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The map label for this gene is flgF [H]

Identifier: 150395479

GI number: 150395479

Start: 275280

End: 276005

Strand: Direct

Name: flgF [H]

Synonym: Smed_0252

Alternate gene names: 150395479

Gene position: 275280-276005 (Clockwise)

Preceding gene: 150395478

Following gene: 150395480

Centisome position: 7.28

GC content: 62.95

Gene sequence:

>726_bases
TTGCAGACCGGTCTTTATGTCGCGCTTTCGTCGCAGATGGCGCTTGAAAAGCGCCTGAACACGCTGGCTGACAACATTGC
CAACTCCAACACGGTGGGCTTCCGCGCGACGGAAGTGAAGTTCAACCAGGTGCTTGGCGACACCAAGCCGACCAAGGTGT
CCTACGTGTCCGAGGGCGAAGAATTCCTGAGCACGAAAACCGGAGCGCTCGCGCGCACGGGCTCCGCGCTCGACTTCGCG
GTCAAGGGTGACGCCTGGTTTTCGATCGACACGCCCGGCGGTCCGGCCCTGACGCGCGACGGACGGTTCACGCTGACCGA
GGCCGGCGAGCTCGTGACGATCAAGGGATATCCGGTGCTCGACGCCGGCGGCGCGCCGATCCAGCTGAACGGCGGTGCCG
GCGAAATTACCGTCGGCGCCGATGGAGCCATTCACCAGAACGGTGTCCAGGTCGCTCTGCTCGGGCTCCACGAGGCGGAT
TTCAGCAAAGGCTTCATGCGTTACGACAACAGCGCCGTCATGCCGGCCGCTCAACCGGAACCGGTCGTGGACCGTTTCGA
TGTCGGCGTGATGCAGGGCTTCCTGGAGGAGTCGAACGTGAACGCCGTCCAGGAAATGTCGCAGCTGATCATGATCACTC
GGGCCTTCGATAACGTCACCGCGCTGATGCGCGATAGCGAGGGATCGATCGACAAAGCCATCGAAACGCTCGGCGGCAGC
CGTTGA

Upstream 100 bases:

>100_bases
GGCTACGATCCGCTTGCGGTTTTCGGCTCCTCCAGCGGATACGGAATTTCTCCCGACCTGCTTCTGACCATCAACAATCT
GAAACTCGGGGGACGCTGAC

Downstream 100 bases:

>100_bases
TGATTTCGATGCAATCTTAGGCGGGACGGAACGGAATTCGGGATGGCACGTGAAGCCACTGAAAAATCTGCGGCATCGAC
GTCGCTGGCGGCGCTCGCCG

Product: flagellar basal body rod protein FlgF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MQTGLYVALSSQMALEKRLNTLADNIANSNTVGFRATEVKFNQVLGDTKPTKVSYVSEGEEFLSTKTGALARTGSALDFA
VKGDAWFSIDTPGGPALTRDGRFTLTEAGELVTIKGYPVLDAGGAPIQLNGGAGEITVGADGAIHQNGVQVALLGLHEAD
FSKGFMRYDNSAVMPAAQPEPVVDRFDVGVMQGFLEESNVNAVQEMSQLIMITRAFDNVTALMRDSEGSIDKAIETLGGS
R

Sequences:

>Translated_241_residues
MQTGLYVALSSQMALEKRLNTLADNIANSNTVGFRATEVKFNQVLGDTKPTKVSYVSEGEEFLSTKTGALARTGSALDFA
VKGDAWFSIDTPGGPALTRDGRFTLTEAGELVTIKGYPVLDAGGAPIQLNGGAGEITVGADGAIHQNGVQVALLGLHEAD
FSKGFMRYDNSAVMPAAQPEPVVDRFDVGVMQGFLEESNVNAVQEMSQLIMITRAFDNVTALMRDSEGSIDKAIETLGGS
R
>Mature_241_residues
MQTGLYVALSSQMALEKRLNTLADNIANSNTVGFRATEVKFNQVLGDTKPTKVSYVSEGEEFLSTKTGALARTGSALDFA
VKGDAWFSIDTPGGPALTRDGRFTLTEAGELVTIKGYPVLDAGGAPIQLNGGAGEITVGADGAIHQNGVQVALLGLHEAD
FSKGFMRYDNSAVMPAAQPEPVVDRFDVGVMQGFLEESNVNAVQEMSQLIMITRAFDNVTALMRDSEGSIDKAIETLGGS
R

Specific function: Unknown

COG id: COG4786

COG function: function code N; Flagellar basal body rod protein

Gene ontology:

Cell location: Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flagella basal body rod proteins family [H]

Homologues:

Organism=Escherichia coli, GI1787317, Length=237, Percent_Identity=32.0675105485232, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787318, Length=246, Percent_Identity=28.0487804878049, Blast_Score=70, Evalue=9e-14,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010930
- InterPro:   IPR001444
- InterPro:   IPR020013
- InterPro:   IPR012836 [H]

Pfam domain/function: PF06429 DUF1078; PF00460 Flg_bb_rod [H]

EC number: NA

Molecular weight: Translated: 25497; Mature: 25497

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTGLYVALSSQMALEKRLNTLADNIANSNTVGFRATEVKFNQVLGDTKPTKVSYVSEGE
CCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHCCCCCCEEEEHHCCH
EFLSTKTGALARTGSALDFAVKGDAWFSIDTPGGPALTRDGRFTLTEAGELVTIKGYPVL
HHHHHCCCCCEECCCCEEEEEECCEEEEEECCCCCCEECCCCEEEECCCCEEEECCCEEE
DAGGAPIQLNGGAGEITVGADGAIHQNGVQVALLGLHEADFSKGFMRYDNSAVMPAAQPE
ECCCCEEEECCCCCEEEECCCCCEECCCEEEEEEEEECCCHHCCHHEECCCEECCCCCCC
PVVDRFDVGVMQGFLEESNVNAVQEMSQLIMITRAFDNVTALMRDSEGSIDKAIETLGGS
CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHCCC
R
C
>Mature Secondary Structure
MQTGLYVALSSQMALEKRLNTLADNIANSNTVGFRATEVKFNQVLGDTKPTKVSYVSEGE
CCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHCCCCCCEEEEHHCCH
EFLSTKTGALARTGSALDFAVKGDAWFSIDTPGGPALTRDGRFTLTEAGELVTIKGYPVL
HHHHHCCCCCEECCCCEEEEEECCEEEEEECCCCCCEECCCCEEEECCCCEEEECCCEEE
DAGGAPIQLNGGAGEITVGADGAIHQNGVQVALLGLHEADFSKGFMRYDNSAVMPAAQPE
ECCCCEEEECCCCCEEEECCCCCEECCCEEEEEEEEECCCHHCCHHEECCCEECCCCCCC
PVVDRFDVGVMQGFLEESNVNAVQEMSQLIMITRAFDNVTALMRDSEGSIDKAIETLGGS
CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHCCC
R
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9858749; 11481430 [H]