Click here to switch to the map view.

The map label for this gene is 150395731

Identifier: 150395731

GI number: 150395731

Start: 550909

End: 551967

Strand: Direct

Name: 150395731

Synonym: Smed_0507

Alternate gene names: NA

Gene position: 550909-551967 (Clockwise)

Preceding gene: 150395729

Following gene: 150395732

Centisome position: 14.57

GC content: 64.49

Gene sequence:

>1059_bases
ATGAAAGACGGCTTCGCGGGCCTCGTCCGCACCCATGTCAAACGCACTGCGATCAGCGGTGGTCTTGAGGCTGCGCATCT
GCTTGCGCGTGCGCGTCTGATGGGGGCGGCCCGTGGTCGCGGGGCAGTCTTTACACTGCACCACGTCCGCCCGAAGGTTC
CGCGGAGCTTCGATCCCAATGCCCATCTGGAAATCACACCGGAATTCCTCGAGGATGCGATCCTGACATTGAAGCGGGAC
GGCTATCGCTTCATCCCTTTGGACGAGCTGCCTTCCAGCCTGACTTTCGCCGGCACCCGACCCCTTGCCTGTTTCACCCT
CGACGACGGTTACCGCAATAATCTCGACCACGCGCTGCCCGTCTTCGAGCGGCACGGCGTGCCTTTCACCGTCTTCGTCA
CGGCCGGCTACGCCGAGCGCACCCACACGCTCTGGTGGGAGACACTCGCCGAGCTCCTGTCCGTCAGCCGAAGGTTCCAC
TTCGATTTCGGCACGGGCGAGGAAATAGTGGCGAGCGGGAGCCTTCCACAGAAGCAAGCCGCCTTCGACCGGCTCGCCAC
CTATATCCATGAAAGTGGCGAGGCGGACGCCATCGCTGCACTGAATCGGGCCGCTTGCGAACACGGCATCGATCCTCTTG
CCATCACCGAGCGATTGACGCTGGACGAGGCGGGACTTCGCAGGCTGATCAGGTGCCCGCTTGCAAGCCTCGGCGGGCAC
ACGATCAGCCATCGCGCAATCGCGCGGCTAGGCGACGGCGAAGCCCGCCGCGAAATCGCCGGTTCCGCCGGGTGCGTAGA
GGCGATCACGGGTCGCCGCCCGTCCACCTTCGCGTATCCCTATGGTGACCGGCTTTCGGTGTCGCCACGCGATCACCGGC
TGGTGGCGGAGCTTGGTATTTCCGTCGCGGTGACGACGCAGCCGGCCATGCTTGCCGAGACCACGAATCTCCATGCGCTG
CCGCGGATTTCGCTCAATGGCCATTTCCAGAACGCGCGCTATGTCACCGCGCTCGGATCCGGTATTCCGTTCCGGCTCTT
CGCCCGGGGCGCAGGCTGA

Upstream 100 bases:

>100_bases
CCCGCTCTTACGCCGCTCAAAGCCGATTTAGCAAGGCTTAACCCGACAAAGGTTACCGTCTGGCCCCGGCAAGGCCGATG
CAGAGATTTGAGAAGATAAG

Downstream 100 bases:

>100_bases
GCGAGCCACGCATTGCCGCTCTTGGAACAGCGCCCGTTCCCGGCACAACATCTCAGCGATTGCAAACAAGGCGGTACTAC
TTTAGCGGTAGCGCCGGACC

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Polysaccharide Deacetylase Protein; Polysaccharide Deacetylase Family Protein; Polysaccharide Deacetylase Domain Protein; Polysaccharide Deacetylase Domain-Containing Protein; Glycosyl Transferase Family Polysaccharide Deacetylase

Number of amino acids: Translated: 352; Mature: 352

Protein sequence:

>352_residues
MKDGFAGLVRTHVKRTAISGGLEAAHLLARARLMGAARGRGAVFTLHHVRPKVPRSFDPNAHLEITPEFLEDAILTLKRD
GYRFIPLDELPSSLTFAGTRPLACFTLDDGYRNNLDHALPVFERHGVPFTVFVTAGYAERTHTLWWETLAELLSVSRRFH
FDFGTGEEIVASGSLPQKQAAFDRLATYIHESGEADAIAALNRAACEHGIDPLAITERLTLDEAGLRRLIRCPLASLGGH
TISHRAIARLGDGEARREIAGSAGCVEAITGRRPSTFAYPYGDRLSVSPRDHRLVAELGISVAVTTQPAMLAETTNLHAL
PRISLNGHFQNARYVTALGSGIPFRLFARGAG

Sequences:

>Translated_352_residues
MKDGFAGLVRTHVKRTAISGGLEAAHLLARARLMGAARGRGAVFTLHHVRPKVPRSFDPNAHLEITPEFLEDAILTLKRD
GYRFIPLDELPSSLTFAGTRPLACFTLDDGYRNNLDHALPVFERHGVPFTVFVTAGYAERTHTLWWETLAELLSVSRRFH
FDFGTGEEIVASGSLPQKQAAFDRLATYIHESGEADAIAALNRAACEHGIDPLAITERLTLDEAGLRRLIRCPLASLGGH
TISHRAIARLGDGEARREIAGSAGCVEAITGRRPSTFAYPYGDRLSVSPRDHRLVAELGISVAVTTQPAMLAETTNLHAL
PRISLNGHFQNARYVTALGSGIPFRLFARGAG
>Mature_352_residues
MKDGFAGLVRTHVKRTAISGGLEAAHLLARARLMGAARGRGAVFTLHHVRPKVPRSFDPNAHLEITPEFLEDAILTLKRD
GYRFIPLDELPSSLTFAGTRPLACFTLDDGYRNNLDHALPVFERHGVPFTVFVTAGYAERTHTLWWETLAELLSVSRRFH
FDFGTGEEIVASGSLPQKQAAFDRLATYIHESGEADAIAALNRAACEHGIDPLAITERLTLDEAGLRRLIRCPLASLGGH
TISHRAIARLGDGEARREIAGSAGCVEAITGRRPSTFAYPYGDRLSVSPRDHRLVAELGISVAVTTQPAMLAETTNLHAL
PRISLNGHFQNARYVTALGSGIPFRLFARGAG

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38341; Mature: 38341

Theoretical pI: Translated: 8.64; Mature: 8.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDGFAGLVRTHVKRTAISGGLEAAHLLARARLMGAARGRGAVFTLHHVRPKVPRSFDPN
CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCC
AHLEITPEFLEDAILTLKRDGYRFIPLDELPSSLTFAGTRPLACFTLDDGYRNNLDHALP
CCEEECHHHHHHHHHHHCCCCEEEEEHHHCCCCEEECCCCCEEEEEECCCCCCCCHHHCC
VFERHGVPFTVFVTAGYAERTHTLWWETLAELLSVSRRFHFDFGTGEEIVASGSLPQKQA
HHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCEEECCCCCHHHH
AFDRLATYIHESGEADAIAALNRAACEHGIDPLAITERLTLDEAGLRRLIRCPLASLGGH
HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHCCHHHHCCC
TISHRAIARLGDGEARREIAGSAGCVEAITGRRPSTFAYPYGDRLSVSPRDHRLVAELGI
HHHHHHHHHCCCCHHHHHHCCCCCHHHHHHCCCCCCEECCCCCCEECCCCHHHHHHHHCC
SVAVTTQPAMLAETTNLHALPRISLNGHFQNARYVTALGSGIPFRLFARGAG
EEEEECCCHHEEECCCCCCCEEEEECCCCCCCEEEEEECCCCCEEEEECCCC
>Mature Secondary Structure
MKDGFAGLVRTHVKRTAISGGLEAAHLLARARLMGAARGRGAVFTLHHVRPKVPRSFDPN
CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCC
AHLEITPEFLEDAILTLKRDGYRFIPLDELPSSLTFAGTRPLACFTLDDGYRNNLDHALP
CCEEECHHHHHHHHHHHCCCCEEEEEHHHCCCCEEECCCCCEEEEEECCCCCCCCHHHCC
VFERHGVPFTVFVTAGYAERTHTLWWETLAELLSVSRRFHFDFGTGEEIVASGSLPQKQA
HHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCEEECCCCCHHHH
AFDRLATYIHESGEADAIAALNRAACEHGIDPLAITERLTLDEAGLRRLIRCPLASLGGH
HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHCCHHHHCCC
TISHRAIARLGDGEARREIAGSAGCVEAITGRRPSTFAYPYGDRLSVSPRDHRLVAELGI
HHHHHHHHHCCCCHHHHHHCCCCCHHHHHHCCCCCCEECCCCCCEECCCCHHHHHHHHCC
SVAVTTQPAMLAETTNLHALPRISLNGHFQNARYVTALGSGIPFRLFARGAG
EEEEECCCHHEEECCCCCCCEEEEECCCCCCCEEEEEECCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA