| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is 150396419
Identifier: 150396419
GI number: 150396419
Start: 1281258
End: 1281884
Strand: Direct
Name: 150396419
Synonym: Smed_1201
Alternate gene names: NA
Gene position: 1281258-1281884 (Clockwise)
Preceding gene: 150396418
Following gene: 150396420
Centisome position: 33.88
GC content: 60.13
Gene sequence:
>627_bases ATGACGACCTCAACTGCTCATGCCGCAGGCGATGACGCTTGCGATCTCCGCAAGATTTATAAGCCGCGTTTCCCCTTCAA CACAGTCAAATGCATCGGTCGCACACTGTTTAGATCACAGCAGGCGAGCGACTATGCCTGCCTGCTCGACCTTGATCCAG AAGTAATCTCATGGCGCTGCATGACGCGGCCAGTGCTCAACGATTCCACCGCTCGCAAGCCGCGCCACCACTTCGTAGAC TTCTTAGTCGAGACAGAGCAGGAGGCGTTGCTCGTTGAAGTATGGCGCGGAAAGCCAGACATCATCACCTGGCTTCCCGG CGTGGCCGCCCGAAGGGGTTATCGCTACCAGGCGATTGCCATGTGCGACGTAGATCCCATTCGCCTTCAGAACGCGCGTG ACCTCGTCAGATACGCGGACCGTGAGGCCACCCTCGGCGACCGCATCCGTATTCTGGCTGGCCTCGACGAGATGGGGTCG CTCTCACTCGCCGAATGCCTCTCCGCGGTCCGGGAGGGAACAGCAATGGGATCTGTCGCCAGCATGATCCTGCGCGGCCT GATCGAGGTCGACCTCGACGAGAAACTGCTTGGCCCGGACACGATCGTCCGCCGCGCTCGATCATAG
Upstream 100 bases:
>100_bases AGCAACTCCATCGCCCTCACTTTCCGAATACGAATAGGTTGACCGGATCCGGGACGGGTCCCGGTGCCGCCACCACATCC TATTCATCGGAGGGCGGGTC
Downstream 100 bases:
>100_bases GAGTTCAGTGATGAAATCGGCAAAACCTGACGAGCGGAAGATCTCGCTCGAACTGACCACCTATGCCAATTCTCTGCGCA TCGCGTTGAGGCGGTGCGGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 208; Mature: 207
Protein sequence:
>208_residues MTTSTAHAAGDDACDLRKIYKPRFPFNTVKCIGRTLFRSQQASDYACLLDLDPEVISWRCMTRPVLNDSTARKPRHHFVD FLVETEQEALLVEVWRGKPDIITWLPGVAARRGYRYQAIAMCDVDPIRLQNARDLVRYADREATLGDRIRILAGLDEMGS LSLAECLSAVREGTAMGSVASMILRGLIEVDLDEKLLGPDTIVRRARS
Sequences:
>Translated_208_residues MTTSTAHAAGDDACDLRKIYKPRFPFNTVKCIGRTLFRSQQASDYACLLDLDPEVISWRCMTRPVLNDSTARKPRHHFVD FLVETEQEALLVEVWRGKPDIITWLPGVAARRGYRYQAIAMCDVDPIRLQNARDLVRYADREATLGDRIRILAGLDEMGS LSLAECLSAVREGTAMGSVASMILRGLIEVDLDEKLLGPDTIVRRARS >Mature_207_residues TTSTAHAAGDDACDLRKIYKPRFPFNTVKCIGRTLFRSQQASDYACLLDLDPEVISWRCMTRPVLNDSTARKPRHHFVDF LVETEQEALLVEVWRGKPDIITWLPGVAARRGYRYQAIAMCDVDPIRLQNARDLVRYADREATLGDRIRILAGLDEMGSL SLAECLSAVREGTAMGSVASMILRGLIEVDLDEKLLGPDTIVRRARS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23353; Mature: 23222
Theoretical pI: Translated: 7.30; Mature: 7.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTSTAHAAGDDACDLRKIYKPRFPFNTVKCIGRTLFRSQQASDYACLLDLDPEVISWRC CCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHH MTRPVLNDSTARKPRHHFVDFLVETEQEALLVEVWRGKPDIITWLPGVAARRGYRYQAIA HCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCEEEECCCHHHHCCCCEEEEE MCDVDPIRLQNARDLVRYADREATLGDRIRILAGLDEMGSLSLAECLSAVREGTAMGSVA EECCCCHHHCCHHHHHHHHCCCCCCCHHEEEEECCCCCCCCCHHHHHHHHHCCCCHHHHH SMILRGLIEVDLDEKLLGPDTIVRRARS HHHHHHHHHCCCCCHHCCHHHHHHHCCC >Mature Secondary Structure TTSTAHAAGDDACDLRKIYKPRFPFNTVKCIGRTLFRSQQASDYACLLDLDPEVISWRC CCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHH MTRPVLNDSTARKPRHHFVDFLVETEQEALLVEVWRGKPDIITWLPGVAARRGYRYQAIA HCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCEEEECCCHHHHCCCCEEEEE MCDVDPIRLQNARDLVRYADREATLGDRIRILAGLDEMGSLSLAECLSAVREGTAMGSVA EECCCCHHHCCHHHHHHHHCCCCCCCHHEEEEECCCCCCCCCHHHHHHHHHCCCCHHHHH SMILRGLIEVDLDEKLLGPDTIVRRARS HHHHHHHHHCCCCCHHCCHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA