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The map label for this gene is ycaN [H]

Identifier: 150396479

GI number: 150396479

Start: 1354379

End: 1355287

Strand: Direct

Name: ycaN [H]

Synonym: Smed_1261

Alternate gene names: 150396479

Gene position: 1354379-1355287 (Clockwise)

Preceding gene: 150396477

Following gene: 150396480

Centisome position: 35.81

GC content: 63.81

Gene sequence:

>909_bases
ATGAACGACCTGCCTCTTGCCGATCTCGATGCTTTCGCCGCAGTTGCACGCGAGCGCAGCTTTCGCACGGCCGCGCGCAA
GCGCGGCGTTTCCGCTTCTGCGCTCAGCGAAGCCTTGCGGCGGCTGGAGGCAAAACTCGGCGTCCGATTGCTCAACCGCA
CCACGCGCAGCGTCACGCCGACGGAAGCGGGCAAGCGCTTGCTCGAACGTTTGACGCCTGCGCTCGGCGAGATTGCCGGG
GCGCTCGACCAGGTCGCGAGCGAGCGCGACAGCCCCGCGGGCACATTGCGGCTGAACGTTCCGACCATCGTAGCAAGGGT
TATTCTGCCGCCGCTCGTCGGCCGCTTCATGAAAGCGCATCCGGCGATCACGCTGGAGGTGACCGCCGAGGATGGCTTCA
TCGATGTCCTTGCCGCGGGGTTCGACGCCGGCGTGCGATACGAAGAGCGGGTCGAGAAGGATATGATCGCAATTCCCCTG
GGGCCGCGCGTACAGCGCTACATCACTGCGGCGGCCCCGGATTATCTTGCCCGCCGAGGCGAACCGCAGCATCCGCGTGA
TCTCCTCGAGCACGCAACCGTGCGCCATCGCTTTCAGAATGGCGTGATGCTGCCATGGGAGTTCGGCGAGGGAGACGCGA
CAATAATCATCGCGCCACCCTCAACCGTACTCGCCAACACGATCGAGCTCGAAATCAGCGCGGCTGTGGACGGACTGGGG
GTGATCCGCACATTCGAAGAATTCCTGAAGCCGGAAATCGAGGCCGGGCGACTGATTACGGTCCTTGACGCCTGGGAAAC
GAGTTTTCCCGGGCCGTTTCTTTATTATGCGGGTCGCAGACATCTGCCGGCACCTCTCCGCGCCTTTGTGGATTTCTTGA
AGTCCGAGCAGCGGCAGGCGGGGCGGTGA

Upstream 100 bases:

>100_bases
GAGGCCGTGCCGTGGCCGCTTGCGTCGGTAGATGTTTACTTCGAACGGCGCTGTGCGATAATCACCGGCAAGCCAAACGG
CTTGTTCTGGTTTTCGCACA

Downstream 100 bases:

>100_bases
TGGAGTGCCGGCGAATACGAAATATCAGCGCGCTCGATCGTCACGATCAAAAACTTTGAGATGTTCACGTATTGTTTCGG
CTCAGGCAAGTTGTTACACC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MNDLPLADLDAFAAVARERSFRTAARKRGVSASALSEALRRLEAKLGVRLLNRTTRSVTPTEAGKRLLERLTPALGEIAG
ALDQVASERDSPAGTLRLNVPTIVARVILPPLVGRFMKAHPAITLEVTAEDGFIDVLAAGFDAGVRYEERVEKDMIAIPL
GPRVQRYITAAAPDYLARRGEPQHPRDLLEHATVRHRFQNGVMLPWEFGEGDATIIIAPPSTVLANTIELEISAAVDGLG
VIRTFEEFLKPEIEAGRLITVLDAWETSFPGPFLYYAGRRHLPAPLRAFVDFLKSEQRQAGR

Sequences:

>Translated_302_residues
MNDLPLADLDAFAAVARERSFRTAARKRGVSASALSEALRRLEAKLGVRLLNRTTRSVTPTEAGKRLLERLTPALGEIAG
ALDQVASERDSPAGTLRLNVPTIVARVILPPLVGRFMKAHPAITLEVTAEDGFIDVLAAGFDAGVRYEERVEKDMIAIPL
GPRVQRYITAAAPDYLARRGEPQHPRDLLEHATVRHRFQNGVMLPWEFGEGDATIIIAPPSTVLANTIELEISAAVDGLG
VIRTFEEFLKPEIEAGRLITVLDAWETSFPGPFLYYAGRRHLPAPLRAFVDFLKSEQRQAGR
>Mature_302_residues
MNDLPLADLDAFAAVARERSFRTAARKRGVSASALSEALRRLEAKLGVRLLNRTTRSVTPTEAGKRLLERLTPALGEIAG
ALDQVASERDSPAGTLRLNVPTIVARVILPPLVGRFMKAHPAITLEVTAEDGFIDVLAAGFDAGVRYEERVEKDMIAIPL
GPRVQRYITAAAPDYLARRGEPQHPRDLLEHATVRHRFQNGVMLPWEFGEGDATIIIAPPSTVLANTIELEISAAVDGLG
VIRTFEEFLKPEIEAGRLITVLDAWETSFPGPFLYYAGRRHLPAPLRAFVDFLKSEQRQAGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=294, Percent_Identity=40.8163265306122, Blast_Score=236, Evalue=1e-63,
Organism=Escherichia coli, GI1787589, Length=290, Percent_Identity=39.6551724137931, Blast_Score=198, Evalue=3e-52,
Organism=Escherichia coli, GI145693193, Length=289, Percent_Identity=32.5259515570934, Blast_Score=128, Evalue=4e-31,
Organism=Escherichia coli, GI1786401, Length=295, Percent_Identity=29.4915254237288, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI87081978, Length=299, Percent_Identity=29.4314381270903, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1789440, Length=300, Percent_Identity=25.6666666666667, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1786448, Length=295, Percent_Identity=29.8305084745763, Blast_Score=101, Evalue=8e-23,
Organism=Escherichia coli, GI1789639, Length=298, Percent_Identity=25.8389261744966, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1788706, Length=263, Percent_Identity=23.574144486692, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787601, Length=125, Percent_Identity=27.2, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI157672245, Length=155, Percent_Identity=30.9677419354839, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI145693105, Length=193, Percent_Identity=30.5699481865285, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790399, Length=137, Percent_Identity=31.3868613138686, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790208, Length=129, Percent_Identity=33.3333333333333, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1788748, Length=121, Percent_Identity=33.0578512396694, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33173; Mature: 33173

Theoretical pI: Translated: 7.88; Mature: 7.88

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDLPLADLDAFAAVARERSFRTAARKRGVSASALSEALRRLEAKLGVRLLNRTTRSVTP
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
TEAGKRLLERLTPALGEIAGALDQVASERDSPAGTLRLNVPTIVARVILPPLVGRFMKAH
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHC
PAITLEVTAEDGFIDVLAAGFDAGVRYEERVEKDMIAIPLGPRVQRYITAAAPDYLARRG
CCEEEEEECCCCHHHHHHHCCCCCCCHHHHHHHCEEEECCCHHHHHHHHHCCHHHHHHCC
EPQHPRDLLEHATVRHRFQNGVMLPWEFGEGDATIIIAPPSTVLANTIELEISAAVDGLG
CCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECCHHHHHHHHEEEEHHHHHHHH
VIRTFEEFLKPEIEAGRLITVLDAWETSFPGPFLYYAGRRHLPAPLRAFVDFLKSEQRQA
HHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHC
GR
CC
>Mature Secondary Structure
MNDLPLADLDAFAAVARERSFRTAARKRGVSASALSEALRRLEAKLGVRLLNRTTRSVTP
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
TEAGKRLLERLTPALGEIAGALDQVASERDSPAGTLRLNVPTIVARVILPPLVGRFMKAH
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHC
PAITLEVTAEDGFIDVLAAGFDAGVRYEERVEKDMIAIPLGPRVQRYITAAAPDYLARRG
CCEEEEEECCCCHHHHHHHCCCCCCCHHHHHHHCEEEECCCHHHHHHHHHCCHHHHHHCC
EPQHPRDLLEHATVRHRFQNGVMLPWEFGEGDATIIIAPPSTVLANTIELEISAAVDGLG
CCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECCHHHHHHHHEEEEHHHHHHHH
VIRTFEEFLKPEIEAGRLITVLDAWETSFPGPFLYYAGRRHLPAPLRAFVDFLKSEQRQA
HHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHC
GR
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]