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The map label for this gene is rbsC [H]

Identifier: 150395455

GI number: 150395455

Start: 252860

End: 253864

Strand: Direct

Name: rbsC [H]

Synonym: Smed_0228

Alternate gene names: 150395455

Gene position: 252860-253864 (Clockwise)

Preceding gene: 150395454

Following gene: 150395456

Centisome position: 6.69

GC content: 62.29

Gene sequence:

>1005_bases
ATGGCTGACGCGCAAATCTCTCCCCGCAACATTCCCGACCGACTGGAGGGGCGCGGCGCTCGCCTCCTGAAGAGCTGGGA
AGCGCTGCTCGTGGTGGTCGCCGCCGTGATCTTCCTCGGCAATTCGCTGGCGTCGCCTTATTTCCTCGATCCTTGGAACC
TCTCGGACGCCACGTTCAACTTCACCGAAAAGGCGATGATCGCCTTTGCCATGGCACTGGTGATCATCTCCGGCGAGATC
GACCTGTCGGTTGCGTCCATCATTGCGCTCGCCTCGACCGCCATGGGTTACGCCGTGCAGTTCGGTTTCGACACCCCGGC
GCTCGTCGCGATCGGGCTCGGCGTCGGTCTCCTCTGCGGCCTCGTCAATGGAGTGCTGATCACCGGTCTTGACCTTCCGT
CCATCGTGGTGACGATCGGCACCATGAGCCTGTTTCGCGGGCTCTCCTTTGTCGTCCTCGGCGATCAGGCCTTTACCGGT
TATCCCGAAAGCTTCGCCTGGTTCGGCCAGGGCTACGTCTGGTGGGTCTTCTCCTTCGAATTCACTCTCTTCGTCGTACT
CGCCGTCATTTATGGAGTTCTTCTCCACAGAACGAATTTCGGTCGCGCCGTCTATGCCATCGGCAACAATCAGACGGCCG
CGCTCTTCTCCGGCGTGCGCGTGCCCCGGGTCAAATTCACGCTCTTCCTGTTGACGGGCCTGCTGGCCGGGCTCGCCTCG
GTCTGCCTCACCTCGCGGCTCGGCTCTACACGCCCATCGATCGCGCTCGGCTGGGAACTCGAGGTCGTGACCATGGTGGT
GCTTGGAGGCGTCAGCATTCTCGGCGGCTCCGGCACGATACCCGGTATCGTGTTGGCGGCGCTGATCATGGGCATGGTCA
CCTTCGGCTTCGGCCTTTTGAACGTGCCCGGCATCGTCATGTCGATCTTCATCGGCCTGCTCCTGATCTCGGTCATCGCG
CTGCCGATCCTCTGGCAGCGTGCCCGCCGCCGTCCTGTTCATTGA

Upstream 100 bases:

>100_bases
TGGCGATATCCGGAACGGTCATCATCATCGCGGTTGCCGTCAATGCCCGCGCCGAGCGGCGCAAGGGCAGGGTCATTCTC
AAGAAAGCGGAGGCGGTCTG

Downstream 100 bases:

>100_bases
GGTGGAAGTCATGGAAAAATACGCCTTCCGCATGCGACTCCATCCCGGCAAGGCCGCCGAATACCAGGCGCGTCACGACG
CGATCCGGCCGGAGCTGGTG

Product: monosaccharide-transporting ATPase

Products: ADP; phosphate; arabinose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 333

Protein sequence:

>334_residues
MADAQISPRNIPDRLEGRGARLLKSWEALLVVVAAVIFLGNSLASPYFLDPWNLSDATFNFTEKAMIAFAMALVIISGEI
DLSVASIIALASTAMGYAVQFGFDTPALVAIGLGVGLLCGLVNGVLITGLDLPSIVVTIGTMSLFRGLSFVVLGDQAFTG
YPESFAWFGQGYVWWVFSFEFTLFVVLAVIYGVLLHRTNFGRAVYAIGNNQTAALFSGVRVPRVKFTLFLLTGLLAGLAS
VCLTSRLGSTRPSIALGWELEVVTMVVLGGVSILGGSGTIPGIVLAALIMGMVTFGFGLLNVPGIVMSIFIGLLLISVIA
LPILWQRARRRPVH

Sequences:

>Translated_334_residues
MADAQISPRNIPDRLEGRGARLLKSWEALLVVVAAVIFLGNSLASPYFLDPWNLSDATFNFTEKAMIAFAMALVIISGEI
DLSVASIIALASTAMGYAVQFGFDTPALVAIGLGVGLLCGLVNGVLITGLDLPSIVVTIGTMSLFRGLSFVVLGDQAFTG
YPESFAWFGQGYVWWVFSFEFTLFVVLAVIYGVLLHRTNFGRAVYAIGNNQTAALFSGVRVPRVKFTLFLLTGLLAGLAS
VCLTSRLGSTRPSIALGWELEVVTMVVLGGVSILGGSGTIPGIVLAALIMGMVTFGFGLLNVPGIVMSIFIGLLLISVIA
LPILWQRARRRPVH
>Mature_333_residues
ADAQISPRNIPDRLEGRGARLLKSWEALLVVVAAVIFLGNSLASPYFLDPWNLSDATFNFTEKAMIAFAMALVIISGEID
LSVASIIALASTAMGYAVQFGFDTPALVAIGLGVGLLCGLVNGVLITGLDLPSIVVTIGTMSLFRGLSFVVLGDQAFTGY
PESFAWFGQGYVWWVFSFEFTLFVVLAVIYGVLLHRTNFGRAVYAIGNNQTAALFSGVRVPRVKFTLFLLTGLLAGLASV
CLTSRLGSTRPSIALGWELEVVTMVVLGGVSILGGSGTIPGIVLAALIMGMVTFGFGLLNVPGIVMSIFIGLLLISVIAL
PILWQRARRRPVH

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693152, Length=308, Percent_Identity=35.7142857142857, Blast_Score=149, Evalue=4e-37,
Organism=Escherichia coli, GI1790191, Length=290, Percent_Identity=35.8620689655172, Blast_Score=127, Evalue=8e-31,
Organism=Escherichia coli, GI1788896, Length=306, Percent_Identity=32.3529411764706, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1787794, Length=305, Percent_Identity=33.1147540983607, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1790524, Length=299, Percent_Identity=30.1003344481605, Blast_Score=111, Evalue=7e-26,
Organism=Escherichia coli, GI87082395, Length=285, Percent_Identity=31.2280701754386, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1789992, Length=120, Percent_Identity=40, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787793, Length=282, Percent_Identity=31.5602836879433, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI145693214, Length=232, Percent_Identity=30.6034482758621, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1788471, Length=256, Percent_Identity=27.734375, Blast_Score=69, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35521; Mature: 35390

Theoretical pI: Translated: 8.69; Mature: 8.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADAQISPRNIPDRLEGRGARLLKSWEALLVVVAAVIFLGNSLASPYFLDPWNLSDATFN
CCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCC
FTEKAMIAFAMALVIISGEIDLSVASIIALASTAMGYAVQFGFDTPALVAIGLGVGLLCG
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHH
LVNGVLITGLDLPSIVVTIGTMSLFRGLSFVVLGDQAFTGYPESFAWFGQGYVWWVFSFE
HHHHHHEECCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHCCCEEEEEHHHH
FTLFVVLAVIYGVLLHRTNFGRAVYAIGNNQTAALFSGVRVPRVKFTLFLLTGLLAGLAS
HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
VCLTSRLGSTRPSIALGWELEVVTMVVLGGVSILGGSGTIPGIVLAALIMGMVTFGFGLL
HHHHHHCCCCCCCEEECCHHHHHHHHHHCCHHEECCCCCHHHHHHHHHHHHHHHHHHHHH
NVPGIVMSIFIGLLLISVIALPILWQRARRRPVH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
ADAQISPRNIPDRLEGRGARLLKSWEALLVVVAAVIFLGNSLASPYFLDPWNLSDATFN
CCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCC
FTEKAMIAFAMALVIISGEIDLSVASIIALASTAMGYAVQFGFDTPALVAIGLGVGLLCG
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHH
LVNGVLITGLDLPSIVVTIGTMSLFRGLSFVVLGDQAFTGYPESFAWFGQGYVWWVFSFE
HHHHHHEECCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHCCCEEEEEHHHH
FTLFVVLAVIYGVLLHRTNFGRAVYAIGNNQTAALFSGVRVPRVKFTLFLLTGLLAGLAS
HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
VCLTSRLGSTRPSIALGWELEVVTMVVLGGVSILGGSGTIPGIVLAALIMGMVTFGFGLL
HHHHHHCCCCCCCEEECCHHHHHHHHHHCCHHEECCCCCHHHHHHHHHHHHHHHHHHHHH
NVPGIVMSIFIGLLLISVIALPILWQRARRRPVH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; arabinose [Periplasm]; H2O [C]

Specific reaction: ATP + arabinose [Periplasm] + H2O = ADP + phosphate + arabinose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]