| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is folD1
Identifier: 150395517
GI number: 150395517
Start: 308111
End: 309010
Strand: Direct
Name: folD1
Synonym: Smed_0290
Alternate gene names: 150395517
Gene position: 308111-309010 (Clockwise)
Preceding gene: 150395515
Following gene: 150395519
Centisome position: 8.15
GC content: 62.89
Gene sequence:
>900_bases ATGACGACTGTGATTGATGGCAAGGATGTTGCTGCTTCGGTCATCGAAACCGTAAAAACCGCCACCAGCACGCTGGAACG CGAAACGGGCGTGCGCGCGGGCCTCGCGGTCGTCATTGTCGGGGACGATCCGGCAAGCCACACTTATGTTTCGGCGAAGA GCAGGATGGCCAAGGAATGCGGCTTTCTGTCCGTCCAGCATACGCTGCCGGAGGAGACGTCGCAGGAGGAACTGGCGGCG CTTGTCGCTCAGCTCAATGCGGACGCGGCCATCCACGGCATTCTCGTGCAACTGCCTTTGCCGAAGCATCTCCGATCGGA GCCGATCATCCAATCGATCCTCCCCGAGAAGGACGTCGACGGCCTGCATGTGGTCAATGCGGGCAAGCTTGCAACCGGCG ACCTCGAAGGTGGGCTGGTCTCCTGCACGCCGGCCGGTGCGATGGTTTTCGTGCGCCGGACGTATGGCGACGACCTCTCC GGACTCAGCGCGGTCGTGATCGGCCGCTCCAACCTCTTCGGCAAGCCGATGGGTGCCCTGCTCCTCGCAGCCAATGCGAC GGTTACGACGGCGCATTCGCGCACCAAGAACCTTCCGGAAGTTTGCCGAAATGCGGATATTCTCGTTGCTGCGGTCGGTC GTCCGGAGATGGTCAAGGCGGACTGGGTCAAGCCCGGTGCGATGGTGATCGACGTCGGCATCAACCGCGTTCCTGCGCCG GAGCGAGGCGAGGGTAAGACCAAGCTCGTCGGTGATGTCGCTTTCAAGGAGTGCGCCGAGCTCGCAAGCGTGATTACGCC TGTGCCGGGCGGCGTCGGACCCATGACGATCGCCATGCTGATGGCGAATACGATCATCGCCGCCCATCGCAAAGCCGGCC GTCGGCCGCCGAAGTTCTGA
Upstream 100 bases:
>100_bases GCAATTATGCGTTTGGAACAGCATAGGGCGCATGCAGGCAATCGCCGGATGCGGCTTGAATTAGAGTGTGCCGCGTTCGG GACAAATCGGGAGATACCCC
Downstream 100 bases:
>100_bases CGGCTGCCGCGCGACGCCGCACGACGCTACACAGTTTTCCCTGAATTGCGCTGGCGATCGGGTGCGGGCCCGGTCGAGGC TCGCACGATCAATTCGGCGC
Product: bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase
Products: NA
Alternate protein names: Methylenetetrahydrofolate dehydrogenase; Methenyltetrahydrofolate cyclohydrolase
Number of amino acids: Translated: 299; Mature: 298
Protein sequence:
>299_residues MTTVIDGKDVAASVIETVKTATSTLERETGVRAGLAVVIVGDDPASHTYVSAKSRMAKECGFLSVQHTLPEETSQEELAA LVAQLNADAAIHGILVQLPLPKHLRSEPIIQSILPEKDVDGLHVVNAGKLATGDLEGGLVSCTPAGAMVFVRRTYGDDLS GLSAVVIGRSNLFGKPMGALLLAANATVTTAHSRTKNLPEVCRNADILVAAVGRPEMVKADWVKPGAMVIDVGINRVPAP ERGEGKTKLVGDVAFKECAELASVITPVPGGVGPMTIAMLMANTIIAAHRKAGRRPPKF
Sequences:
>Translated_299_residues MTTVIDGKDVAASVIETVKTATSTLERETGVRAGLAVVIVGDDPASHTYVSAKSRMAKECGFLSVQHTLPEETSQEELAA LVAQLNADAAIHGILVQLPLPKHLRSEPIIQSILPEKDVDGLHVVNAGKLATGDLEGGLVSCTPAGAMVFVRRTYGDDLS GLSAVVIGRSNLFGKPMGALLLAANATVTTAHSRTKNLPEVCRNADILVAAVGRPEMVKADWVKPGAMVIDVGINRVPAP ERGEGKTKLVGDVAFKECAELASVITPVPGGVGPMTIAMLMANTIIAAHRKAGRRPPKF >Mature_298_residues TTVIDGKDVAASVIETVKTATSTLERETGVRAGLAVVIVGDDPASHTYVSAKSRMAKECGFLSVQHTLPEETSQEELAAL VAQLNADAAIHGILVQLPLPKHLRSEPIIQSILPEKDVDGLHVVNAGKLATGDLEGGLVSCTPAGAMVFVRRTYGDDLSG LSAVVIGRSNLFGKPMGALLLAANATVTTAHSRTKNLPEVCRNADILVAAVGRPEMVKADWVKPGAMVIDVGINRVPAPE RGEGKTKLVGDVAFKECAELASVITPVPGGVGPMTIAMLMANTIIAAHRKAGRRPPKF
Specific function: Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
COG id: COG0190
COG function: function code H; 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tetrahydrofolate dehydrogenase/cyclohydrolase family
Homologues:
Organism=Homo sapiens, GI222136639, Length=297, Percent_Identity=45.7912457912458, Blast_Score=258, Evalue=5e-69, Organism=Homo sapiens, GI222418558, Length=297, Percent_Identity=42.4242424242424, Blast_Score=206, Evalue=2e-53, Organism=Homo sapiens, GI94721354, Length=297, Percent_Identity=42.0875420875421, Blast_Score=193, Evalue=1e-49, Organism=Homo sapiens, GI36796743, Length=223, Percent_Identity=26.9058295964126, Blast_Score=89, Evalue=6e-18, Organism=Escherichia coli, GI1786741, Length=286, Percent_Identity=48.6013986013986, Blast_Score=240, Evalue=7e-65, Organism=Caenorhabditis elegans, GI17568735, Length=293, Percent_Identity=43.0034129692833, Blast_Score=217, Evalue=6e-57, Organism=Saccharomyces cerevisiae, GI6319558, Length=289, Percent_Identity=43.2525951557093, Blast_Score=237, Evalue=2e-63, Organism=Saccharomyces cerevisiae, GI6321643, Length=297, Percent_Identity=41.0774410774411, Blast_Score=216, Evalue=3e-57, Organism=Saccharomyces cerevisiae, GI6322933, Length=309, Percent_Identity=25.5663430420712, Blast_Score=74, Evalue=3e-14, Organism=Drosophila melanogaster, GI62472483, Length=290, Percent_Identity=45.8620689655172, Blast_Score=240, Evalue=1e-63, Organism=Drosophila melanogaster, GI45551871, Length=290, Percent_Identity=45.8620689655172, Blast_Score=240, Evalue=1e-63, Organism=Drosophila melanogaster, GI24645718, Length=290, Percent_Identity=45.8620689655172, Blast_Score=239, Evalue=1e-63, Organism=Drosophila melanogaster, GI17137370, Length=290, Percent_Identity=45.8620689655172, Blast_Score=239, Evalue=1e-63, Organism=Drosophila melanogaster, GI17136818, Length=305, Percent_Identity=44.2622950819672, Blast_Score=218, Evalue=4e-57, Organism=Drosophila melanogaster, GI17136816, Length=305, Percent_Identity=44.2622950819672, Blast_Score=218, Evalue=6e-57,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): FOLD1_SINMW (A6U669)
Other databases:
- EMBL: CP000738 - RefSeq: YP_001325984.1 - ProteinModelPortal: A6U669 - SMR: A6U669 - STRING: A6U669 - GeneID: 5321122 - GenomeReviews: CP000738_GR - KEGG: smd:Smed_0290 - eggNOG: COG0190 - HOGENOM: HBG328751 - OMA: TYVRNKQ - ProtClustDB: PRK14188 - BioCyc: SMED366394:SMED_0290-MONOMER - GO: GO:0005488 - HAMAP: MF_01576 - InterPro: IPR016040 - InterPro: IPR000672 - InterPro: IPR020630 - InterPro: IPR020867 - InterPro: IPR020631 - Gene3D: G3DSA:3.40.50.720 - PRINTS: PR00085
Pfam domain/function: PF00763 THF_DHG_CYH; PF02882 THF_DHG_CYH_C
EC number: =1.5.1.5; =3.5.4.9
Molecular weight: Translated: 31229; Mature: 31097
Theoretical pI: Translated: 7.59; Mature: 7.59
Prosite motif: PS00766 THF_DHG_CYH_1; PS00767 THF_DHG_CYH_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTVIDGKDVAASVIETVKTATSTLERETGVRAGLAVVIVGDDPASHTYVSAKSRMAKEC CCEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEHHHHHHHHHC GFLSVQHTLPEETSQEELAALVAQLNADAAIHGILVQLPLPKHLRSEPIIQSILPEKDVD CCEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCHHHCCCHHHHHHCCCCCCC GLHVVNAGKLATGDLEGGLVSCTPAGAMVFVRRTYGDDLSGLSAVVIGRSNLFGKPMGAL CEEEEECCCEEECCCCCCEEEECCCCEEEEEEECCCCCCCCCEEEEEECCCCCCCCHHHE LLAANATVTTAHSRTKNLPEVCRNADILVAAVGRPEMVKADWVKPGAMVIDVGINRVPAP EEECCCEEEECCHHCCCCHHHHCCCCEEEEECCCCCEEECCCCCCCCEEEEECCCCCCCC ERGEGKTKLVGDVAFKECAELASVITPVPGGVGPMTIAMLMANTIIAAHRKAGRRPPKF CCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure TTVIDGKDVAASVIETVKTATSTLERETGVRAGLAVVIVGDDPASHTYVSAKSRMAKEC CEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEHHHHHHHHHC GFLSVQHTLPEETSQEELAALVAQLNADAAIHGILVQLPLPKHLRSEPIIQSILPEKDVD CCEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCHHHCCCHHHHHHCCCCCCC GLHVVNAGKLATGDLEGGLVSCTPAGAMVFVRRTYGDDLSGLSAVVIGRSNLFGKPMGAL CEEEEECCCEEECCCCCCEEEECCCCEEEEEEECCCCCCCCCEEEEEECCCCCCCCHHHE LLAANATVTTAHSRTKNLPEVCRNADILVAAVGRPEMVKADWVKPGAMVIDVGINRVPAP EEECCCEEEECCHHCCCCHHHHCCCCEEEEECCCCCEEECCCCCCCCEEEEECCCCCCCC ERGEGKTKLVGDVAFKECAELASVITPVPGGVGPMTIAMLMANTIIAAHRKAGRRPPKF CCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA