| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is hisD [H]
Identifier: 150395435
GI number: 150395435
Start: 235116
End: 236420
Strand: Direct
Name: hisD [H]
Synonym: Smed_0208
Alternate gene names: 150395435
Gene position: 235116-236420 (Clockwise)
Preceding gene: 150395434
Following gene: 150395436
Centisome position: 6.22
GC content: 64.6
Gene sequence:
>1305_bases TTGGCAATCAGGCTGAACTATCTCGATACCGGCTTTGAGCGCGATTTCGCCGCATTCCTGACGACCAAGCGGGAAGTTTC CGAAGACGTAAACGCCGTCGTGCGCGACATTATCGACGATGTCCGCGCGCGCGGCGATGCGGCGCTTGCAGATTATTCGG CGCGTTTTGACGGAATAGACTTCAATGTCACGGGCATGGCGGTGACGGCGGCGGAGATAGATGCGGCGATCCACGCCGTT GCTCCGGAGGTTCTCGGCGCCCTGAAGGTCGCCGCGACCCGCATCGAGGCGCATCACCGGCGGCAATTGCCGAAGGACGA CATCTATGAAGACCAGATGGGCGTCGGCCTCGGCTCCCGCTGGACGCCGATCGATGCGGTGGGCCTCTATGTTCCGGGTG GCACGGCGAGCTATCCGAGCTCGGTTCTGATGAACGCTCTGCCGGCAAAGGTCGCCGGCGTCCCCCGCATCGTCATGGTC GTGCCGGCAATGGGCGGTGCGGTCAATCCTGCGGTGCTTGCGGCGGCGCGGCTCGCCGGCGTGGAAGAAATCTATCGCAT CGGTGGTGCCCAGGCCGTCGCGGCCCTTGCCTACGGGACCGGGACGATCGCGCCGGTGGCCAAAATCATGGGCCCCGGAA ACGCCTATGTCGCGGCCGCCAAGCGACAGGTTTTCGGCACCGTCGGCATCGACATGATCGCCGGACCTTCGGAAGTGCTG GTGATTGCGGATCGCGACAACGATCCGGATTGGATCGCCGCGGACATGCTTGCTCAGGCAGAGCACGATGCCGGCGCTCA GGCGATCCTGATCACCGACGATGCCGCTTTCGGCGATGCAGTCGAAGAGGCTGTGGAGCGTCAGTTGAAGACGCTGCCGC GTGCCGACACGGCGGCAGCGAGCTGGCGCGATTTCGGTGCCATCATTCTGGTTCCGGATTTCGACAAGGCCATCCCGCTC GCCAACCGCATCGCTCCCGAACATCTCGAACTGGCGACGGCCGATCCGGACGCGATGGTCCCCGCCATCCGCAATGCCGG CGCGATCTTCATCGGCAGGCACACGCCCGAAGTCATCGGCGATTATGTGGGCGGTTCCAACCACGTGCTGCCGACGGCGC GTTCGGCGCGCTTCTCGTCCGGCCTCGGCGTGCTCGACTATATGAAGCGAACGTCTATCCTGCGGCTCGATCCGGAACAG TTGCGCATACTCGGCCCCGCCGCGATCGCGCTGGCGAGATCGGAAGGGCTCGAGGCTCACGCCCGATCGGTCGCAATCCG CCTCAACCTCGGGGAAAAGGGATGA
Upstream 100 bases:
>100_bases CGGCGCCTGGGAGACGGCGTTCAAGCCGCGTCACCCCGAAGGCGCCTGAGCCTCTCCGCTTGAGCACCTCCGCCGGCCAA CATCCAAAAGGATCATCGCA
Downstream 100 bases:
>100_bases GGGCCGATCGCAATCTGCGCCTCTGCGATGTCGTGCTGGACGAGACGATCGGCCGCTCGACGCCGGATGTGGAGCACGAG CGCGCAGTTGCGATCTTCGA
Product: histidinol dehydrogenase
Products: NA
Alternate protein names: HDH 1 [H]
Number of amino acids: Translated: 434; Mature: 433
Protein sequence:
>434_residues MAIRLNYLDTGFERDFAAFLTTKREVSEDVNAVVRDIIDDVRARGDAALADYSARFDGIDFNVTGMAVTAAEIDAAIHAV APEVLGALKVAATRIEAHHRRQLPKDDIYEDQMGVGLGSRWTPIDAVGLYVPGGTASYPSSVLMNALPAKVAGVPRIVMV VPAMGGAVNPAVLAAARLAGVEEIYRIGGAQAVAALAYGTGTIAPVAKIMGPGNAYVAAAKRQVFGTVGIDMIAGPSEVL VIADRDNDPDWIAADMLAQAEHDAGAQAILITDDAAFGDAVEEAVERQLKTLPRADTAAASWRDFGAIILVPDFDKAIPL ANRIAPEHLELATADPDAMVPAIRNAGAIFIGRHTPEVIGDYVGGSNHVLPTARSARFSSGLGVLDYMKRTSILRLDPEQ LRILGPAAIALARSEGLEAHARSVAIRLNLGEKG
Sequences:
>Translated_434_residues MAIRLNYLDTGFERDFAAFLTTKREVSEDVNAVVRDIIDDVRARGDAALADYSARFDGIDFNVTGMAVTAAEIDAAIHAV APEVLGALKVAATRIEAHHRRQLPKDDIYEDQMGVGLGSRWTPIDAVGLYVPGGTASYPSSVLMNALPAKVAGVPRIVMV VPAMGGAVNPAVLAAARLAGVEEIYRIGGAQAVAALAYGTGTIAPVAKIMGPGNAYVAAAKRQVFGTVGIDMIAGPSEVL VIADRDNDPDWIAADMLAQAEHDAGAQAILITDDAAFGDAVEEAVERQLKTLPRADTAAASWRDFGAIILVPDFDKAIPL ANRIAPEHLELATADPDAMVPAIRNAGAIFIGRHTPEVIGDYVGGSNHVLPTARSARFSSGLGVLDYMKRTSILRLDPEQ LRILGPAAIALARSEGLEAHARSVAIRLNLGEKG >Mature_433_residues AIRLNYLDTGFERDFAAFLTTKREVSEDVNAVVRDIIDDVRARGDAALADYSARFDGIDFNVTGMAVTAAEIDAAIHAVA PEVLGALKVAATRIEAHHRRQLPKDDIYEDQMGVGLGSRWTPIDAVGLYVPGGTASYPSSVLMNALPAKVAGVPRIVMVV PAMGGAVNPAVLAAARLAGVEEIYRIGGAQAVAALAYGTGTIAPVAKIMGPGNAYVAAAKRQVFGTVGIDMIAGPSEVLV IADRDNDPDWIAADMLAQAEHDAGAQAILITDDAAFGDAVEEAVERQLKTLPRADTAAASWRDFGAIILVPDFDKAIPLA NRIAPEHLELATADPDAMVPAIRNAGAIFIGRHTPEVIGDYVGGSNHVLPTARSARFSSGLGVLDYMKRTSILRLDPEQL RILGPAAIALARSEGLEAHARSVAIRLNLGEKG
Specific function: Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine [H]
COG id: COG0141
COG function: function code E; Histidinol dehydrogenase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the histidinol dehydrogenase family [H]
Homologues:
Organism=Escherichia coli, GI1788331, Length=407, Percent_Identity=43.7346437346437, Blast_Score=310, Evalue=1e-85, Organism=Saccharomyces cerevisiae, GI6319819, Length=413, Percent_Identity=39.4673123486683, Blast_Score=273, Evalue=5e-74,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016161 - InterPro: IPR022695 - InterPro: IPR001692 - InterPro: IPR012131 [H]
Pfam domain/function: PF00815 Histidinol_dh [H]
EC number: =1.1.1.23 [H]
Molecular weight: Translated: 45619; Mature: 45487
Theoretical pI: Translated: 4.81; Mature: 4.81
Prosite motif: PS00611 HISOL_DEHYDROGENASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIRLNYLDTGFERDFAAFLTTKREVSEDVNAVVRDIIDDVRARGDAALADYSARFDGID CEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCE FNVTGMAVTAAEIDAAIHAVAPEVLGALKVAATRIEAHHRRQLPKDDIYEDQMGVGLGSR EEECEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCC WTPIDAVGLYVPGGTASYPSSVLMNALPAKVAGVPRIVMVVPAMGGAVNPAVLAAARLAG CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHH VEEIYRIGGAQAVAALAYGTGTIAPVAKIMGPGNAYVAAAKRQVFGTVGIDMIAGPSEVL HHHHHHHCCHHHHHHHHCCCCCHHHHHHHCCCCCCEEEHHHHHHHHHCCEEEECCCCEEE VIADRDNDPDWIAADMLAQAEHDAGAQAILITDDAAFGDAVEEAVERQLKTLPRADTAAA EEEECCCCCCHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCHHHH SWRDFGAIILVPDFDKAIPLANRIAPEHLELATADPDAMVPAIRNAGAIFIGRHTPEVIG HHHHCCEEEEEECCCCCCCHHHHCCCCCEEEECCCCCHHHHHHHCCCEEEEECCCHHHHH DYVGGSNHVLPTARSARFSSGLGVLDYMKRTSILRLDPEQLRILGPAAIALARSEGLEAH HHCCCCCCCCCCCCCCHHCCCCCHHHHHHHCCEEEECHHHHEEECHHHHHHHHHCCCCCC ARSVAIRLNLGEKG CEEEEEEEECCCCC >Mature Secondary Structure AIRLNYLDTGFERDFAAFLTTKREVSEDVNAVVRDIIDDVRARGDAALADYSARFDGID EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCE FNVTGMAVTAAEIDAAIHAVAPEVLGALKVAATRIEAHHRRQLPKDDIYEDQMGVGLGSR EEECEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCC WTPIDAVGLYVPGGTASYPSSVLMNALPAKVAGVPRIVMVVPAMGGAVNPAVLAAARLAG CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHH VEEIYRIGGAQAVAALAYGTGTIAPVAKIMGPGNAYVAAAKRQVFGTVGIDMIAGPSEVL HHHHHHHCCHHHHHHHHCCCCCHHHHHHHCCCCCCEEEHHHHHHHHHCCEEEECCCCEEE VIADRDNDPDWIAADMLAQAEHDAGAQAILITDDAAFGDAVEEAVERQLKTLPRADTAAA EEEECCCCCCHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCHHHH SWRDFGAIILVPDFDKAIPLANRIAPEHLELATADPDAMVPAIRNAGAIFIGRHTPEVIG HHHHCCEEEEEECCCCCCCHHHHCCCCCEEEECCCCCHHHHHHHCCCEEEEECCCHHHHH DYVGGSNHVLPTARSARFSSGLGVLDYMKRTSILRLDPEQLRILGPAAIALARSEGLEAH HHCCCCCCCCCCCCCCHHCCCCCHHHHHHHCCEEEECHHHHEEECHHHHHHHHHCCCCCC ARSVAIRLNLGEKG CEEEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11481430 [H]