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The map label for this gene is exbD [H]

Identifier: 150396366

GI number: 150396366

Start: 1218412

End: 1218837

Strand: Direct

Name: exbD [H]

Synonym: Smed_1147

Alternate gene names: 150396366

Gene position: 1218412-1218837 (Clockwise)

Preceding gene: 150396365

Following gene: 150396367

Centisome position: 32.22

GC content: 60.8

Gene sequence:

>426_bases
ATGGCAGGAAAAACATCCGAAGGCAGCGGCGATCTCGACGAGAACAGCGAGATCAACGTTACCCCTTTCATCGACGTCAT
GCTCGTGCTCCTCATCATCTTCATGGTGGCTGCGCCGCTGGCGACCGTCGACATGAAGGTCGATCTGCCGCAATCGGTGG
CAAAACCCGCGCCGCGTGACGACAAACCGGTCTTCGTCACCCTGAAGGCCGATCTCACGCTTGCCGTCGGCAATGAAGAG
GCCCCTCGCGAGGCCTTTGTGTCGGAGTTGAACCGGACAACCGGCGGCAATACGGAGACGCGCGTGCTCCTGCGCGCCGA
TCGGCTGGTCGACTATGGAGAACTGATGACGGTGATGAACCTCATTCAGAATGCCGGCTACGCCAAGATCGCACTCGTCG
GTCTGGAAGCAGCGCCCGCCCGCTAG

Upstream 100 bases:

>100_bases
AGCCGCGATCTGGATCATCGTCACGCCCGCAAAGCGTCGCGCCGCCAGGACAGCTTCACCCACGGCCCAGACGCTATCGC
CAGAATCGGATAAGCAAGGG

Downstream 100 bases:

>100_bases
GCAACCTCCTTATGCTCTGCACCGCCATGCCGACACACGACTGACGGACGCCTTTTTGCGTGCGCAGATATGCAGTCGCT
TGAAACCGGACGTGCGGCGA

Product: TonB system transport protein ExbD type-1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 140

Protein sequence:

>141_residues
MAGKTSEGSGDLDENSEINVTPFIDVMLVLLIIFMVAAPLATVDMKVDLPQSVAKPAPRDDKPVFVTLKADLTLAVGNEE
APREAFVSELNRTTGGNTETRVLLRADRLVDYGELMTVMNLIQNAGYAKIALVGLEAAPAR

Sequences:

>Translated_141_residues
MAGKTSEGSGDLDENSEINVTPFIDVMLVLLIIFMVAAPLATVDMKVDLPQSVAKPAPRDDKPVFVTLKADLTLAVGNEE
APREAFVSELNRTTGGNTETRVLLRADRLVDYGELMTVMNLIQNAGYAKIALVGLEAAPAR
>Mature_140_residues
AGKTSEGSGDLDENSEINVTPFIDVMLVLLIIFMVAAPLATVDMKVDLPQSVAKPAPRDDKPVFVTLKADLTLAVGNEEA
PREAFVSELNRTTGGNTETRVLLRADRLVDYGELMTVMNLIQNAGYAKIALVGLEAAPAR

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=141, Percent_Identity=53.1914893617021, Blast_Score=147, Evalue=2e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400
- InterPro:   IPR014170 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15115; Mature: 14983

Theoretical pI: Translated: 4.29; Mature: 4.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGKTSEGSGDLDENSEINVTPFIDVMLVLLIIFMVAAPLATVDMKVDLPQSVAKPAPRD
CCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCHHEEEEEECCCHHHCCCCCCC
DKPVFVTLKADLTLAVGNEEAPREAFVSELNRTTGGNTETRVLLRADRLVDYGELMTVMN
CCCEEEEEECCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHH
LIQNAGYAKIALVGLEAAPAR
HHHCCCCEEEEEEECCCCCCC
>Mature Secondary Structure 
AGKTSEGSGDLDENSEINVTPFIDVMLVLLIIFMVAAPLATVDMKVDLPQSVAKPAPRD
CCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCHHEEEEEECCCHHHCCCCCCC
DKPVFVTLKADLTLAVGNEEAPREAFVSELNRTTGGNTETRVLLRADRLVDYGELMTVMN
CCCEEEEEECCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHH
LIQNAGYAKIALVGLEAAPAR
HHHCCCCEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8437515 [H]