSLDDIFSVQDEVTGKIVKALLG
RLRAPTPRNRPKNVEAYDLCVRARKLMDDSPQTAREAHLMLTRAVSLDPEYAEAYRWLAINHWMGLVHSGGPTVSSRGIA
LELARKAVAIDPGDAGCRWVLAYLLAYDQRFTEADAEFAKAVELDPNEADAWAALSDITVLAGQVEEGLDHIRRAFRLNP
FPASWYYLTLGQAQYAAGEYEAAVETLRRDETYRTSSRRFLAASLAQLGRLDEARAEVELFLVGNPHFTIRHWAATEPFR
DAATLEHFVLGYRGAGLPE
>Mature_499_residues
MRFAFGPFVLDPGAGTLLRNDDHIAVGYRGVKLLAALVGQPGEILSKAELIEAAWPGRVVEEGNLTVQIALLRKLLGPAA
DRGEWIVTVPRVGYRFAKSVEQLGGAKREALPLPEKPSIAVLPFVNLSKDPDQESFADGLTADLITDLSRTPGLFVIARN
SVFAYKAKTMEVREIARDLGVRYLLQGSARRAAGRARINAQLVDAMSGEHLWAERYDRSLDDIFSVQDEVTGKIVKALLG
RLRAPTPRNRPKNVEAYDLCVRARKLMDDSPQTAREAHLMLTRAVSLDPEYAEAYRWLAINHWMGLVHSGGPTVSSRGIA
LELARKAVAIDPGDAGCRWVLAYLLAYDQRFTEADAEFAKAVELDPNEADAWAALSDITVLAGQVEEGLDHIRRAFRLNP
FPASWYYLTLGQAQYAAGEYEAAVETLRRDETYRTSSRRFLAASLAQLGRLDEARAEVELFLVGNPHFTIRHWAATEPFR
DAATLEHFVLGYRGAGLPE

Specific function: Required For Pcad Induction, A Promoter Upstream Of Cadb That Is Responsible For The Ph-Regulated Expression Of Cada. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 5 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR001440
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF00211 Guanylate_cyc; PF00515 TPR_1 [H]

EC number: =4.6.1.1 [H]

Molecular weight: Translated: 55144; Mature: 55144

Theoretical pI: Translated: 6.45; Mature: 6.45

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFAFGPFVLDPGAGTLLRNDDHIAVGYRGVKLLAALVGQPGEILSKAELIEAAWPGRVV
CCCCCCCEEECCCCCCEEECCCEEEECHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEE
EEGNLTVQIALLRKLLGPAADRGEWIVTVPRVGYRFAKSVEQLGGAKREALPLPEKPSIA
ECCCCEEEHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEE
VLPFVNLSKDPDQESFADGLTADLITDLSRTPGLFVIARNSVFAYKAKTMEVREIARDLG
EEEECCCCCCCCHHHHHCCCHHHHHHHHCCCCCEEEEECCCEEEEEHHHHHHHHHHHHHC
VRYLLQGSARRAAGRARINAQLVDAMSGEHLWAERYDRSLDDIFSVQDEVTGKIVKALLG
HHEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
RLRAPTPRNRPKNVEAYDLCVRARKLMDDSPQTAREAHLMLTRAVSLDPEYAEAYRWLAI
HHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
NHWMGLVHSGGPTVSSRGIALELARKAVAIDPGDAGCRWVLAYLLAYDQRFTEADAEFAK
HHHHHHHCCCCCCCCCCCCHHEEHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AVELDPNEADAWAALSDITVLAGQVEEGLDHIRRAFRLNPFPASWYYLTLGQAQYAAGEY
HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHCCCHH
EAAVETLRRDETYRTSSRRFLAASLAQLGRLDEARAEVELFLVGNPHFTIRHWAATEPFR
HHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCEEEEEECCCCCCH
DAATLEHFVLGYRGAGLPE
HHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MRFAFGPFVLDPGAGTLLRNDDHIAVGYRGVKLLAALVGQPGEILSKAELIEAAWPGRVV
CCCCCCCEEECCCCCCEEECCCEEEECHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEE
EEGNLTVQIALLRKLLGPAADRGEWIVTVPRVGYRFAKSVEQLGGAKREALPLPEKPSIA
ECCCCEEEHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEE
VLPFVNLSKDPDQESFADGLTADLITDLSRTPGLFVIARNSVFAYKAKTMEVREIARDLG
EEEECCCCCCCCHHHHHCCCHHHHHHHHCCCCCEEEEECCCEEEEEHHHHHHHHHHHHHC
VRYLLQGSARRAAGRARINAQLVDAMSGEHLWAERYDRSLDDIFSVQDEVTGKIVKALLG
HHEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
RLRAPTPRNRPKNVEAYDLCVRARKLMDDSPQTAREAHLMLTRAVSLDPEYAEAYRWLAI
HHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
NHWMGLVHSGGPTVSSRGIALELARKAVAIDPGDAGCRWVLAYLLAYDQRFTEADAEFAK
HHHHHHHCCCCCCCCCCCCHHEEHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AVELDPNEADAWAALSDITVLAGQVEEGLDHIRRAFRLNPFPASWYYLTLGQAQYAAGEY
HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHCCCHH
EAAVETLRRDETYRTSSRRFLAASLAQLGRLDEARAEVELFLVGNPHFTIRHWAATEPFR
HHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCEEEEEECCCCCCH
DAATLEHFVLGYRGAGLPE
HHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10485295; 11481432 [H]